Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L193ZY Arachis hypogaea HOM05D002085 ORTHO05D002103 7.8e-89 330.5 172 100.0
arahy.Tifrunner.gnm1.ann1.ZH7W5S Arachis hypogaea HOM05D002085 ORTHO05D002103 4.0e-37 158.7 136 66.2
arahy.Tifrunner.gnm1.ann1.46XLY6 Arachis hypogaea HOM05D002085 ORTHO05D002103 5.3e-37 158.3 136 65.4
Glyma.08G009000 Glycine max HOM05D002085 ORTHO05D002103 9.0e-29 131.0 93 72.0
Phvul.002G283000 Phaseolus vulgaris HOM05D002085 ORTHO05D002103 1.0e-27 127.5 104 65.4
Glyma.05G201500 Glycine max HOM05D002085 ORTHO05D002103 1.3e-27 127.1 92 71.7
Lj4g0005732 Lotus japonicus HOM05D002085 ORTHO05D002103 1.3e-27 127.1 123 58.5
Glyma.06G165602 Glycine max HOM05D002085 ORTHO05D002103 2.2e-27 126.3 95 69.5
Lalb_Chr07g0183731 Lupinus albus HOM05D002085 ORTHO05D002103 2.9e-27 125.9 123 57.7
Lj1g0008979 Lotus japonicus HOM05D002085 ORTHO05D002103 3.8e-27 125.6 147 49.0
Lalb_Chr08g0237451 Lupinus albus HOM05D002085 ORTHO05D002103 5.0e-27 125.2 104 65.4
Lj1g0016952 Lotus japonicus HOM05D002085 ORTHO05D002103 8.5e-27 124.4 123 57.7
VMungo0251G2654 Vigna mungo HOM05D002085 ORTHO05D002103 8.5e-27 124.4 85 72.9
Ca_16081_v3 Cicer arietinum L. HOM05D002085 ORTHO05D002103 2.5e-26 122.9 147 49.7
Medtr8g099900 Medicago truncatula HOM05D002085 ORTHO05D002103 7.2e-26 121.3 136 51.5
Ca_17580_v3 Cicer arietinum L. HOM05D002085 ORTHO05D002103 1.6e-25 120.2 97 66.0
Medtr3g498785 Medicago truncatula HOM05D002085 ORTHO05D002103 1.0e-24 117.5 146 47.9
Psat7g038840 Pisum sativum HOM05D002085 ORTHO05D002103 1.0e-24 117.5 95 64.2
TPR.G12979 Trifolium pratense HOM05D002085 ORTHO05D002103 1.0e-24 117.5 104 60.6
Psat5g054360 Pisum sativum HOM05D002085 ORTHO05D002103 2.3e-24 116.3 147 48.3
Phvul.009G164400 Phaseolus vulgaris HOM05D002085 ORTHO05D002103 1.1e-23 114.0 123 52.0
Duzib068G1277 Durio zibethinus HOM05D002085 ORTHO05D002103 9.7e-23 110.9 93 60.2
Ciclev10031219m.g Citrus clementina HOM05D002085 ORTHO05D002103 2.8e-22 109.4 136 46.3
Duzib205G0469 Durio zibethinus HOM05D002085 ORTHO05D002103 6.3e-22 108.2 93 60.2
Dinv11222 Davidia involucrata HOM05D002085 ORTHO05D002103 1.8e-21 106.7 136 44.9
TWI39G1242 Tripterygium wilfordii HOM05D002085 ORTHO05D002103 5.3e-21 105.1 93 54.8
TPR.G21500 Trifolium pratense HOM05D002085 ORTHO05D002103 6.9e-21 104.8 123 51.2
ClCG06G018260 Citrullus lanatus HOM05D002085 ORTHO05D002103 9.1e-21 104.4 136 41.9
CANSAT80G1382 Cannabis sativa HOM05D002085 ORTHO05D002103 1.5e-20 103.6 118 45.8
TPR.G27652 Trifolium pratense HOM05D002085 ORTHO05D002103 2.6e-20 102.8 112 53.6
GSVIVG01004931001 Vitis vinifera HOM05D002085 ORTHO05D002103 2.6e-20 102.8 85 63.5
CARHR157650 Cardamine hirsuta HOM05D002085 ORTHO05D002103 3.4e-20 102.4 136 44.9
Gohir.A12G193200 Gossypium hirsutum HOM05D002085 ORTHO05D002103 3.4e-20 102.4 112 50.0
TWI23G0364 Tripterygium wilfordii HOM05D002085 ORTHO05D002103 4.5e-20 102.1 118 45.8
CSS0003158 Camellia sinensis var. sinensis HOM05D002085 ORTHO05D002103 5.9e-20 101.7 93 57.0
Thecc.03G138100 Theobroma cacao HOM05D002085 ORTHO05D002103 5.9e-20 101.7 84 60.7
COL.COLO4_16700 Corchorus olitorius HOM05D002085 ORTHO05D002103 1.0e-19 100.9 109 51.4
THA.LOC104821535 Tarenaya hassleriana HOM05D002085 ORTHO05D002103 1.0e-19 100.9 84 59.5
Manes.06G125200 Manihot esculenta HOM05D002085 ORTHO05D002103 1.3e-19 100.5 82 61.0
Manes.14G046200 Manihot esculenta HOM05D002085 ORTHO05D002103 1.7e-19 100.1 136 43.4
QL03p049872 Quercus lobata HOM05D002085 ORTHO05D002103 1.7e-19 100.1 137 46.0
Ca_14554_v3 Cicer arietinum L. HOM05D002085 ORTHO05D002103 2.2e-19 99.8 74 70.3
vmacro16747 Vaccinium macrocarpon HOM05D002085 ORTHO05D002103 2.2e-19 99.8 115 47.0
Actinidia08902 Actinidia chinensis HOM05D002085 ORTHO05D002103 2.9e-19 99.4 93 54.8
Gohir.D12G195300 Gossypium hirsutum HOM05D002085 ORTHO05D002103 2.9e-19 99.4 112 48.2
Gorai.008G210000 Gossypium raimondii HOM05D002085 ORTHO05D002103 2.9e-19 99.4 112 48.2
AL5G28340 Arabidopsis lyrata HOM05D002085 ORTHO05D002103 5.0e-19 98.6 82 59.8
Dinv09215 Davidia involucrata HOM05D002085 ORTHO05D002103 5.0e-19 98.6 85 60.0
ATR0582G077 Amborella trichopoda HOM05D002085 ORTHO05D002103 6.5e-19 98.2 113 48.7
Haze_07118 Corylus avellana HOM05D002085 ORTHO05D002103 6.5e-19 98.2 136 41.9
Atru.chr6.1896 Acer truncatum HOM05D002085 ORTHO05D002103 1.1e-18 97.4 93 53.8
CsaV3_1G000170 Cucumis sativus L. HOM05D002085 ORTHO05D002103 1.1e-18 97.4 134 41.8
Cfa018725 Carpinus fangiana HOM05D002085 ORTHO05D002103 1.4e-18 97.1 124 43.5
MELO3C026172.2 Cucumis melo HOM05D002085 ORTHO05D002103 1.9e-18 96.7 134 41.0
Sabra12G0077400 Salix brachista HOM05D002085 ORTHO05D002103 1.9e-18 96.7 84 58.3
FAN08G2001 Fragaria x ananassa HOM05D002085 ORTHO05D002103 2.5e-18 96.3 85 57.6
Rhsim12G0180200 Rhododendron simsii HOM05D002085 ORTHO05D002103 2.5e-18 96.3 84 56.0
Aa31LG11G3030 Aethionema arabicum HOM05D002085 ORTHO05D002103 3.2e-18 95.9 85 56.5
Carub.0005s1500 Capsella rubella HOM05D002085 ORTHO05D002103 3.2e-18 95.9 136 42.6
DCAR_021410 Daucus carota HOM05D002085 ORTHO05D002103 3.2e-18 95.9 113 49.6
Potri.012G105000 Populus trichocarpa HOM05D002085 ORTHO05D002103 3.2e-18 95.9 93 53.8
Prupe.5G144000 Prunus persica HOM05D002085 ORTHO05D002103 4.2e-18 95.5 111 48.6
AT3G48830 Arabidopsis thaliana HOM05D002085 ORTHO05D002103 5.5e-18 95.1 82 57.3
Lj5A89G35 Lonicera japonica HOM05D002085 ORTHO05D002103 9.4e-18 94.4 84 58.3
TAR622G1337 Trochodendron aralioides HOM05D002085 ORTHO05D002103 9.4e-18 94.4 85 60.0
Thhalv10010292m.g Eutrema salsugineum HOM05D002085 ORTHO05D002103 1.2e-17 94.0 93 53.8
FvH4_5g09270 Fragaria vesca HOM05D002085 ORTHO05D002103 1.2e-17 94.0 93 52.7
Peaxi162Scf00171g01029 Petunia axillaris HOM05D002085 ORTHO05D002103 1.2e-17 94.0 93 51.6
Prupe.5G144300 Prunus persica HOM05D002085 ORTHO05D002103 1.2e-17 94.0 93 51.6
FAN18G0984 Fragaria x ananassa HOM05D002085 ORTHO05D002103 2.1e-17 93.2 85 55.3
Actinidia30597 Actinidia chinensis HOM05D002085 ORTHO05D002103 2.7e-17 92.8 94 52.1
CSS0044560 Camellia sinensis var. sinensis HOM05D002085 ORTHO05D002103 2.7e-17 92.8 85 52.9
Potri.015G104300 Populus trichocarpa HOM05D002085 ORTHO05D002103 2.7e-17 92.8 112 44.6
Nitab4.5_0007491g0010 Nicotiana tabacum HOM05D002085 ORTHO05D002103 4.7e-17 92.0 87 55.2
QL10p001008 Quercus lobata HOM05D002085 ORTHO05D002103 4.7e-17 92.0 93 50.5
RcHm_v2.0_Chr7g0189011 Rosa chinensis HOM05D002085 ORTHO05D002103 4.7e-17 92.0 93 52.7
FvH4_5g09150 Fragaria vesca HOM05D002085 ORTHO05D002103 6.1e-17 91.7 93 51.6
Nitab4.5_0004728g0100 Nicotiana tabacum HOM05D002085 ORTHO05D002103 6.1e-17 91.7 87 52.9
Oeu030641.2 Olea europaea HOM05D002085 ORTHO05D002103 6.1e-17 91.7 93 51.6
Solyc03g097830.3 Solanum lycopersicum HOM05D002085 ORTHO05D002103 6.1e-17 91.7 123 46.3
FAN13G1306 Fragaria x ananassa HOM05D002085 ORTHO05D002103 7.9e-17 91.3 93 52.7
HanXRQChr09g0273981 Helianthus annuus HOM05D002085 ORTHO05D002103 7.9e-17 91.3 93 51.6
Carub.0006s2144 Capsella rubella HOM05D002085 ORTHO05D002103 1.0e-16 90.9 94 51.1
Nn4g22180 Nelumbo nucifera HOM05D002085 ORTHO05D002103 1.0e-16 90.9 94 54.3
Rhsim12G0018600 Rhododendron simsii HOM05D002085 ORTHO05D002103 1.0e-16 90.9 98 52.0
Sp2g23540 Schrenkiella parvula HOM05D002085 ORTHO05D002103 1.0e-16 90.9 94 51.1
SGA_v2.0_scaffold72G24158 Striga asiatica HOM05D002085 ORTHO05D002103 1.0e-16 90.9 85 54.1
Sopen03g028570 Solanum pennellii HOM05D002085 ORTHO05D002103 1.4e-16 90.5 136 41.9
MD06G1133100 Malus domestica HOM05D002085 ORTHO05D002103 2.3e-16 89.7 93 48.4
Hund06123 Selenicereus undatus HOM05D002085 ORTHO05D002103 3.0e-16 89.4 95 51.6
PGSC0003DMG400030005 Solanum tuberosum HOM05D002085 ORTHO05D002103 3.9e-16 89.0 136 41.2
AL6G34960 Arabidopsis lyrata HOM05D002085 ORTHO05D002103 5.1e-16 88.6 94 51.1
CAN.G637.50 Capsicum annuum HOM05D002085 ORTHO05D002103 5.1e-16 88.6 125 43.2
AT5G23690 Arabidopsis thaliana HOM05D002085 ORTHO05D002103 1.1e-15 87.4 94 48.9
CsaV3_4G002360 Cucumis sativus L. HOM05D002085 ORTHO05D002103 1.1e-15 87.4 121 41.3
Migut.O00349 Erythranthe guttata HOM05D002085 ORTHO05D002103 1.1e-15 87.4 92 50.0
Sc10g0010730 Simmondsia chinensis HOM05D002085 ORTHO05D002103 1.1e-15 87.4 112 42.9
Sc10g0010820 Simmondsia chinensis HOM05D002085 ORTHO05D002103 1.1e-15 87.4 112 42.9
Solyc01g009670.4 Solanum lycopersicum HOM05D002085 ORTHO05D002103 1.5e-15 87.0 112 42.9
Sopen01g005190 Solanum pennellii HOM05D002085 ORTHO05D002103 1.5e-15 87.0 112 43.8
PGSC0003DMG400019856 Solanum tuberosum HOM05D002085 ORTHO05D002103 1.5e-15 87.0 136 40.4
A06p34590 Brassica napus HOM05D002085 ORTHO05D002103 2.0e-15 86.7 97 49.5
BraA06t26387Z Brassica rapa HOM05D002085 ORTHO05D002103 2.0e-15 86.7 97 49.5
CiPaw.05G103200 Carya illinoinensis HOM05D002085 ORTHO05D002103 2.0e-15 86.7 113 45.1
ECA232G2131 Erigeron canadensis HOM05D002085 ORTHO05D002103 2.0e-15 86.7 93 46.2
Cfa009431 Carpinus fangiana HOM05D002085 ORTHO05D002103 2.6e-15 86.3 136 40.4
BcaNung01847 Brassica carinata HOM05D002085 ORTHO05D002103 3.3e-15 85.9 97 48.5
BcaNung05211 Brassica carinata HOM05D002085 ORTHO05D002103 3.3e-15 85.9 97 48.5
C07p43900 Brassica napus HOM05D002085 ORTHO05D002103 3.3e-15 85.9 97 48.5
BolC7t44918H Brassica oleracea HOM05D002085 ORTHO05D002103 3.3e-15 85.9 97 48.5
Cc04_g09410 Coffea canephora HOM05D002085 ORTHO05D002103 3.3e-15 85.9 103 46.6
PSO017G1089 Papaver somniferum HOM05D002085 ORTHO05D002103 3.3e-15 85.9 85 54.1
vmacro01029 Vaccinium macrocarpon HOM05D002085 ORTHO05D002103 3.3e-15 85.9 117 44.4
Lj6A836G33 Lonicera japonica HOM05D002085 ORTHO05D002103 4.4e-15 85.5 105 44.8
ClCG07G011850 Citrullus lanatus HOM05D002085 ORTHO05D002103 7.4e-15 84.7 119 41.2
MELO3C017806.2 Cucumis melo HOM05D002085 ORTHO05D002103 7.4e-15 84.7 89 49.4
MD14G1149300 Malus domestica HOM05D002085 ORTHO05D002103 7.4e-15 84.7 93 47.3
AUR62005700 Chenopodium quinoa HOM05D002085 ORTHO05D002103 9.7e-15 84.3 94 50.0
PGR083G0388 Punica granatum HOM05D002085 ORTHO05D002103 9.7e-15 84.3 115 45.2
AUR62028855 Chenopodium quinoa HOM05D002085 ORTHO05D002103 1.3e-14 84.0 94 50.0
CiPaw.11G001700 Carya illinoinensis HOM05D002085 ORTHO05D002103 1.7e-14 83.6 93 47.3
HanXRQChr08g0210361 Helianthus annuus HOM05D002085 ORTHO05D002103 1.7e-14 83.6 137 39.4
Sed0004241 Sechium edule HOM05D002085 ORTHO05D002103 1.7e-14 83.6 119 40.3
CANSAT01G0009 Cannabis sativa HOM05D002085 ORTHO05D002103 2.2e-14 83.2 137 39.4
TWI36G0753 Tripterygium wilfordii HOM05D002085 ORTHO05D002103 2.2e-14 83.2 82 52.4
PSO478G0961 Papaver somniferum HOM05D002085 ORTHO05D002103 2.8e-14 82.8 85 51.8
Potri.003G164400 Populus trichocarpa HOM05D002085 ORTHO05D002103 3.7e-14 82.4 137 40.1
Ah.03g135630 Amaranthus hybridus HOM05D002085 ORTHO05D006555 4.8e-14 82.0 86 52.3
Haze_12482 Corylus avellana HOM05D002085 ORTHO05D002103 4.8e-14 82.0 111 44.1
Eucgr.G01958 Eucalyptus grandis HOM05D002085 ORTHO05D002103 4.8e-14 82.0 95 46.3
EL10Ac5g11321 Beta vulgaris HOM05D002085 ORTHO05D002103 8.2e-14 81.3 118 43.2
CARHR189860 Cardamine hirsuta HOM05D002085 ORTHO05D002103 8.2e-14 81.3 85 49.4
EL10Ac6g13592 Beta vulgaris HOM05D002085 ORTHO05D002103 1.1e-13 80.9 85 50.6
Nitab4.5_0001754g0030 Nicotiana tabacum HOM05D002085 ORTHO05D002103 1.1e-13 80.9 94 46.8
RcHm_v2.0_Chr3g0469071 Rosa chinensis HOM05D002085 ORTHO05D002103 1.1e-13 80.9 85 47.1
Aqoxy3G01834 Aquilegia oxysepala HOM05D002085 ORTHO05D002103 1.4e-13 80.5 85 52.9
Peaxi162Scf00234g00911 Petunia axillaris HOM05D002085 ORTHO05D002103 1.4e-13 80.5 119 41.2
ECA233G2879 Erigeron canadensis HOM05D002085 ORTHO05D002103 3.1e-13 79.3 85 45.9
HPP92_023091 Vanilla planifolia HOM05D002085 ORTHO05D002103 3.1e-13 79.3 112 42.9
Ah.11g049520 Amaranthus hybridus HOM05D002085 ORTHO05D002103 6.9e-13 78.2 155 36.1
Nitab4.5_0001782g0040 Nicotiana tabacum HOM05D002085 ORTHO05D002103 1.2e-12 77.4 94 45.7
Os04g0395900 Oryza sativa ssp. japonica HOM05D002085 ORTHO05D002103 2.0e-12 76.6 136 35.3
Aa31sc300G20 Aethionema arabicum HOM05D002085 ORTHO05D002103 7.7e-12 74.7 120 36.7
AT1G28090 Arabidopsis thaliana HOM05D002085 ORTHO05D002103 7.7e-12 74.7 137 35.0
Hund02490 Selenicereus undatus HOM05D002085 ORTHO05D002103 1.0e-11 74.3 104 41.3
A09p37970 Brassica napus HOM05D002085 ORTHO05D002103 1.3e-11 73.9 112 38.4
C05p26790 Brassica napus HOM05D002085 ORTHO05D002103 1.3e-11 73.9 112 38.4
BolC5t31400H Brassica oleracea HOM05D002085 ORTHO05D002103 1.3e-11 73.9 112 38.4
BraA09t39309Z Brassica rapa HOM05D002085 ORTHO05D002103 1.3e-11 73.9 112 38.4
BcaC05g26812 Brassica carinata HOM05D002085 ORTHO05D002103 1.7e-11 73.6 115 40.0
AL1G41610 Arabidopsis lyrata HOM05D002085 ORTHO05D002103 2.2e-11 73.2 110 39.1
Sabra03G0119600 Salix brachista HOM05D002085 ORTHO05D002103 3.8e-11 72.4 87 49.4
Sp1g24270 Schrenkiella parvula HOM05D002085 ORTHO05D002103 5.0e-11 72.0 114 36.8
Thhalv10007307m.g Eutrema salsugineum HOM05D002085 ORTHO05D002103 8.5e-11 71.2 113 37.2
THA.LOC104812601 Tarenaya hassleriana HOM05D002085 ORTHO05D002103 8.5e-11 71.2 86 43.0
Carub.0001s2652 Capsella rubella HOM05D002085 ORTHO05D002103 1.1e-10 70.9 111 36.9
CDE06G1763 Ceratophyllum demersum HOM05D002085 ORTHO05D002103 2.5e-10 69.7 63 58.7
CARHR027550 Cardamine hirsuta HOM05D002085 ORTHO05D002103 3.2e-10 69.3 111 38.7
Lsat_1_v5_gn_8_147080 Lactuca sativa HOM05D002085 ORTHO05D002103 3.2e-10 69.3 86 44.2
arahy.Tifrunner.gnm1.ann1.8W8UWC Arachis hypogaea HOM05D002015 ORTHO05D002395 7.2e-10 68.2 64 62.5
arahy.Tifrunner.gnm1.ann1.ES2NTH Arachis hypogaea HOM05D002015 ORTHO05D002395 9.4e-10 67.8 64 64.1
Zm00001eb084970 Zea mays HOM05D002085 ORTHO05D002103 1.6e-09 67.0 112 34.8
arahy.Tifrunner.gnm1.ann1.Y9036K Arachis hypogaea HOM05D002015 ORTHO05D002395 2.1e-09 66.6 64 62.5
Lsat_1_v5_gn_4_83980 Lactuca sativa HOM05D002085 ORTHO05D002103 2.1e-09 66.6 75 48.0
arahy.Tifrunner.gnm1.ann1.I05BI5 Arachis hypogaea HOM05D002015 ORTHO05D002395 2.7e-09 66.2 64 60.9
unitig_22.g6257 Utricularia gibba HOM05D002085 ORTHO05D002103 3.6e-09 65.9 112 32.1
SEGI_31194 Sequoiadendron giganteum HOM05D002085 ORTHO05D002103 1.5e-07 60.5 140 30.0
Lalb_Chr08g0245091 Lupinus albus HOM05D002015 ORTHO05D002395 2.8e-06 56.2 65 53.8
VMungo0464G0371 Vigna mungo HOM05D002015 ORTHO05D002395 2.8e-06 56.2 65 53.8
Phvul.008G096000 Phaseolus vulgaris HOM05D002015 ORTHO05D002395 6.3e-06 55.1 65 53.8
Ca_23315_v3 Cicer arietinum L. HOM05D002015 ORTHO05D002395 8.2e-06 54.7 64 54.7


User provided reference genes

Program Settings