Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 0.0e+00 1123.6 554 100.0
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.1e-296 1021.1 527 96.4
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 4.2e-261 904.4 503 90.9
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.6e-260 902.5 489 92.2
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 3.4e-226 788.5 489 78.9
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 4.5e-223 778.1 491 78.8
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 4.5e-223 778.1 491 78.8
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 5.9e-223 777.7 490 78.2
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.8e-222 775.0 490 78.2
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.1e-221 773.5 490 78.2
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.5e-221 773.1 489 77.9
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 3.6e-220 768.5 490 77.3
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 2.4e-208 729.2 490 75.9
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.3e-206 723.4 462 77.1
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.3e-201 706.8 489 72.6
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.5e-197 693.3 461 75.1
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 7.8e-183 644.4 489 66.1
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.3e-182 643.7 501 64.9
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 4.3e-181 638.6 489 64.6
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 5.3e-179 631.7 500 63.6
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 2.0e-178 629.8 489 63.8
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.3e-177 627.1 490 64.7
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.2e-177 626.3 487 63.4
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.9e-176 623.2 489 65.0
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 7.8e-175 617.8 496 64.1
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.9e-174 615.5 491 63.1
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 5.1e-174 615.1 490 63.3
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 6.6e-174 614.8 493 63.7
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 8.7e-174 614.4 450 66.2
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.1e-173 614.0 490 63.3
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.5e-173 613.6 489 63.6
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.5e-173 612.8 489 63.2
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 3.3e-173 612.5 493 63.7
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.6e-173 611.7 493 63.7
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 9.6e-173 610.9 483 64.4
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 3.6e-172 609.0 479 63.5
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.1e-171 607.4 495 62.0
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.4e-171 607.1 477 63.7
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 2.9e-169 599.4 477 63.3
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.8e-169 599.0 500 61.6
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 4.9e-169 598.6 489 61.8
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.1e-168 597.4 500 61.4
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.6e-167 593.6 498 61.0
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.1e-165 587.4 493 60.4
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 4.3e-165 585.5 489 60.9
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.3e-164 583.9 446 64.3
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 5.8e-162 575.1 400 71.2
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 7.6e-162 574.7 499 60.3
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 9.9e-162 574.3 471 62.4
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 4.9e-161 572.0 441 64.4
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 6.4e-161 571.6 489 60.7
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.4e-160 570.5 527 58.1
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.5e-160 569.7 488 58.0
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.6e-159 567.0 474 60.8
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.6e-159 567.0 489 58.9
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 3.5e-159 565.8 489 59.1
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.3e-158 563.9 488 57.6
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.9e-157 560.1 399 69.2
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 4.3e-157 558.9 483 60.7
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 9.6e-157 557.8 490 56.9
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 4.8e-156 555.4 404 67.8
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.8e-155 553.5 461 59.9
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 4.0e-155 552.4 459 60.1
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 5.3e-155 552.0 459 61.7
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 4.5e-154 548.9 744 43.7
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.9e-152 543.5 493 56.4
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 3.2e-152 542.7 492 57.1
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 5.5e-152 542.0 492 55.3
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 2.7e-151 539.7 446 61.4
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 3.0e-150 536.2 438 60.7
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 3.9e-150 535.8 459 60.3
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 9.7e-149 531.2 398 65.8
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 2.8e-148 529.6 416 63.2
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.7e-148 529.3 496 55.8
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 4.8e-148 528.9 434 60.1
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 8.2e-148 528.1 430 62.1
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.4e-147 527.3 402 65.4
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.8e-147 526.9 467 59.3
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.4e-147 526.6 553 51.7
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.3e-147 525.4 428 61.9
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 6.9e-147 525.0 446 58.1
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 6.9e-147 525.0 474 58.2
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.2e-146 524.2 436 59.4
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.2e-146 524.2 436 59.4
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-146 523.9 436 59.2
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.5e-146 523.9 428 61.9
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 2.0e-146 523.5 488 55.5
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.6e-146 523.1 414 62.8
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 3.4e-146 522.7 400 62.8
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 3.4e-146 522.7 489 55.4
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 5.9e-146 521.9 479 56.2
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.7e-145 520.4 496 56.2
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 2.2e-145 520.0 414 63.5
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.2e-145 520.0 430 61.2
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 3.8e-145 519.2 436 59.6
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 3.8e-145 519.2 485 56.5
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 5.0e-145 518.8 441 60.1
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 5.0e-145 518.8 492 55.3
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 6.5e-145 518.5 486 56.4
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.1e-144 517.7 400 62.5
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.5e-144 516.5 406 63.5
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 5.5e-144 515.4 483 56.3
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 7.2e-144 515.0 400 64.8
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 7.2e-144 515.0 400 63.2
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.2e-143 514.2 483 56.1
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.6e-143 513.8 499 55.9
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.6e-143 513.8 409 62.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.7e-143 513.1 400 61.8
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 6.1e-143 511.9 406 63.5
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 1.0e-142 511.1 493 53.5
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-142 510.8 437 58.8
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.4e-142 510.8 406 62.8
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.8e-142 510.4 475 57.9
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 3.0e-142 509.6 513 52.8
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 8.8e-142 508.1 480 55.0
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.1e-141 507.7 496 54.0
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.0e-141 506.9 553 52.1
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 5.7e-141 505.4 426 61.0
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 6.3e-140 501.9 477 56.4
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.4e-139 500.7 455 59.3
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 6.9e-139 498.4 465 55.9
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 6.9e-139 498.4 465 55.9
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 6.9e-139 498.4 465 55.9
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.2e-138 497.7 400 61.0
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.6e-138 496.5 366 65.8
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-136 491.1 467 56.1
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.4e-136 490.7 467 56.1
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.9e-136 490.3 402 59.2
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 3.2e-136 489.6 401 63.3
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 7.2e-136 488.4 364 65.7
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.4e-134 484.2 411 58.4
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 5.1e-134 482.3 483 53.6
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 8.8e-134 481.5 467 54.8
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 1.1e-133 481.1 458 54.6
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 2.8e-132 476.5 502 53.0
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.4e-131 473.4 396 60.6
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.2e-130 471.1 371 62.8
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 1.0e-129 468.0 583 46.0
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 7.4e-125 451.8 317 70.0
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.4e-123 446.8 311 68.8
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 4.1e-123 446.0 402 55.5
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.7e-119 433.3 400 54.2
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 6.1e-119 432.2 405 55.1
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 4.4e-117 426.0 377 58.1
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.4e-115 421.0 401 52.4
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 4.8e-108 396.0 375 53.9
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 2.1e-87 327.4 257 63.8
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 5.6e-80 302.8 244 63.1
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 3.1e-78 297.0 279 55.2
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.0e-78 296.6 223 67.3
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 9.9e-77 292.0 218 64.2
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 7.8e-74 282.3 254 57.1
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 1.9e-72 277.7 218 61.0
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 3.0e-65 253.8 234 56.4
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 3.6e-63 246.9 310 45.2
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 6.2e-55 219.5 121 91.7
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 8.4e-52 209.1 275 44.4
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.9e-49 200.3 413 36.1
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 3.9e-49 200.3 492 30.5
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.6e-42 178.3 97 88.7
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.6e-34 151.8 123 61.0
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.7e-34 151.0 267 39.3
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.4e-30 137.9 201 41.8
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.7e-28 131.7 286 31.1
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 4.6e-26 123.6 655 23.1
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.1e-24 119.0 77 74.0
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 1.7e-23 115.2 117 50.4
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.8e-23 114.4 116 53.4
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 9.1e-22 109.4 144 43.8
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.0e-12 77.0 47 70.2
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 5.5e-11 73.6 236 28.4
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 6.1e-10 70.1 387 24.8
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 8.0e-10 69.7 47 66.0
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 8.2e-07 59.7 44 61.4


User provided reference genes

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