Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 1.8e-306 1055.0 529 100.0
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 2.4e-282 974.9 570 89.3
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 2.6e-268 928.3 527 86.1
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 8.1e-262 906.7 525 84.6
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 3.9e-256 887.9 525 83.8
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 6.6e-256 887.1 527 84.4
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 9.9e-252 873.2 527 83.1
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 5.1e-248 860.9 518 81.5
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 8.1e-246 853.6 522 81.4
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 5.1e-240 834.3 517 81.2
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 3.1e-237 825.1 527 78.2
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 9.0e-237 823.5 527 76.9
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 9.0e-237 823.5 527 77.6
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 2.6e-236 822.0 527 76.7
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 2.6e-236 822.0 528 76.3
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 1.4e-234 816.2 527 76.1
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 5.6e-231 804.3 527 77.2
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 9.6e-231 803.5 528 75.2
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 1.3e-230 803.1 527 76.1
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 1.5e-228 796.2 527 75.5
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 2.0e-228 795.8 527 75.7
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 3.8e-227 791.6 527 74.2
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 2.1e-225 785.8 527 74.6
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 2.1e-225 785.8 527 75.0
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 4.6e-225 784.6 528 74.4
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 1.3e-224 783.1 530 75.1
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.8e-224 782.7 527 74.0
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 5.1e-224 781.2 526 73.8
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 8.7e-224 780.4 531 75.0
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 2.5e-223 778.9 527 74.8
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 5.7e-223 777.7 530 74.5
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 4.8e-222 774.6 529 73.7
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 4.8e-222 774.6 528 73.9
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.8e-221 772.7 527 73.8
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 3.1e-221 771.9 527 71.9
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 3.1e-221 771.9 529 72.4
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 2.0e-220 769.2 527 72.9
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 6.5e-219 764.2 527 73.6
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 7.9e-217 757.3 530 72.8
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 8.7e-216 753.8 528 70.8
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 1.9e-215 752.7 529 70.5
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 9.7e-215 750.4 517 73.7
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 1.3e-214 750.0 527 74.0
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 8.2e-214 747.3 527 71.3
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 2.4e-213 745.7 580 66.7
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 1.2e-212 743.4 530 70.8
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 8.5e-211 737.3 525 70.9
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 5.5e-210 734.6 525 70.7
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 7.2e-210 734.2 525 70.9
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 1.0e-208 730.3 528 69.1
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 3.0e-208 728.8 535 66.7
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 8.8e-208 727.2 531 68.9
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 2.6e-207 725.7 530 68.9
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 2.6e-207 725.7 531 68.5
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 3.3e-207 725.3 533 68.3
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 1.2e-204 716.8 528 67.6
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 1.4e-202 709.9 481 74.8
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 1.9e-202 709.5 538 65.8
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 4.2e-202 708.4 527 67.2
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 1.2e-201 706.8 499 72.5
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 6.1e-201 704.5 525 66.3
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 6.1e-201 704.5 517 69.1
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 1.4e-200 703.4 531 67.4
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 1.1e-199 700.3 528 67.8
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 6.3e-198 694.5 525 66.3
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 7.0e-197 691.0 527 66.2
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 1.0e-195 687.2 528 65.7
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.7e-195 686.4 526 65.2
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.9e-194 682.9 526 64.4
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 3.6e-193 678.7 527 64.3
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.4e-192 676.8 529 65.8
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 1.8e-192 676.4 537 65.0
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 6.7e-192 674.5 527 64.9
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 2.6e-191 672.5 529 64.7
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 1.3e-190 670.2 559 62.8
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 3.7e-190 668.7 527 64.9
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 8.2e-190 667.5 531 65.2
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 1.4e-189 666.8 529 64.8
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 2.4e-189 666.0 529 64.7
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 3.1e-189 665.6 531 65.2
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 4.1e-189 665.2 529 64.7
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 4.1e-189 665.2 526 64.8
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 4.1e-189 665.2 529 64.8
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 1.2e-188 663.7 536 64.6
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 2.0e-188 662.9 528 65.0
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 4.5e-188 661.8 528 64.6
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 4.5e-188 661.8 529 64.1
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 6.5e-187 657.9 526 62.9
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.5e-186 656.8 526 63.7
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 1.5e-186 656.8 524 64.1
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.2e-186 655.2 514 65.4
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 1.2e-185 653.7 519 64.9
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.2e-185 653.7 444 74.5
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.6e-185 653.3 530 64.3
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 2.1e-185 652.9 516 65.1
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 8.8e-184 647.5 548 62.0
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 2.8e-182 642.5 537 61.1
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 2.4e-181 639.4 524 62.2
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 1.3e-179 633.6 527 61.3
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 1.7e-179 633.3 442 71.0
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 7.2e-178 627.9 525 63.0
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 1.4e-176 623.6 528 61.2
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 2.3e-171 606.3 527 60.7
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 1.1e-170 604.0 527 59.2
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 7.3e-170 601.3 543 56.9
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 2.6e-167 592.8 442 66.7
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 5.4e-165 585.1 527 57.5
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 6.4e-158 561.6 462 62.8
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 8.3e-158 561.2 510 58.8
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 2.4e-144 516.5 368 71.7
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 8.1e-129 464.9 465 55.9
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 2.4e-125 453.4 403 58.3
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 9.3e-125 451.4 392 57.7
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 1.0e-123 448.0 539 46.4
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 6.4e-118 428.7 531 44.8
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 9.3e-117 424.9 515 44.7
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 1.9e-106 390.6 480 47.7
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 3.0e-99 366.7 489 43.1
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 3.4e-58 230.3 139 79.9
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 2.1e-52 211.1 442 36.9
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 1.6e-44 184.9 127 69.3
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 4.9e-33 146.7 150 56.7
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 6.0e-31 139.8 289 34.3
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.7e-25 121.7 79 72.2
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 1.2e-23 115.5 76 71.1
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 1.0e-22 112.5 72 72.2
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.1e-21 109.0 72 76.4
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 2.5e-21 107.8 104 58.7
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-21 107.5 143 37.8
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 2.8e-20 104.4 97 55.7
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 3.4e-18 97.4 250 30.4
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-10 71.2 52 55.8
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 1.4e-08 65.5 87 44.8
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 4.6e-07 60.5 41 68.3
MCO11G935 Micromonas commoda HOM05D005650 ORTHO05D007020 7.9e-07 59.7 137 31.4


User provided reference genes

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