Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 3.2e-165 585.1 318 100.0
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.0e-126 457.2 298 85.9
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 8.1e-116 421.0 289 78.2
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 6.4e-113 411.4 289 77.9
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.9e-112 409.8 289 77.9
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 9.2e-112 407.5 289 78.5
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.2e-111 407.1 289 75.4
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 2.1e-111 406.4 289 75.1
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 6.0e-111 404.8 289 73.0
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 3.9e-110 402.1 289 75.4
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 6.6e-110 401.4 289 74.4
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.1e-109 400.6 289 74.4
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.1e-109 400.6 289 76.5
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.5e-109 400.2 289 73.0
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.5e-109 400.2 290 74.1
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 2.5e-109 399.4 289 72.3
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 4.3e-109 398.7 289 74.0
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 5.6e-109 398.3 289 75.4
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 9.6e-109 397.5 289 72.0
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 4.7e-108 395.2 289 72.7
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 6.2e-108 394.8 281 77.6
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.8e-107 393.3 289 71.6
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.8e-107 393.3 289 75.4
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.8e-107 393.3 289 72.0
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 4.0e-107 392.1 274 78.5
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 6.9e-107 391.3 289 71.6
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 9.0e-107 391.0 289 74.4
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 9.0e-107 391.0 289 72.7
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 2.6e-106 389.4 289 73.0
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 2.6e-106 389.4 289 70.9
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 4.4e-106 388.7 289 72.3
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 5.8e-106 388.3 289 72.7
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 7.6e-106 387.9 289 72.7
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 9.9e-106 387.5 285 73.7
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.3e-105 387.1 289 71.3
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.7e-105 386.7 289 73.4
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.8e-105 385.6 289 72.7
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 6.4e-105 384.8 287 71.1
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.9e-104 383.3 289 72.0
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.2e-104 382.1 289 71.6
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 4.2e-104 382.1 289 69.9
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 7.1e-104 381.3 289 69.6
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 9.3e-104 380.9 286 72.4
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.6e-103 380.2 289 71.3
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.6e-103 380.2 289 71.3
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 2.1e-103 379.8 289 70.2
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.6e-103 378.6 289 70.9
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 6.0e-103 378.3 289 71.6
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 7.8e-103 377.9 294 70.4
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.9e-101 373.2 291 69.1
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.3e-101 372.5 287 69.0
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 4.3e-101 372.1 287 71.8
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 5.6e-101 371.7 287 71.8
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.6e-100 370.2 269 73.2
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 6.2e-100 368.2 286 69.2
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 6.9e-99 364.8 287 67.2
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.3e-97 360.5 287 67.6
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 2.9e-97 359.4 275 73.1
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 8.4e-97 357.8 287 67.2
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 5.4e-96 355.1 260 71.2
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.6e-95 353.6 261 73.6
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 3.5e-95 352.4 262 70.2
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 3.5e-95 352.4 269 69.5
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 4.6e-95 352.1 289 67.8
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.0e-94 350.9 260 70.8
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.3e-94 350.5 261 71.3
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 6.7e-94 348.2 321 60.4
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 7.4e-93 344.7 321 59.8
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 2.1e-92 343.2 268 66.8
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 1.4e-91 340.5 263 68.8
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 2.4e-91 339.7 257 72.4
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.4e-91 339.7 262 68.3
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 3.4e-90 335.9 287 67.2
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 5.8e-90 335.1 251 69.7
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 5.8e-90 335.1 268 66.0
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.2e-89 333.2 250 70.4
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 3.8e-89 332.4 241 71.8
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.4e-88 330.5 290 65.2
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.2e-88 328.9 261 68.2
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.2e-87 327.4 282 63.8
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.0e-86 322.8 251 69.3
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 3.9e-86 322.4 292 62.0
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.3e-85 319.3 251 68.9
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 4.3e-85 318.9 261 66.3
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 1.6e-84 317.0 244 71.3
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 2.0e-82 310.1 286 61.9
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 7.6e-82 308.1 263 63.1
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.4e-80 303.9 290 60.0
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.9e-80 303.5 289 60.6
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.9e-80 303.5 241 66.8
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 3.2e-80 302.8 262 63.0
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 2.7e-79 299.7 253 64.0
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.3e-78 297.4 261 62.8
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.3e-78 297.4 261 62.8
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 5.1e-78 295.4 261 61.7
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.5e-77 293.1 241 65.6
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 4.3e-77 292.4 291 56.4
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.6e-76 290.4 289 56.7
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 2.2e-76 290.0 288 59.4
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 6.3e-76 288.5 286 59.8
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 6.3e-76 288.5 273 60.8
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 5.0e-73 278.9 258 61.6
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.4e-72 277.3 253 61.7
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.2e-71 274.2 287 55.1
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 6.7e-70 268.5 256 60.9
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 2.5e-69 266.5 262 59.2
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 7.4e-69 265.0 279 54.1
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 4.8e-68 262.3 292 52.4
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.1e-67 261.2 290 52.8
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 1.1e-67 261.2 272 55.5
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 7.7e-66 255.0 255 56.5
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.2e-65 253.4 294 52.0
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 2.2e-65 253.4 232 61.6
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 6.5e-65 251.9 294 52.4
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 8.5e-65 251.5 263 55.1
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 9.4e-64 248.1 225 61.3
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 6.1e-63 245.4 238 58.8
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.5e-61 240.7 292 50.3
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.7e-60 236.1 277 50.5
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.8e-59 233.8 277 52.3
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.6e-58 229.9 292 49.3
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.5e-58 229.6 268 51.5
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.5e-58 229.6 243 50.6
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 6.5e-57 225.3 276 51.8
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 8.5e-57 224.9 228 53.9
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 5.5e-56 222.2 290 50.7
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 5.5e-56 222.2 290 50.7
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 7.2e-56 221.9 290 50.3
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 9.4e-56 221.5 290 50.3
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 8.0e-55 218.4 290 49.7
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.8e-54 217.2 290 48.3
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.0e-50 203.8 291 47.1
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.5e-50 203.0 290 46.6
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.2e-49 200.3 251 50.2
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 6.5e-49 198.7 293 46.4
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 5.5e-48 195.7 277 46.2
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 7.2e-48 195.3 289 40.8
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 9.4e-48 194.9 301 44.2
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 6.1e-47 192.2 290 45.2
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.0e-46 191.4 293 45.1
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.6e-45 186.8 289 41.5
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 5.7e-45 185.7 249 47.4
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 2.2e-44 183.7 265 47.2
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 2.2e-44 183.7 247 47.4
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 2.8e-44 183.3 286 40.9
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 3.7e-44 183.0 290 43.4
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 8.3e-44 181.8 226 49.1
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 1.4e-43 181.0 248 46.8
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.4e-43 181.0 276 41.7
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 3.1e-43 179.9 248 47.2
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 5.0e-41 172.6 176 56.2
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 2.1e-39 167.2 239 42.7
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.7e-39 166.8 254 42.1
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 8.0e-39 165.2 288 36.8
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.4e-38 164.5 185 49.7
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.1e-35 154.8 260 37.7
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 3.3e-32 143.3 266 40.2
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 4.2e-32 142.9 266 41.4
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 8.9e-30 135.2 148 52.7
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 7.8e-26 122.1 82 80.5
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 2.3e-22 110.5 221 36.7
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.2e-21 108.2 94 61.7
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.6e-18 97.8 280 32.5
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 3.5e-18 96.7 218 35.3
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 3.5e-18 96.7 218 35.3
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.7e-17 94.4 107 54.2
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 9.5e-16 88.6 230 34.8
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.8e-15 87.0 252 32.5
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 5.8e-13 79.3 88 53.4
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 3.0e-09 67.0 150 36.7


User provided reference genes

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