Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.62X1XK Arachis hypogaea HOM05D010736 ORTHO05D010111 1.7e-100 369.8 246 100.0
arahy.Tifrunner.gnm1.ann1.IS160S Arachis hypogaea HOM05D010736 ORTHO05D010111 1.7e-100 369.8 246 100.0
arahy.Tifrunner.gnm1.ann1.JYQV5P Arachis hypogaea HOM05D010736 ORTHO05D010111 5.1e-25 119.0 134 48.5
arahy.Tifrunner.gnm1.ann1.KB9TDA Arachis hypogaea HOM05D010736 ORTHO05D010111 5.1e-25 119.0 134 48.5
VMungo1215G0851 Vigna mungo HOM05D010736 ORTHO05D010111 2.8e-23 113.2 150 45.3
Phvul.002G115500 Phaseolus vulgaris HOM05D010736 ORTHO05D010111 4.0e-22 109.4 135 49.6
Lj2g0020887 Lotus japonicus HOM05D010736 ORTHO05D010111 2.0e-21 107.1 149 40.9
Glyma.11G084900 Glycine max HOM05D010736 ORTHO05D010111 1.3e-20 104.4 140 44.3
Ca_24971_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 9.3e-19 98.2 139 41.0
TPR.G8374 Trifolium pratense HOM05D010736 ORTHO05D010111 2.1e-18 97.1 107 44.9
Medtr5g023910 Medicago truncatula HOM05D010736 ORTHO05D010111 4.6e-18 95.9 194 34.5
Lalb_Chr09g0321241 Lupinus albus HOM05D010736 ORTHO05D010111 5.1e-17 92.4 62 64.5
Ca_24970_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 5.6e-16 89.0 59 59.3
MELO3C007971.2 Cucumis melo HOM05D008569 ORTHO05D010111 9.6e-16 88.2 136 41.2
Psat0s1262g0120 Pisum sativum HOM05D010736 ORTHO05D010111 1.3e-15 87.8 67 53.7
Psat2g149320 Pisum sativum HOM05D010736 ORTHO05D010111 1.6e-15 87.4 112 42.0
ClCG01G020850 Citrullus lanatus HOM05D008569 ORTHO05D010111 2.8e-15 86.7 136 41.2
TPR.G8399 Trifolium pratense HOM05D013440 ORTHO05D013937 5.3e-14 82.4 226 29.2
CsaV3_6G047820 Cucumis sativus L. HOM05D008569 ORTHO05D010111 9.0e-14 81.6 136 39.7
Psat0s1262g0240 Pisum sativum HOM05D010736 ORTHO05D010111 9.0e-14 81.6 52 61.5
C01p03340 Brassica napus HOM05D008569 ORTHO05D010111 2.0e-13 80.5 137 37.2
BolC1t00319H Brassica oleracea HOM05D008569 ORTHO05D010111 2.0e-13 80.5 137 37.2
AL7G15540 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 5.8e-13 79.0 158 37.3
Carub.0007s0469 Capsella rubella HOM05D008569 ORTHO05D010111 1.3e-12 77.8 141 39.7
AT4G35610 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 2.2e-12 77.0 151 39.7
CARHR243950 Cardamine hirsuta HOM05D008569 ORTHO05D010111 3.8e-12 76.3 77 50.6
Haze_03671 Corylus avellana HOM05D008569 ORTHO05D010111 3.8e-12 76.3 149 34.9
THA.LOC104820185 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 3.8e-12 76.3 143 36.4
CiPaw.07G003700 Carya illinoinensis HOM05D008569 ORTHO05D010111 4.9e-12 75.9 58 51.7
Thhalv10026068m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 4.9e-12 75.9 142 38.0
THA.LOC104820184 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 8.4e-12 75.1 133 35.3
Cpa.g.c32926 Carica papaya HOM05D008569 ORTHO05D010111 2.4e-11 73.6 138 37.0
Cfa007069 Carpinus fangiana HOM05D008569 ORTHO05D010111 2.4e-11 73.6 150 35.3
Sed0010976 Sechium edule HOM05D008569 ORTHO05D010111 2.4e-11 73.6 137 35.0
Carub.0007s0458 Capsella rubella HOM05D008569 ORTHO05D010111 3.2e-11 73.2 125 38.4
A01p02990 Brassica napus HOM05D008569 ORTHO05D010111 1.2e-10 71.2 65 47.7
BraA01t00282Z Brassica rapa HOM05D008569 ORTHO05D010111 1.2e-10 71.2 65 47.7
Sp7g33380 Schrenkiella parvula HOM05D008569 ORTHO05D010111 2.1e-10 70.5 146 37.0
BcaNung03645 Brassica carinata HOM05D008569 ORTHO05D010111 2.7e-10 70.1 51 52.9
BcaNung03648 Brassica carinata HOM05D008569 ORTHO05D010111 2.7e-10 70.1 51 52.9
A01p03020 Brassica napus HOM05D008569 ORTHO05D010111 3.5e-10 69.7 51 52.9
C01p03370 Brassica napus HOM05D008569 ORTHO05D010111 3.5e-10 69.7 51 52.9
BolC1t00322H Brassica oleracea HOM05D008569 ORTHO05D010111 3.5e-10 69.7 51 52.9
BraA01t00284Z Brassica rapa HOM05D008569 ORTHO05D010111 3.5e-10 69.7 51 52.9
AL7G15420 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 1.3e-09 67.8 60 43.3
Lalb_Chr05g0211881 Lupinus albus HOM05D010736 ORTHO05D010111 1.8e-09 67.4 65 49.2
Manes.02G113100 Manihot esculenta HOM05D008569 ORTHO05D010111 6.7e-09 65.5 50 54.0
Prupe.7G181100 Prunus persica HOM05D008569 ORTHO05D010111 8.7e-09 65.1 58 48.3
Sabra05G0082900 Salix brachista HOM05D008569 ORTHO05D010111 1.5e-08 64.3 55 50.9
Zm00001eb033660 Zea mays HOM05D000174 ORTHO05D001526 1.9e-08 63.9 53 54.7
QL06p052831 Quercus lobata HOM05D008569 ORTHO05D010111 2.5e-08 63.5 168 32.1
Potri.005G100300 Populus trichocarpa HOM05D008569 ORTHO05D010111 3.3e-08 63.2 135 31.9
HPP92_003504 Vanilla planifolia HOM05D000174 ORTHO05D001526 4.3e-08 62.8 93 39.8
MELO3C013717.2 Cucumis melo HOM05D008569 ORTHO05D010111 5.6e-08 62.4 108 35.2
CsaV3_3G000220 Cucumis sativus L. HOM05D008569 ORTHO05D010111 7.4e-08 62.0 108 34.3
Gohir.A03G209700 Gossypium hirsutum HOM05D000174 ORTHO05D001526 7.4e-08 62.0 60 50.0
HPP92_020708 Vanilla planifolia HOM05D000174 ORTHO05D001526 7.4e-08 62.0 61 47.5
Gohir.D02G231400 Gossypium hirsutum HOM05D000174 ORTHO05D001526 9.6e-08 61.6 60 50.0
Gorai.005G259000 Gossypium raimondii HOM05D000174 ORTHO05D001526 9.6e-08 61.6 60 50.0
QL06p053745 Quercus lobata HOM05D008569 ORTHO05D010111 9.6e-08 61.6 163 30.7
ClCG10G000200 Citrullus lanatus HOM05D008569 ORTHO05D010111 2.8e-07 60.1 108 33.3
AT4G35700 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 4.8e-07 59.3 156 30.8
Thhalv10026930m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 4.8e-07 59.3 151 35.1
CANSAT56G2339 Cannabis sativa HOM05D000174 ORTHO05D001526 6.2e-07 58.9 69 40.6
RcHm_v2.0_Chr6g0280711 Rosa chinensis HOM05D000174 ORTHO05D001526 6.2e-07 58.9 61 47.5
ClCG02G009940 Citrullus lanatus HOM05D000174 ORTHO05D001526 8.1e-07 58.5 117 40.2
Duzib264G0559 Durio zibethinus HOM05D019103 ORTHO05D010111 8.1e-07 58.5 154 33.1
Sed0003917 Sechium edule HOM05D008569 ORTHO05D010111 1.4e-06 57.8 109 32.1
Thecc.01G006600 Theobroma cacao HOM05D019103 ORTHO05D010111 1.4e-06 57.8 143 33.6
Duzib147G0625 Durio zibethinus HOM05D019103 ORTHO05D010111 1.8e-06 57.4 112 36.6
THA.LOC104819687 Tarenaya hassleriana HOM05D000174 ORTHO05D001526 3.1e-06 56.6 56 50.0
Ah.01g023730 Amaranthus hybridus HOM05D000174 ORTHO05D001526 4.0e-06 56.2 52 48.1
QL08p000516 Quercus lobata HOM05D000174 ORTHO05D000630 4.0e-06 56.2 41 58.5
Aa31LG2G14820 Aethionema arabicum HOM05D000174 ORTHO05D001526 5.3e-06 55.8 63 44.4
AUR62033207 Chenopodium quinoa HOM05D000174 ORTHO05D001526 5.3e-06 55.8 39 59.0
AUR62033209 Chenopodium quinoa HOM05D000174 ORTHO05D001526 5.3e-06 55.8 39 59.0
CsaV3_6G010150 Cucumis sativus L. HOM05D000174 ORTHO05D000198 5.3e-06 55.8 104 37.5
Oeu031633.1 Olea europaea HOM05D008569 ORTHO05D010111 5.3e-06 55.8 103 35.9
vmacro17301 Vaccinium macrocarpon HOM05D000174 ORTHO05D001526 5.3e-06 55.8 54 50.0
Cc10_g04030 Coffea canephora HOM05D000174 ORTHO05D001526 6.9e-06 55.5 57 45.6
PGR102G2978 Punica granatum HOM05D008569 ORTHO05D010111 6.9e-06 55.5 122 32.0


User provided reference genes

Program Settings