Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 2358.6 1113 100.0
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 2335.8 1113 99.1
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1991.5 1108 83.1
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1989.5 1120 82.1
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1976.4 1120 81.2
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1964.5 1112 81.0
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1956.8 1123 80.9
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1956.4 1106 80.7
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1951.0 1121 79.9
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1949.5 1119 79.8
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1937.2 1114 79.4
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1898.2 1087 80.3
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1776.9 1109 72.3
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1756.1 1117 71.1
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1756.1 1117 71.4
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1753.8 1109 72.0
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1751.1 1111 70.7
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1749.6 1109 71.9
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1748.0 1118 71.3
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1745.3 1111 71.1
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1741.1 1109 71.2
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1739.5 1109 71.2
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1736.9 1109 71.2
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1733.8 1109 71.1
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1731.8 1114 71.6
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1720.3 1120 70.0
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1710.3 1113 69.9
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1709.1 1109 70.3
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1705.3 1106 70.6
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1703.3 1109 69.4
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1702.2 1110 69.5
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1701.8 1114 68.9
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1696.0 1125 69.2
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1692.6 1110 69.5
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1687.9 1116 68.6
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1687.9 1110 68.5
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1685.2 1108 69.5
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1685.2 1111 69.8
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1683.3 1105 69.6
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1674.8 1099 69.4
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1669.4 1109 67.6
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1666.7 1117 68.2
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1660.6 1118 68.9
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1659.8 1101 68.2
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1657.9 1109 67.5
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1651.0 1101 67.9
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1648.6 1103 67.6
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1644.8 1220 63.9
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1643.6 1095 67.8
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1643.6 1066 69.6
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1643.2 1106 67.5
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1643.2 1094 67.9
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1643.2 1098 67.5
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1642.5 1109 67.7
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1640.9 1103 67.1
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1640.9 1096 67.9
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1640.6 1116 68.0
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1638.6 1115 67.3
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1638.6 1103 67.1
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1638.6 1087 67.8
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1638.2 1103 67.1
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1632.5 1093 67.8
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1632.1 1121 66.6
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1628.6 1104 67.1
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1624.0 1108 66.5
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1623.2 1109 68.0
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1619.0 1108 66.6
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1615.9 1110 66.8
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1611.3 1108 66.7
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1594.3 1117 64.9
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1592.4 1107 66.0
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1582.4 1108 65.7
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1578.9 1094 65.5
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1577.8 989 72.8
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1577.0 1093 66.5
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1573.5 1124 63.7
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1571.6 1057 67.4
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1562.7 1118 64.8
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1561.6 1111 64.4
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1547.3 1102 63.0
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1540.0 1125 62.8
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1528.5 1122 62.8
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1525.0 1087 64.3
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1493.8 1070 62.6
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1455.3 1153 59.8
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1447.6 990 67.2
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1381.7 896 71.3
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1360.5 915 67.7
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1277.3 1154 52.7
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1253.4 1107 53.9
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1245.3 1118 53.4
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1232.2 1034 56.6
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1228.0 832 67.1
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1209.9 832 66.8
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1166.0 1118 51.2
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1146.7 749 68.8
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1113.2 739 67.7
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1106.7 753 66.5
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 2.0e-310 1069.3 664 72.9
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 4.3e-297 1025.0 1137 46.8
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 4.2e-284 981.9 690 65.7
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.0e-245 854.4 675 60.3
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 2.0e-230 803.5 498 73.7
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 6.3e-216 755.4 516 66.1
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.6e-214 750.7 516 66.1
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.0e-198 697.2 568 56.5
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 1.1e-167 595.1 1496 30.0
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 6.7e-149 532.7 599 45.9
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 4.3e-148 530.0 382 65.2
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 3.7e-131 473.8 281 75.8
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 1.0e-112 412.5 1102 28.5
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 3.8e-112 410.6 239 76.2
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.1e-110 404.8 272 70.2
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 1.8e-109 401.7 841 33.9
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 3.4e-84 317.8 193 71.0
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 8.3e-83 313.2 200 70.5
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 1.4e-77 295.8 259 53.7
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 6.8e-77 293.5 174 77.0
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 2.6e-68 265.0 208 59.1
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 3.0e-64 251.5 155 69.7
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 5.2e-61 240.7 167 67.7
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 5.6e-55 220.7 164 61.0
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.7e-51 209.1 209 49.8
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 1.7e-43 182.6 121 66.1
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 5.1e-40 171.0 122 66.4
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 6.0e-33 147.5 105 60.0
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 2.3e-32 145.6 137 48.9
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 7.4e-31 140.6 189 40.7
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.4e-29 136.3 127 51.2
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 6.9e-29 134.0 171 42.7
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 3.4e-28 131.7 81 70.4
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 5.8e-28 131.0 75 72.0
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 3.8e-27 128.3 138 45.7
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 8.4e-27 127.1 133 46.6
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 1.9e-26 125.9 96 60.4
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.5e-26 125.6 134 46.3
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 2.7e-25 122.1 146 46.6
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 7.9e-25 120.6 141 48.9
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 2.0e-20 105.9 53 88.7
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 3.4e-20 105.1 117 49.6
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 3.6e-17 95.1 100 48.0
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 5.1e-16 91.3 66 57.6
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 2.2e-14 85.9 121 43.0
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 2.0e-12 79.3 50 70.0
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 2.5e-10 72.4 84 41.7
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 4.2e-10 71.6 60 55.0
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 7.2e-10 70.9 43 65.1
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 2.7e-09 68.9 43 62.8
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 1.0e-08 67.0 43 60.5
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 1.4e-08 66.6 43 62.8
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 3.9e-08 65.1 47 55.3
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 6.7e-08 64.3 57 50.9
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 2.6e-07 62.4 94 37.2


User provided reference genes

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