Gene: Carub.0001s0193
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0001s0193
- Transcript Identifier Carub.0001s0193.1
- Gene Type Coding gene
- Location scaffold_1 : 657556-657936 : negative
Gene Family Information
- ID HOM05D002087
- #Genes/#Species 319/88
- Phylogenetic origin
- ID ORTHO05D002101
- #Genes/#Species 317/88
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id Carub.0001s0193.v1.1
- pacid 39228243
- synonym Carubv10010737m.g
Descriptions
- Description PTHR33509:SF5 - LATE EMBRYOGENESIS ABUNDANT 3 (LEA3) FAMILY PROTEIN
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:2000028 | ISO | PLAZA Tree-based Orthology | regulation of photoperiodism, flowering | AT4G02380 |
| GO:0009737 | ISO | PLAZA Tree-based Orthology | response to abscisic acid | AT4G15910 |
| GO:0009723 | ISO | PLAZA Tree-based Orthology | response to ethylene | AT4G02380 |
| GO:0009646 | ISO | PLAZA Tree-based Orthology | response to absence of light | AT4G02380 |
| GO:1900424 | ISO | PLAZA Tree-based Orthology | regulation of defense response to bacterium | AT4G02380 |
| GO:0009625 | ISO | PLAZA Tree-based Orthology | response to insect | AT4G02380 |
| GO:0000302 | ISO | PLAZA Tree-based Orthology | response to reactive oxygen species | AT4G02380 |
| GO:0042542 | ISO | PLAZA Tree-based Orthology | response to hydrogen peroxide | AT4G02380 |
| GO:0009620 | ISO | PLAZA Tree-based Orthology | response to fungus | AT4G02380 |
| GO:0010150 | ISO | PLAZA Tree-based Orthology | leaf senescence | AT4G02380 |
| GO:1900150 | ISO | PLAZA Tree-based Orthology | regulation of defense response to fungus | AT4G02380 |
| GO:0006979 | ISO | PLAZA Tree-based Orthology | response to oxidative stress | AT4G02380 |
| GO:0009409 | ISO | PLAZA Tree-based Orthology | response to cold | AT4G15910 |
| GO:0048364 | ISO | PLAZA Tree-based Orthology | root development | AT4G02380 |
| GO:0009414 | ISO | PLAZA Integrative Orthology | response to water deprivation | AT1G02820 |
| GO:0009416 | ISO | PLAZA Tree-based Orthology | response to light stimulus | AT4G02380 |
| GO:0042631 | ISO | PLAZA Tree-based Orthology | cellular response to water deprivation | AT4G02380 |
| GO:0009631 | ISO | PLAZA Tree-based Orthology | cold acclimation | AT4G15910 |
| GO:0009611 | ISO | PLAZA Tree-based Orthology | response to wounding | AT4G02380 |
| GO:1900055 | ISO | PLAZA Tree-based Orthology | regulation of leaf senescence | AT4G02380 |
| GO:0009651 | ISO | PLAZA Integrative Orthology | response to salt stress | AT1G02820 |
| GO:1902074 | ISO | PLAZA Tree-based Orthology | response to salt | AT4G02380 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G02820 |
| GO:0005739 | ISO | PLAZA Tree-based Orthology | mitochondrion | AT4G15910 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G02820 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR004926 | Late embryogenesis abundant protein, LEA_3 subgroup |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |