Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 0.0e+00 1615.1 1358 100.0
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 0.0e+00 1490.7 1358 94.8
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 1.6e-301 1040.0 1363 70.2
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 8.6e-284 981.1 1365 70.8
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.5e-272 943.7 1365 64.3
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 5.6e-259 898.7 1363 68.5
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.2e-256 891.0 1365 66.4
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 4.6e-245 852.4 1368 67.8
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 3.1e-217 760.0 1365 57.8
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 2.9e-207 726.9 1367 58.3
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 3.0e-204 716.8 1364 60.8
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 4.9e-202 709.5 1363 57.8
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 9.5e-190 668.7 1386 53.0
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 3.4e-187 660.2 1388 47.0
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 7.3e-182 642.5 1368 49.8
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 6.2e-181 639.4 1389 57.3
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 1.2e-176 625.2 1385 52.1
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 4.6e-176 623.2 1380 50.7
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 2.9e-170 604.0 1388 50.0
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 9.2e-169 599.0 1536 41.1
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 4.6e-160 570.1 1464 48.2
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 1.1e-158 565.5 1135 55.8
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 1.1e-158 565.5 1386 47.7
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 1.9e-158 564.7 1386 47.6
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 4.0e-156 557.0 1417 54.9
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 9.9e-155 552.4 1383 46.6
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 2.2e-154 551.2 1385 49.9
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.2e-154 551.2 1440 46.7
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 2.9e-154 550.8 1378 48.7
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 2.4e-153 547.7 1109 45.1
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.6e-152 545.0 1383 54.7
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 2.1e-152 544.7 1386 52.3
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 1.3e-149 535.4 1579 43.1
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 3.7e-149 533.9 1387 48.9
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 1.5e-147 528.5 1577 42.1
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.7e-146 525.0 1569 44.2
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 3.8e-146 523.9 1377 46.5
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.2e-144 518.8 1369 44.7
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 1.1e-142 512.3 1386 46.2
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 3.7e-141 507.3 1384 50.6
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 3.1e-140 504.2 1375 46.5
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 5.3e-140 503.4 1567 39.1
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 2.6e-139 501.1 1384 47.2
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.5e-139 500.4 1376 47.2
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 3.8e-138 497.3 1378 46.3
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 4.9e-138 496.9 1383 45.2
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.4e-137 495.4 1377 43.0
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.6e-136 491.9 1294 45.4
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.5e-136 490.7 1376 47.5
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 3.3e-134 484.2 1377 50.1
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 9.7e-134 482.6 1383 50.5
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.4e-132 478.8 1383 49.6
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 8.5e-130 469.5 1578 41.9
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 6.1e-128 463.4 1378 44.0
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 3.9e-127 460.7 1384 45.0
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.7e-125 454.1 1386 50.3
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 1.1e-124 452.6 1336 48.9
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 5.9e-123 446.8 1376 46.5
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.8e-119 433.0 1389 45.5
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 1.3e-117 429.1 1556 42.2
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 1.5e-115 422.2 1380 44.1
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 2.0e-115 421.8 1637 33.9
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.1e-113 416.0 1577 41.2
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.1e-110 406.0 1386 46.6
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 8.0e-104 383.3 1389 41.0
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 2.3e-103 381.7 1099 34.1
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 2.0e-102 378.6 1644 37.7
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 3.3e-102 377.9 1348 41.5
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 7.5e-102 376.7 1387 47.7
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 9.7e-102 376.3 1331 39.8
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.8e-101 374.8 1386 39.3
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.4e-100 372.5 1389 44.0
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.4e-100 372.5 1389 44.0
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 5.9e-99 367.1 944 55.5
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 2.9e-98 364.8 1388 39.3
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 6.1e-96 357.1 1457 43.4
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.5e-94 352.4 1385 44.5
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.0e-94 352.1 1385 44.0
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 5.0e-90 337.4 1567 37.6
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 8.6e-90 336.7 1390 37.5
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.1e-88 332.0 1441 34.1
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 2.7e-83 315.1 617 40.0
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.8e-80 305.1 1385 40.4
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 4.4e-78 297.7 1369 39.2
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 1.4e-76 292.7 615 37.6
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.0e-74 286.6 1398 43.6
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 8.6e-74 283.5 518 42.9
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 1.9e-73 282.3 1383 34.9
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.4e-63 249.6 363 48.5
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 5.6e-57 227.6 419 43.7
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 5.8e-54 217.6 1368 38.0
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 3.8e-53 214.9 375 42.4
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 1.4e-52 213.0 1384 37.9
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 3.5e-51 208.4 414 40.8
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 7.8e-51 207.2 284 47.2
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 8.7e-50 203.8 1003 33.9
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 9.0e-47 193.7 377 41.6
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 4.4e-46 191.4 1372 35.6
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.9e-46 190.3 424 39.2
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 6.0e-43 181.0 1387 45.9
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 5.1e-42 177.9 367 40.6
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 5.1e-42 177.9 228 52.2
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 6.6e-42 177.6 612 34.3
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.6e-40 172.9 418 36.6
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 1.2e-38 166.8 541 37.5
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 2.6e-38 165.6 427 38.4
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.4e-37 161.0 214 51.9
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 1.4e-36 159.8 271 45.0
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 4.2e-36 158.3 1361 29.2
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 9.3e-36 157.1 1416 36.8
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.2e-35 156.8 991 47.5
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.3e-34 153.3 340 39.4
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 9.6e-33 147.1 613 29.9
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.2e-32 144.4 334 34.7
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 2.0e-30 139.4 1373 28.0
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 2.2e-29 136.0 374 38.0
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 6.5e-29 134.4 241 45.2
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.1e-28 133.7 376 35.4
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 4.2e-28 131.7 441 32.2
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 7.1e-28 131.0 322 37.3
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 2.1e-27 129.4 241 44.8
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 3.5e-27 128.6 603 27.0
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 4.6e-27 128.3 368 34.8
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 4.6e-27 128.3 301 38.9
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 6.7e-26 124.4 407 33.4
arahy.Tifrunner.gnm1.ann1.7R6RP5 Arachis hypogaea HOM05D003806 ORTHO05D004346 1.1e-25 123.6 87 87.4
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 1.5e-25 123.2 437 30.7
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 3.3e-25 122.1 162 48.8
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 4.8e-24 118.2 1156 30.6
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.2e-24 117.5 473 32.1
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.0e-23 115.2 154 48.7
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.0e-23 115.2 154 48.7
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 4.2e-20 105.1 170 39.4
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 5.5e-20 104.8 317 34.1
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 5.5e-20 104.8 317 34.1
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 5.5e-20 104.8 452 27.7
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.6e-19 103.2 230 37.8
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.1e-19 102.8 438 31.7
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.1e-19 102.8 438 31.7
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 2.7e-19 102.4 322 33.2
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 4.6e-19 101.7 432 25.9
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 6.1e-19 101.3 532 26.9
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 1.0e-18 100.5 118 59.3
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 6.7e-18 97.8 448 27.9
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 1.5e-17 96.7 602 24.4
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 7.4e-17 94.4 341 32.6
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.6e-16 93.2 1214 34.5
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.6e-16 93.2 436 30.3
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.5e-14 86.7 303 33.0
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 7.7e-14 84.3 89 61.8
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.1e-12 80.5 608 28.9
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.2e-12 79.0 251 32.7
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.2e-12 79.0 251 32.7
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 9.4e-12 77.4 283 31.4
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 9.4e-12 77.4 483 25.9
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 1.2e-11 77.0 1385 35.7
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 1.0e-10 73.9 528 24.4
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.3e-09 68.9 167 41.9
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 4.3e-09 68.6 146 38.4
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-08 67.0 141 34.0
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-08 67.0 335 28.7
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 4.8e-08 65.1 340 30.3
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 1.1e-07 63.9 322 30.1
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.8e-07 63.2 185 34.1
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 2.4e-07 62.8 105 44.8
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 3.1e-07 62.4 162 35.8
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 5.3e-07 61.6 319 28.5
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 2.0e-06 59.7 1398 41.2
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 2.6e-06 59.3 89 37.1


User provided reference genes

Program Settings