Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L9V8FT Arachis hypogaea HOM05D002087 ORTHO05D002101 6.1e-49 197.2 103 100.0
arahy.Tifrunner.gnm1.ann1.06AKLM Arachis hypogaea HOM05D002087 ORTHO05D002101 1.5e-47 192.6 103 97.1
arahy.Tifrunner.gnm1.ann1.03QWZ4 Arachis hypogaea HOM05D002087 ORTHO05D002101 8.9e-24 113.6 80 73.8
Glyma.02G017100 Glycine max HOM05D002087 ORTHO05D002101 4.6e-20 101.3 104 62.5
arahy.Tifrunner.gnm1.ann1.GPZ84J Arachis hypogaea HOM05D002087 ORTHO05D002101 6.0e-20 100.9 74 66.2
Lalb_Chr02g0146421 Lupinus albus HOM05D002087 ORTHO05D002101 7.8e-20 100.5 106 55.7
TPR.G39792 Trifolium pratense HOM05D002087 ORTHO05D002101 3.9e-19 98.2 103 58.3
TPR.G9639 Trifolium pratense HOM05D002087 ORTHO05D002101 5.1e-19 97.8 103 57.3
Glyma.10G017600 Glycine max HOM05D002087 ORTHO05D002101 1.1e-18 96.7 105 61.9
Phvul.007G218700 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 1.5e-18 96.3 103 58.3
Glyma.03G215000 Glycine max HOM05D002087 ORTHO05D002101 1.9e-18 95.9 104 59.6
VMungo1383G1626 Vigna mungo HOM05D002087 ORTHO05D002101 9.6e-18 93.6 102 56.9
Medtr7g108735 Medicago truncatula HOM05D002087 ORTHO05D002101 1.3e-17 93.2 103 54.4
Phvul.001G207900 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 2.1e-17 92.4 102 55.9
TPR.G33959 Trifolium pratense HOM05D002087 ORTHO05D002101 4.8e-17 91.3 99 53.5
Phvul.006G107900 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 1.4e-16 89.7 102 56.9
VMungo0720G0684 Vigna mungo HOM05D002087 ORTHO05D002101 1.4e-16 89.7 105 54.3
Medtr7g108745 Medicago truncatula HOM05D002087 ORTHO05D002101 3.1e-16 88.6 103 54.4
Ca_09179_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 5.3e-16 87.8 103 52.4
Ca_30608_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 5.3e-16 87.8 103 52.4
Glyma.19G211600 Glycine max HOM05D002087 ORTHO05D002101 5.3e-16 87.8 104 55.8
Psat6g164600 Pisum sativum HOM05D002087 ORTHO05D002101 6.9e-16 87.4 99 52.5
Psat3g021600 Pisum sativum HOM05D002087 ORTHO05D002101 1.2e-15 86.7 104 51.9
Lj5g0005721 Lotus japonicus HOM05D002087 ORTHO05D002101 7.6e-15 84.0 98 58.2
Glyma.03G253200 Glycine max HOM05D002087 ORTHO05D002101 9.9e-15 83.6 95 53.7
TPR.G22147 Trifolium pratense HOM05D002087 ORTHO05D002101 9.9e-15 83.6 75 57.3
Lj1g0012830 Lotus japonicus HOM05D002087 ORTHO05D002101 2.2e-14 82.4 104 54.8
QL12p028285 Quercus lobata HOM05D002087 ORTHO05D002101 2.2e-14 82.4 100 53.0
Ca_10326_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 2.9e-14 82.0 101 50.5
Haze_04952 Corylus avellana HOM05D002087 ORTHO05D002101 3.8e-14 81.6 93 54.8
Medtr1g088230 Medicago truncatula HOM05D002087 ORTHO05D002101 8.4e-14 80.5 102 50.0
CiPaw.07G110400 Carya illinoinensis HOM05D002087 ORTHO05D002101 1.9e-13 79.3 100 47.0
Cfa005900 Carpinus fangiana HOM05D002087 ORTHO05D002101 7.1e-13 77.4 93 52.7
VMungo1383G1683 Vigna mungo HOM05D002087 ORTHO05D002101 1.6e-12 76.3 108 50.0
Atru.chr5.1130 Acer truncatum HOM05D002087 ORTHO05D002101 7.8e-12 73.9 97 52.6
MELO3C015995.2 Cucumis melo HOM05D002087 ORTHO05D002101 1.0e-11 73.6 107 52.3
CSS0043962 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 1.3e-11 73.2 100 53.0
Sed0008157 Sechium edule HOM05D002087 ORTHO05D002101 1.3e-11 73.2 101 46.5
CsaV3_7G029330 Cucumis sativus L. HOM05D002087 ORTHO05D002101 1.7e-11 72.8 106 48.1
A02p24640 Brassica napus HOM05D002087 ORTHO05D002101 3.0e-11 72.0 94 53.2
Duzib211G0093 Durio zibethinus HOM05D002087 ORTHO05D002101 3.0e-11 72.0 100 52.0
BcaC03g16117 Brassica carinata HOM05D002087 ORTHO05D002101 5.1e-11 71.2 94 53.2
C02p38880 Brassica napus HOM05D002087 ORTHO05D002101 5.1e-11 71.2 94 53.2
Prupe.8G263100 Prunus persica HOM05D002087 ORTHO05D002101 5.1e-11 71.2 103 51.5
Gohir.D08G086300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 6.6e-11 70.9 102 52.0
Thecc.01G302000 Theobroma cacao HOM05D002087 ORTHO05D002101 6.6e-11 70.9 99 50.5
COL.COLO4_23330 Corchorus olitorius HOM05D002087 ORTHO05D002101 8.7e-11 70.5 102 50.0
Phvul.001G207800 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 8.7e-11 70.5 103 46.6
Gohir.A08G076700 Gossypium hirsutum HOM05D002087 ORTHO05D002101 1.5e-10 69.7 103 51.5
Duzib133G1126 Durio zibethinus HOM05D002087 ORTHO05D002101 1.9e-10 69.3 102 51.0
Eucgr.H01104 Eucalyptus grandis HOM05D002087 ORTHO05D002101 1.9e-10 69.3 98 49.0
MD03G1289900 Malus domestica HOM05D002087 ORTHO05D002101 1.9e-10 69.3 106 50.9
AT4G02380 Arabidopsis thaliana HOM05D002087 ORTHO05D002101 3.3e-10 68.6 95 49.5
Gohir.A08G076800 Gossypium hirsutum HOM05D002087 ORTHO05D002101 3.3e-10 68.6 95 50.5
Dinv19683 Davidia involucrata HOM05D002087 ORTHO05D002101 5.6e-10 67.8 107 46.7
Gorai.004G090800 Gossypium raimondii HOM05D002087 ORTHO05D002101 5.6e-10 67.8 95 49.5
arahy.Tifrunner.gnm1.ann1.V9JC55 Arachis hypogaea HOM05D002087 ORTHO05D002101 7.3e-10 67.4 99 45.5
Duzib138G0723 Durio zibethinus HOM05D002087 ORTHO05D002101 7.3e-10 67.4 100 47.0
Gorai.004G090700 Gossypium raimondii HOM05D002087 ORTHO05D002101 7.3e-10 67.4 100 51.0
Gohir.D08G138900 Gossypium hirsutum HOM05D002087 ORTHO05D002101 9.6e-10 67.0 101 47.5
Gorai.004G142600 Gossypium raimondii HOM05D002087 ORTHO05D002101 9.6e-10 67.0 101 47.5
TPR.G25812 Trifolium pratense HOM05D002087 ORTHO05D002101 1.3e-09 66.6 67 46.3
vmacro02442 Vaccinium macrocarpon HOM05D002087 ORTHO05D002101 1.3e-09 66.6 100 44.0
BcaB05g23621 Brassica carinata HOM05D002087 ORTHO05D002101 1.6e-09 66.2 95 48.4
Sopen06g003900 Solanum pennellii HOM05D002087 ORTHO05D002101 1.6e-09 66.2 95 47.4
AL6G50740 Arabidopsis lyrata HOM05D002087 ORTHO05D002101 2.1e-09 65.9 101 49.5
Eucgr.H01103 Eucalyptus grandis HOM05D002087 ORTHO05D002101 2.1e-09 65.9 96 50.0
Solyc06g009140.3 Solanum lycopersicum HOM05D002087 ORTHO05D002101 2.1e-09 65.9 95 46.3
Actinidia25806 Actinidia chinensis HOM05D002087 ORTHO05D002101 3.6e-09 65.1 100 48.0
TAR362G1222 Trochodendron aralioides HOM05D002087 ORTHO05D002101 3.6e-09 65.1 104 47.1
GSVIVG01028033001 Vitis vinifera HOM05D002087 ORTHO05D002101 3.6e-09 65.1 95 46.3
Cpa.g.sc9.251 Carica papaya HOM05D002087 ORTHO05D002101 4.8e-09 64.7 101 45.5
Eucgr.H01105 Eucalyptus grandis HOM05D002087 ORTHO05D002101 4.8e-09 64.7 93 48.4
BcaB01g02052 Brassica carinata HOM05D002087 ORTHO05D002101 6.2e-09 64.3 100 48.0
Gohir.D08G086400 Gossypium hirsutum HOM05D002087 ORTHO05D002101 6.2e-09 64.3 95 48.4
Ciclev10023029m.g Citrus clementina HOM05D002087 ORTHO05D002101 8.1e-09 63.9 106 46.2
Gohir.A08G117900 Gossypium hirsutum HOM05D002087 ORTHO05D002101 8.1e-09 63.9 94 44.7
Oeu010665.1 Olea europaea HOM05D002087 ORTHO05D002101 8.1e-09 63.9 103 46.6
vmacro15151 Vaccinium macrocarpon HOM05D002087 ORTHO05D002101 1.1e-08 63.5 103 47.6
Actinidia14332 Actinidia chinensis HOM05D002087 ORTHO05D002101 1.4e-08 63.2 101 47.5
Rhsim13G0009300 Rhododendron simsii HOM05D002087 ORTHO05D002101 1.4e-08 63.2 97 43.3
Carub.0006s3478 Capsella rubella HOM05D002087 ORTHO05D002101 1.8e-08 62.8 94 45.7
ClCG09G005640 Citrullus lanatus HOM05D002087 ORTHO05D002101 1.8e-08 62.8 107 46.7
Manes.01G220400 Manihot esculenta HOM05D002087 ORTHO05D002101 1.8e-08 62.8 88 43.2
A09p01850 Brassica napus HOM05D002087 ORTHO05D002101 2.4e-08 62.4 94 45.7
PGR119G0329 Punica granatum HOM05D002087 ORTHO05D002101 2.4e-08 62.4 96 45.8
BcaNung04047 Brassica carinata HOM05D002087 ORTHO05D002101 3.1e-08 62.0 94 45.7
C09p01890 Brassica napus HOM05D002087 ORTHO05D002101 3.1e-08 62.0 94 45.7
BolC9t53124H Brassica oleracea HOM05D002087 ORTHO05D002101 3.1e-08 62.0 94 45.7
Aa31LG5G2020 Aethionema arabicum HOM05D002087 ORTHO05D002101 4.0e-08 61.6 93 45.2
Manes.05G061300 Manihot esculenta HOM05D002087 ORTHO05D002101 4.0e-08 61.6 103 42.7
Nitab4.5_0000116g0500 Nicotiana tabacum HOM05D002087 ORTHO05D002101 4.0e-08 61.6 109 45.9
Oeu046672.1 Olea europaea HOM05D002087 ORTHO05D002101 4.0e-08 61.6 101 44.6
Sp6g02260 Schrenkiella parvula HOM05D002087 ORTHO05D002101 4.0e-08 61.6 94 46.8
Hma1.2p1_0494F.1_g165250 Hydrangea macrophylla HOM05D002087 ORTHO05D002101 5.3e-08 61.2 102 44.1
Hund18179 Selenicereus undatus HOM05D002087 ORTHO05D002101 5.3e-08 61.2 80 47.5
BcaB01g02442 Brassica carinata HOM05D002087 ORTHO05D002101 6.9e-08 60.8 95 46.3
BcaC01g06764 Brassica carinata HOM05D002087 ORTHO05D002101 6.9e-08 60.8 95 46.3
PGR003G0016 Punica granatum HOM05D002087 ORTHO05D002101 6.9e-08 60.8 88 48.9
PGR044G0391 Punica granatum HOM05D002087 ORTHO05D002101 6.9e-08 60.8 88 48.9
TAR633G2750 Trochodendron aralioides HOM05D002087 ORTHO05D002101 6.9e-08 60.8 106 44.3
CARHR250570 Cardamine hirsuta HOM05D002087 ORTHO05D002101 9.0e-08 60.5 94 42.6
CiPaw.08G094400 Carya illinoinensis HOM05D002087 ORTHO05D002101 9.0e-08 60.5 103 40.8
Nitab4.5_0002820g0100 Nicotiana tabacum HOM05D002087 ORTHO05D002101 9.0e-08 60.5 100 45.0
Aqoxy2G02929 Aquilegia oxysepala HOM05D002087 ORTHO05D002101 1.2e-07 60.1 103 42.7
Thhalv10029091m.g Eutrema salsugineum HOM05D002087 ORTHO05D002101 1.2e-07 60.1 94 45.7
BcaC01g06763 Brassica carinata HOM05D002087 ORTHO05D002101 1.5e-07 59.7 93 45.2
BolC3t16079H Brassica oleracea HOM05D002087 ORTHO05D002101 1.5e-07 59.7 93 45.2
Sp7g14360 Schrenkiella parvula HOM05D002087 ORTHO05D002101 1.5e-07 59.7 100 38.0
TWI23G0703 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 1.5e-07 59.7 77 50.6
A03p31110 Brassica napus HOM05D002087 ORTHO05D002101 2.0e-07 59.3 93 44.1
BraA03t12288Z Brassica rapa HOM05D002087 ORTHO05D002101 2.0e-07 59.3 93 44.1
Dinv29766 Davidia involucrata HOM05D002087 ORTHO05D002101 2.0e-07 59.3 93 39.8
Gorai.004G052200 Gossypium raimondii HOM05D002087 ORTHO05D002101 2.6e-07 58.9 95 45.3
Oeu048333.1 Olea europaea HOM05D002087 ORTHO05D002101 2.6e-07 58.9 106 46.2
Peaxi162Scf00001g00412 Petunia axillaris HOM05D002087 ORTHO05D002101 2.6e-07 58.9 98 44.9
PGSC0003DMG400031788 Solanum tuberosum HOM05D002087 ORTHO05D002101 2.6e-07 58.9 102 47.1
Actinidia21040 Actinidia chinensis HOM05D002087 ORTHO05D002101 3.4e-07 58.5 95 47.4
CAN.G472.12 Capsicum annuum HOM05D002087 ORTHO05D002101 3.4e-07 58.5 108 43.5
PSO407G0377 Papaver somniferum HOM05D002087 ORTHO05D002101 3.4e-07 58.5 96 34.4
Potri.002G203500 Populus trichocarpa HOM05D002087 ORTHO05D002101 4.5e-07 58.2 88 39.8
TAR365G0110 Trochodendron aralioides HOM05D002087 ORTHO05D002101 4.5e-07 58.2 97 43.3
Gohir.D08G052100 Gossypium hirsutum HOM05D002087 ORTHO05D002101 5.8e-07 57.8 95 44.2
MBI19_g43555_MAGBIO Magnolia biondii HOM05D002087 ORTHO05D002101 5.8e-07 57.8 103 42.7
MBI19_g46347_MAGBIO Magnolia biondii HOM05D002087 ORTHO05D002101 5.8e-07 57.8 103 42.7
Nitab4.5_0007333g0010 Nicotiana tabacum HOM05D002087 ORTHO05D002101 5.8e-07 57.8 100 40.0
Peaxi162Scf00399g00518 Petunia axillaris HOM05D002087 ORTHO05D002101 5.8e-07 57.8 101 43.6
TWI14G1194 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 5.8e-07 57.8 88 46.6
Gohir.A08G042300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 7.6e-07 57.4 95 44.2
Solyc09g075210.3 Solanum lycopersicum HOM05D002087 ORTHO05D002101 7.6e-07 57.4 97 43.3
Sopen09g030030 Solanum pennellii HOM05D002087 ORTHO05D002101 7.6e-07 57.4 102 46.1
PGSC0003DMG400017936 Solanum tuberosum HOM05D002087 ORTHO05D002101 7.6e-07 57.4 95 41.1
Sabra02G0155900 Salix brachista HOM05D002087 ORTHO05D002101 9.9e-07 57.0 88 39.8
TAR365G0861 Trochodendron aralioides HOM05D002087 ORTHO05D002101 9.9e-07 57.0 98 41.8
Aa31LG10G6230 Aethionema arabicum HOM05D002087 ORTHO05D002101 1.3e-06 56.6 105 38.1
Dinv44363 Davidia involucrata HOM05D002087 ORTHO05D002101 1.3e-06 56.6 77 44.2
HanXRQChr15g0465591 Helianthus annuus HOM05D002087 ORTHO05D002101 1.3e-06 56.6 92 44.6
BcaB01g02443 Brassica carinata HOM05D002087 ORTHO05D002101 1.7e-06 56.2 95 44.2
C03p37910 Brassica napus HOM05D002087 ORTHO05D002101 1.7e-06 56.2 98 41.8
PSO170G4228 Papaver somniferum HOM05D002087 ORTHO05D002101 1.7e-06 56.2 96 36.5
Rhsim01G0286200 Rhododendron simsii HOM05D002087 ORTHO05D002101 1.7e-06 56.2 96 45.8
Sed0009339 Sechium edule HOM05D002087 ORTHO05D002101 1.7e-06 56.2 106 41.5
Carub.0001s0193 Capsella rubella HOM05D002087 ORTHO05D002101 2.2e-06 55.8 95 43.2
CAN.G1280.4 Capsicum annuum HOM05D002087 ORTHO05D002101 2.2e-06 55.8 92 40.2
Lsat_1_v5_gn_9_5440 Lactuca sativa HOM05D002087 ORTHO05D002101 2.2e-06 55.8 94 43.6
PSO170G3454 Papaver somniferum HOM05D002087 ORTHO05D002101 2.2e-06 55.8 96 35.4
TAR365G1114 Trochodendron aralioides HOM05D002087 ORTHO05D002101 2.2e-06 55.8 98 40.8
Oeu011462.1 Olea europaea HOM05D002087 ORTHO05D002101 2.9e-06 55.5 100 41.0
TAR636G0371 Trochodendron aralioides HOM05D002087 ORTHO05D002101 2.9e-06 55.5 106 40.6
CsaV3_4G000880 Cucumis sativus L. HOM05D002087 ORTHO05D002101 3.8e-06 55.1 109 37.6
FAN27G2215 Fragaria x ananassa HOM05D002087 ORTHO05D002101 3.8e-06 55.1 103 43.7
Lsat_1_v5_gn_9_5460 Lactuca sativa HOM05D002087 ORTHO05D002101 3.8e-06 55.1 95 37.9
Manes.05G061400 Manihot esculenta HOM05D002087 ORTHO05D002101 3.8e-06 55.1 101 41.6
RcHm_v2.0_Chr6g0294191 Rosa chinensis HOM05D002087 ORTHO05D002101 3.8e-06 55.1 101 43.6
CSS0024122 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 4.9e-06 54.7 90 42.2
CSS0040472 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 4.9e-06 54.7 90 42.2
MELO3C017950.2 Cucumis melo HOM05D002087 ORTHO05D002101 4.9e-06 54.7 76 43.4
HanXRQChr15g0465601 Helianthus annuus HOM05D002087 ORTHO05D002101 4.9e-06 54.7 79 44.3
Oeu024406.1 Olea europaea HOM05D002087 ORTHO05D002101 6.4e-06 54.3 98 38.8
Hund05435 Selenicereus undatus HOM05D002087 ORTHO05D002101 6.4e-06 54.3 96 40.6
CAN.G1989.9 Capsicum annuum HOM05D002087 ORTHO05D002101 8.4e-06 53.9 92 42.4
CARHR002140 Cardamine hirsuta HOM05D002087 ORTHO05D002101 8.4e-06 53.9 95 40.0
TAR365G0147 Trochodendron aralioides HOM05D002087 ORTHO05D002101 8.4e-06 53.9 95 41.1


User provided reference genes

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