Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 3.7e-177 624.8 316 100.0
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 3.2e-173 611.7 331 94.9
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 6.1e-148 527.7 328 82.6
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 2.0e-146 522.7 329 82.1
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 5.7e-146 521.2 329 82.1
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.3e-145 520.0 329 81.8
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 2.2e-145 519.2 329 81.8
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 8.2e-145 517.3 325 81.5
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 3.6e-140 501.9 326 79.4
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.4e-131 473.4 312 77.6
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 1.4e-128 463.4 323 73.7
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 4.2e-125 451.8 323 72.4
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 8.0e-124 447.6 323 71.5
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.0e-123 447.2 323 71.8
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 8.9e-123 444.1 329 72.0
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.5e-122 443.4 320 71.6
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 2.0e-122 443.0 324 71.3
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 4.4e-122 441.8 325 70.5
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 4.4e-122 441.8 321 70.7
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 9.8e-122 440.7 321 70.4
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.3e-121 440.3 329 70.2
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.7e-121 439.9 348 66.7
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 3.7e-121 438.7 325 70.2
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 4.9e-121 438.3 331 69.2
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.4e-120 436.8 334 70.4
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 4.1e-120 435.3 326 68.4
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 7.0e-120 434.5 323 67.5
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 2.0e-119 433.0 326 69.3
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 2.0e-119 433.0 334 68.6
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 2.7e-119 432.6 316 72.2
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.3e-118 430.3 337 69.1
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.9e-118 429.1 318 71.1
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 3.9e-118 428.7 341 67.4
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.9e-118 428.7 337 68.5
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 8.6e-118 427.6 341 64.8
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 8.6e-118 427.6 327 70.3
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.1e-117 427.2 322 68.0
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.5e-117 426.8 341 67.2
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.5e-117 426.8 327 70.0
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.9e-117 426.4 324 68.8
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.9e-117 426.4 324 68.8
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 2.5e-117 426.0 333 69.4
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 4.3e-117 425.2 329 66.9
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 5.6e-117 424.9 317 71.0
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 7.3e-117 424.5 349 66.5
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 2.1e-116 422.9 320 68.4
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.1e-115 419.1 355 63.4
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.2e-114 417.2 343 64.1
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 4.4e-114 415.2 326 66.0
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 9.8e-114 414.1 321 64.8
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.7e-113 413.3 321 65.1
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 6.4e-113 411.4 332 66.6
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.9e-112 409.8 322 66.1
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 3.2e-112 409.1 330 63.3
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 2.0e-111 406.4 336 66.1
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 4.6e-111 405.2 334 62.3
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 4.6e-111 405.2 313 67.1
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 4.6e-111 405.2 321 64.5
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.0e-110 404.1 323 67.5
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.0e-110 404.1 332 64.8
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.7e-110 403.3 321 63.6
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 1.7e-110 403.3 322 66.5
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 3.0e-110 402.5 334 62.0
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 8.6e-110 401.0 321 64.8
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 1.9e-109 399.8 330 62.1
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 5.6e-109 398.3 316 64.9
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 7.3e-109 397.9 323 63.2
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.2e-108 397.1 324 63.6
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 2.1e-108 396.4 335 62.7
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 2.8e-108 396.0 336 67.0
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 4.7e-108 395.2 315 64.1
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.4e-107 393.7 313 65.2
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 2.3e-107 392.9 326 63.5
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 2.0e-106 389.8 324 63.0
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 3.4e-106 389.0 301 66.8
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 3.4e-106 389.0 297 69.0
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.3e-105 387.1 320 64.4
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 8.3e-105 384.4 334 62.6
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 1.4e-104 383.6 327 64.2
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.9e-104 383.3 321 62.9
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 3.2e-104 382.5 324 62.3
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 7.1e-104 381.3 321 62.6
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 7.1e-104 381.3 324 62.3
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 2.7e-103 379.4 322 61.2
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 3.5e-103 379.0 278 71.9
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 3.9e-102 375.6 309 64.7
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 3.3e-101 372.5 319 62.7
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 1.6e-100 370.2 308 63.6
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 3.6e-100 369.0 329 60.2
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.8e-99 366.7 272 70.6
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 5.2e-99 365.2 250 73.6
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 6.8e-99 364.8 283 68.9
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 6.8e-99 364.8 315 61.9
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 6.8e-99 364.8 290 66.2
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 8.9e-99 364.4 315 61.9
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.0e-98 363.2 319 61.1
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 5.8e-98 361.7 322 61.5
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 7.6e-98 361.3 317 62.8
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 8.3e-97 357.8 315 61.6
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 4.1e-96 355.5 277 67.5
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 4.1e-96 355.5 351 56.1
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.0e-94 350.9 327 60.6
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.3e-94 350.5 324 59.6
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 1.4e-91 340.5 333 56.8
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.5e-90 337.0 266 66.9
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 2.0e-90 336.7 298 62.8
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 2.6e-90 336.3 283 66.1
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.8e-90 335.1 266 66.5
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 9.9e-90 334.3 316 57.3
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 4.2e-88 328.9 245 71.4
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.1e-85 320.9 273 63.0
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.1e-85 320.9 255 65.1
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.6e-84 317.0 339 55.2
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 3.6e-84 315.8 243 66.7
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 8.1e-84 314.7 261 64.0
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 2.4e-83 313.2 218 69.3
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.7e-81 307.0 295 55.3
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.7e-81 307.0 221 70.6
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.7e-78 297.0 322 53.7
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 3.0e-78 296.2 228 68.9
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 3.8e-73 279.3 194 77.8
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 6.4e-73 278.5 327 48.0
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 5.4e-72 275.4 251 62.2
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 7.1e-72 275.0 263 57.4
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.8e-70 270.4 304 51.3
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.7e-68 262.7 213 69.0
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.4e-67 260.8 223 64.1
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 5.3e-67 258.8 296 52.4
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 5.5e-64 248.8 212 61.8
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 2.3e-62 243.4 267 53.9
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.7e-62 241.9 221 58.8
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.7e-62 241.9 221 58.8
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.1e-61 241.1 228 58.3
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 2.8e-60 236.5 273 49.8
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 3.8e-57 226.1 173 61.3
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 2.5e-56 223.4 232 51.7
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 9.3e-56 221.5 223 56.5
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.6e-55 220.7 158 67.1
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 6.1e-55 218.8 191 62.8
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 2.5e-53 213.4 280 50.7
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 4.8e-52 209.1 140 71.4
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 4.1e-51 206.1 141 72.3
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 1.0e-46 191.4 206 55.8
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 1.3e-44 184.5 230 45.7
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 3.1e-43 179.9 230 44.8
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.1e-37 161.4 177 52.0
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.1e-37 161.4 177 52.0
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 1.5e-37 161.0 122 73.0
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 2.0e-37 160.6 176 52.3
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 2.0e-34 150.6 260 37.3
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 4.5e-34 149.4 186 51.6
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.8e-30 137.5 136 52.9
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.6e-29 133.7 114 57.9
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.3e-28 131.3 152 45.4
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 6.3e-28 129.0 174 50.6
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 1.8e-27 127.5 146 47.3
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 5.3e-27 125.9 101 70.3
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.6e-26 124.4 255 32.2
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 1.0e-25 121.7 108 63.0
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.2e-24 116.7 113 52.2
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 3.0e-22 110.2 298 28.9
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 3.0e-22 110.2 98 63.3
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 8.8e-22 108.6 78 65.4
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 4.1e-19 99.8 151 38.4
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.0e-18 97.4 62 69.4
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.5e-13 81.3 73 64.4
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 3.4e-13 80.1 67 61.2
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 1.7e-12 77.8 79 46.8
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.1e-11 75.1 75 44.0
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 1.4e-11 74.7 108 37.0
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 1.4e-11 74.7 176 35.8
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 4.1e-11 73.2 74 47.3
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 4.1e-11 73.2 74 47.3
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 5.4e-11 72.8 69 49.3
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 5.4e-11 72.8 69 49.3
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 7.0e-11 72.4 70 45.7
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 2.7e-10 70.5 99 37.4
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 3.3e-08 63.5 67 44.8
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 4.2e-08 63.2 73 41.1
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 4.2e-08 63.2 73 41.1
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 5.6e-08 62.8 98 32.7
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.8e-07 60.5 75 48.0
EL10Ac2g03558 Beta vulgaris HOM05D003601 ORTHO05D004896 4.7e-07 59.7 71 47.9
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 4.7e-07 59.7 70 45.7
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 1.0e-06 58.5 68 50.0
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.0e-06 58.5 89 46.1


User provided reference genes

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