Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LI75FD Arachis hypogaea HOM05D006204 ORTHO05D007851 4.3e-297 1023.8 501 100.0
Lj1g0017122 Lotus japonicus HOM05D006204 ORTHO05D007851 2.1e-187 659.4 523 66.3
Lalb_Chr19g0126211 Lupinus albus HOM05D006204 ORTHO05D007851 4.0e-186 655.2 492 68.3
Medtr7g051240 Medicago truncatula HOM05D006204 ORTHO05D007851 1.1e-175 620.5 503 64.0
Phvul.008G135100 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.6e-174 616.7 509 62.9
Ca_07443_v3 Cicer arietinum L. HOM05D006204 ORTHO05D007851 1.1e-172 610.5 461 68.1
Glyma.08G343200 Glycine max HOM05D006204 ORTHO05D007851 3.3e-172 609.0 518 61.4
TPR.G26855 Trifolium pratense HOM05D006204 ORTHO05D007851 9.9e-169 597.4 474 65.6
Phvul.008G135200 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 3.9e-165 585.5 453 64.9
Psat3g151720 Pisum sativum HOM05D006204 ORTHO05D007851 2.8e-163 579.3 433 67.9
Cfa010629 Carpinus fangiana HOM05D006204 ORTHO05D007851 8.4e-152 541.2 516 55.2
CiPaw.13G058500 Carya illinoinensis HOM05D006204 ORTHO05D007851 4.2e-151 538.9 517 55.7
VMungo1383G3498 Vigna mungo HOM05D006204 ORTHO05D007851 9.3e-151 537.7 409 66.5
Ciclev10015007m.g Citrus clementina HOM05D006204 ORTHO05D007851 8.2e-147 524.6 505 55.8
Prupe.8G189100 Prunus persica HOM05D006204 ORTHO05D007851 1.2e-145 520.8 501 55.5
Cfa010628 Carpinus fangiana HOM05D006204 ORTHO05D007851 2.6e-145 519.6 464 57.8
MD05G1157000 Malus domestica HOM05D006204 ORTHO05D007851 4.5e-145 518.8 514 53.9
QL09p047023 Quercus lobata HOM05D006204 ORTHO05D007851 5.9e-145 518.5 463 59.0
Manes.12G059400 Manihot esculenta HOM05D006204 ORTHO05D007851 3.8e-144 515.8 521 53.2
TWI36G0048 Tripterygium wilfordii HOM05D006204 ORTHO05D007851 1.6e-142 510.4 509 53.8
Duzib211G0163 Durio zibethinus HOM05D006204 ORTHO05D007851 2.7e-142 509.6 496 54.2
Cpa.g.sc8.59 Carica papaya HOM05D006204 ORTHO05D007851 3.6e-142 509.2 490 55.3
VMungo1383G1750 Vigna mungo HOM05D006204 ORTHO05D007851 5.1e-141 505.4 405 63.0
BolC7t44436H Brassica oleracea HOM05D006204 ORTHO05D007851 2.5e-140 503.1 453 57.6
Gorai.007G160200 Gossypium raimondii HOM05D006204 ORTHO05D007851 4.3e-140 502.3 504 53.0
RcHm_v2.0_Chr6g0282641 Rosa chinensis HOM05D006204 ORTHO05D007851 4.3e-140 502.3 525 51.6
Thecc.01G209900 Theobroma cacao HOM05D006204 ORTHO05D007851 4.3e-140 502.3 457 56.9
Gohir.D11G149400 Gossypium hirsutum HOM05D006204 ORTHO05D007851 5.7e-140 501.9 504 53.2
Prupe.8G189200 Prunus persica HOM05D006204 ORTHO05D007851 5.7e-140 501.9 469 55.7
Rhsim13G0053400 Rhododendron simsii HOM05D006204 ORTHO05D007851 1.7e-139 500.4 466 56.9
Haze_03572 Corylus avellana HOM05D006204 ORTHO05D007851 3.7e-139 499.2 587 48.4
Sabra14G0135500 Salix brachista HOM05D006204 ORTHO05D007851 8.2e-139 498.0 501 53.1
Lj2C1115T10 Lonicera japonica HOM05D006204 ORTHO05D007851 1.1e-138 497.7 511 52.3
BraA06t26832Z Brassica rapa HOM05D006204 ORTHO05D007851 6.9e-138 495.0 453 56.1
C07p39160 Brassica napus HOM05D006204 ORTHO05D007851 1.2e-137 494.2 453 56.3
COL.COLO4_06929 Corchorus olitorius HOM05D006204 ORTHO05D007851 3.4e-137 492.7 525 52.2
Thhalv10004189m.g Eutrema salsugineum HOM05D006204 ORTHO05D007851 3.4e-137 492.7 461 55.3
Potri.014G018300 Populus trichocarpa HOM05D006204 ORTHO05D007851 3.4e-137 492.7 503 52.1
A06p39170 Brassica napus HOM05D006204 ORTHO05D007851 1.0e-136 491.1 453 56.1
BcaC06g30795 Brassica carinata HOM05D006204 ORTHO05D007851 1.3e-136 490.7 453 55.8
CsaV3_7G027170 Cucumis sativus L. HOM05D006204 ORTHO05D007851 1.3e-136 490.7 453 55.4
ClCG09G007900 Citrullus lanatus HOM05D006204 ORTHO05D007851 1.7e-136 490.3 462 54.5
CSS0007769 Camellia sinensis var. sinensis HOM05D006204 ORTHO05D007851 2.2e-136 490.0 497 52.5
Dinv10448 Davidia involucrata HOM05D006204 ORTHO05D007851 3.8e-136 489.2 506 52.6
Eucgr.H00714 Eucalyptus grandis HOM05D006204 ORTHO05D007851 1.1e-135 487.6 502 52.0
Sp2g18790 Schrenkiella parvula HOM05D006204 ORTHO05D007851 1.9e-135 486.9 457 54.9
Carub.0008s0801 Capsella rubella HOM05D006204 ORTHO05D007851 2.5e-135 486.5 457 55.1
AL8G21270 Arabidopsis lyrata HOM05D006204 ORTHO05D007851 3.2e-135 486.1 475 53.5
AT5G48440 Arabidopsis thaliana HOM05D006204 ORTHO05D007851 4.2e-135 485.7 487 53.2
Gohir.A11G143100 Gossypium hirsutum HOM05D006204 ORTHO05D007851 1.6e-134 483.8 504 51.8
Potri.014G177300 Populus trichocarpa HOM05D006204 ORTHO05D007851 3.6e-134 482.6 504 51.6
Peaxi162Scf00672g00017 Petunia axillaris HOM05D006204 ORTHO05D007851 1.8e-133 480.3 513 49.5
Aa31sc661G10 Aethionema arabicum HOM05D006204 ORTHO05D007851 3.0e-133 479.6 506 51.2
Cc01_g16040 Coffea canephora HOM05D006204 ORTHO05D007851 6.7e-133 478.4 461 53.1
FvH4_2g17671 Fragaria vesca HOM05D006204 ORTHO05D007851 6.7e-133 478.4 503 51.3
PGR083G1941 Punica granatum HOM05D006204 ORTHO05D007851 1.1e-132 477.6 457 53.0
Sed0024966 Sechium edule HOM05D006204 ORTHO05D007851 1.1e-132 477.6 452 54.2
FAN27G0099 Fragaria x ananassa HOM05D006204 ORTHO05D007851 2.6e-132 476.5 503 51.1
ECA236G0779 Erigeron canadensis HOM05D006204 ORTHO05D007851 4.8e-131 472.2 496 50.4
Solyc09g055910.3 Solanum lycopersicum HOM05D006204 ORTHO05D007851 4.8e-131 472.2 459 52.7
AUR62008077 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.8e-130 470.3 493 49.5
Lsat_1_v5_gn_8_97700 Lactuca sativa HOM05D006204 ORTHO05D007851 1.8e-130 470.3 502 49.4
Nitab4.5_0002518g0020 Nicotiana tabacum HOM05D006204 ORTHO05D007851 3.1e-130 469.5 459 51.9
Sopen09g021740 Solanum pennellii HOM05D006204 ORTHO05D007851 4.1e-130 469.2 515 48.5
PSO210G2735 Papaver somniferum HOM05D006204 ORTHO05D007851 5.3e-130 468.8 455 53.4
CAN.G120.6 Capsicum annuum HOM05D006204 ORTHO05D007851 2.0e-129 466.8 510 48.6
PSO832G1370 Papaver somniferum HOM05D006204 ORTHO05D007851 2.6e-129 466.5 455 53.6
Hma1.2p1_0161F.1_g071490 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 3.5e-129 466.1 469 52.2
MSTRG.18500 Avicennia marina HOM05D006204 ORTHO05D007851 7.7e-129 464.9 455 51.4
Hund09476 Selenicereus undatus HOM05D006204 ORTHO05D007851 1.3e-128 464.2 500 49.0
Ah.02g111080 Amaranthus hybridus HOM05D006204 ORTHO05D007851 2.2e-128 463.4 503 47.9
Oeu051516.1 Olea europaea HOM05D006204 ORTHO05D007851 2.5e-127 459.9 459 51.6
CARHR183670 Cardamine hirsuta HOM05D006204 ORTHO05D007851 9.4e-127 458.0 494 51.0
SalBow6G6469 Salvia bowleyana HOM05D006204 ORTHO05D007851 2.1e-126 456.8 516 48.6
FAN15G1742 Fragaria x ananassa HOM05D006204 ORTHO05D007851 2.3e-125 453.4 523 48.4
THA.LOC104802642 Tarenaya hassleriana HOM05D006204 ORTHO05D007851 6.7e-125 451.8 479 50.3
SGA_v2.0_scaffold566G52950 Striga asiatica HOM05D006204 ORTHO05D007851 7.4e-124 448.4 455 50.3
Aqoxy2G00207 Aquilegia oxysepala HOM05D006204 ORTHO05D007851 2.8e-123 446.4 515 46.8
HanXRQChr09g0257591 Helianthus annuus HOM05D006204 ORTHO05D007851 1.1e-122 444.5 467 49.9
EL10Ac5g10598 Beta vulgaris HOM05D006204 ORTHO05D007851 1.8e-122 443.7 488 48.2
GSVIVG01003799001 Vitis vinifera HOM05D006204 ORTHO05D007851 5.3e-122 442.2 408 53.9
Nitab4.5_0000038g0330 Nicotiana tabacum HOM05D006204 ORTHO05D007851 7.0e-122 441.8 443 50.6
Migut.D00744 Erythranthe guttata HOM05D006204 ORTHO05D007851 2.0e-121 440.3 478 47.9
HanXRQChr09g0257621 Helianthus annuus HOM05D006204 ORTHO05D007851 5.9e-121 438.7 474 47.3
ATR0743G111 Amborella trichopoda HOM05D006204 ORTHO05D007851 7.0e-114 415.2 455 48.6
vmacro02824 Vaccinium macrocarpon HOM05D006204 ORTHO05D007851 1.7e-112 410.6 519 46.6
Zm00001eb318320 Zea mays HOM05D006204 ORTHO05D007851 1.7e-112 410.6 458 48.9
MBI11_g40788_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 5.5e-111 405.6 411 50.1
Nn1g09591 Nelumbo nucifera HOM05D006204 ORTHO05D007851 5.5e-111 405.6 406 51.5
Hund09342 Selenicereus undatus HOM05D006204 ORTHO05D007851 1.4e-109 401.0 451 48.1
TAR362G0101 Trochodendron aralioides HOM05D006204 ORTHO05D007851 2.2e-107 393.7 357 56.3
Sc17g0001620 Simmondsia chinensis HOM05D006204 ORTHO05D007851 2.8e-107 393.3 402 50.0
DCAR_000507 Daucus carota HOM05D006204 ORTHO05D007851 1.4e-106 391.0 456 45.8
unitig_736.g22899 Utricularia gibba HOM05D006204 ORTHO05D007851 6.6e-104 382.1 475 44.2
AUR62028656 Chenopodium quinoa HOM05D006204 ORTHO05D007851 7.2e-103 378.6 491 43.8
AUR62027071 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.8e-85 320.9 452 41.8
AUR62030912 Chenopodium quinoa HOM05D006204 ORTHO05D007851 2.6e-84 317.0 452 42.5
AagrBONN_evm.TU.Sc2ySwM_344.1300 Anthoceros agrestis HOM05D006204 ORTHO05D007851 7.5e-84 315.5 453 38.9
Pp3c13_24490 Physcomitrium patens HOM05D006204 ORTHO05D007851 8.3e-83 312.0 465 37.2
Mapoly0020s0122 Marchantia polymorpha HOM05D006204 ORTHO05D007851 1.9e-79 300.8 488 36.3
Actinidia30007 Actinidia chinensis HOM05D006204 ORTHO05D007851 4.7e-78 296.2 304 51.3
Hma1.2p1_0161F.1_g071500 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 3.7e-75 286.6 221 60.6
Ah.01g024240 Amaranthus hybridus HOM05D006204 ORTHO05D007851 1.1e-74 285.0 396 42.9
SMO364G0271 Selaginella moellendorffii HOM05D006204 ORTHO05D007851 4.1e-74 283.1 436 37.8
MELO3C015716.2 Cucumis melo HOM05D006204 ORTHO05D007851 2.8e-70 270.4 190 68.9
Haze_03570 Corylus avellana HOM05D006204 ORTHO05D007851 7.6e-68 262.3 299 47.8
Atru.chr6.3536 Acer truncatum HOM05D006204 ORTHO05D007851 1.2e-65 255.0 297 48.1
AUR62043643 Chenopodium quinoa HOM05D006204 ORTHO05D007851 2.1e-65 254.2 332 42.5
SEGI_17774 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 1.1e-47 195.3 220 45.9
Psat0s4407g0040 Pisum sativum HOM05D006204 ORTHO05D007851 8.4e-43 179.1 114 71.9
Actinidia27653 Actinidia chinensis HOM05D006204 ORTHO05D007851 4.8e-38 163.3 145 59.3
Cre07.g346800 Chlamydomonas reinhardtii HOM05D006204 ORTHO05D007851 6.2e-38 162.9 469 29.6
Cc10_g08090 Coffea canephora HOM05D006204 ORTHO05D007851 7.9e-33 146.0 98 71.4
QL09p047008 Quercus lobata HOM05D006204 ORTHO05D007851 1.8e-29 134.8 284 32.7
Atru.chr6.3537 Acer truncatum HOM05D006204 ORTHO05D007851 2.6e-28 131.0 100 67.0
SEGI_39676 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 7.7e-28 129.4 94 63.8
MELO3C029187.2 Cucumis melo HOM05D006204 ORTHO05D007851 3.0e-24 117.5 105 56.2
Psat7g213000 Pisum sativum HOM05D006204 ORTHO05D007851 1.5e-23 115.2 82 69.5
Phvul.L001686 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 7.7e-20 102.8 83 63.9
HPP92_002747 Vanilla planifolia HOM05D006204 ORTHO05D007851 2.5e-18 97.8 104 49.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 4.7e-17 93.6 419 24.8
MBI11_g40786_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 4.5e-12 77.0 50 78.0
HPP92_002746 Vanilla planifolia HOM05D006204 ORTHO05D007851 2.9e-11 74.3 69 52.2
SEGI_16048 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 1.9e-10 71.6 65 49.2
Os09g0514100 Oryza sativa ssp. japonica HOM05D006204 ORTHO05D007851 4.2e-10 70.5 105 42.9


User provided reference genes

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