Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 8.8e-148 526.9 269 100.0
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 2.0e-144 515.8 281 94.3
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 4.3e-134 481.5 341 77.1
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 7.3e-134 480.7 282 87.9
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 3.6e-133 478.4 282 86.5
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 1.0e-132 476.9 282 85.8
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 1.4e-132 476.5 281 86.1
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 1.5e-131 473.0 282 85.1
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 3.4e-131 471.9 282 85.5
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 2.9e-130 468.8 282 84.0
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 4.9e-130 468.0 282 84.8
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 1.1e-129 466.8 282 84.0
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 2.7e-128 462.2 282 83.3
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 2.7e-128 462.2 280 81.4
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 2.7e-128 462.2 282 83.0
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 4.6e-128 461.5 282 80.5
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 4.6e-128 461.5 282 80.5
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 4.6e-128 461.5 282 84.0
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.0e-127 460.3 282 80.1
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 2.3e-127 459.1 282 81.2
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 3.0e-127 458.8 282 81.6
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 6.6e-127 457.6 282 80.5
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 6.6e-127 457.6 282 80.5
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 8.6e-127 457.2 280 80.7
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.6e-127 457.2 282 80.9
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.6e-127 457.2 282 81.2
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 8.6e-127 457.2 282 81.2
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 1.1e-126 456.8 282 80.1
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 3.3e-126 455.3 282 79.4
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 3.3e-126 455.3 282 81.6
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.3e-126 454.9 282 80.9
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 1.6e-125 453.0 282 80.5
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 2.8e-125 452.2 282 80.1
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 8.1e-125 450.7 282 80.1
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 2.3e-124 449.1 282 78.7
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 6.8e-124 447.6 282 77.7
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 4.4e-123 444.9 282 80.5
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 4.4e-123 444.9 282 78.4
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 7.5e-123 444.1 282 78.0
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 7.5e-123 444.1 282 78.4
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 9.8e-123 443.7 282 78.0
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 1.7e-122 443.0 282 77.7
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 8.3e-122 440.7 282 77.7
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 1.9e-121 439.5 282 78.0
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 2.4e-121 439.1 282 78.0
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 3.2e-121 438.7 293 74.7
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 4.1e-121 438.3 282 77.3
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 4.1e-121 438.3 282 76.6
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 7.1e-121 437.6 282 76.2
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 9.2e-121 437.2 282 77.0
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 1.6e-120 436.4 282 75.5
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 1.6e-120 436.4 282 76.2
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 7.8e-120 434.1 282 77.3
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 3.0e-119 432.2 273 78.0
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 1.1e-118 430.3 282 76.2
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 1.5e-118 429.9 283 77.4
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.6e-118 427.9 284 74.6
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 5.6e-118 427.9 277 77.6
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 9.5e-118 427.2 282 76.6
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 9.5e-118 427.2 283 76.0
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.2e-117 426.8 283 76.7
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 2.1e-117 426.0 282 75.9
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 6.2e-117 424.5 283 76.3
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 8.1e-117 424.1 269 76.6
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 1.8e-116 422.9 281 75.1
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 3.1e-116 422.2 283 75.6
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 6.8e-116 421.0 282 73.0
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 6.8e-116 421.0 288 75.3
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 2.0e-115 419.5 283 75.6
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 2.0e-115 419.5 282 73.0
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 4.4e-115 418.3 283 74.9
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 4.4e-115 418.3 283 75.3
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 5.8e-115 417.9 282 74.1
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 7.6e-115 417.5 282 77.7
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 9.9e-115 417.2 282 73.0
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 1.3e-114 416.8 282 72.3
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.9e-114 415.6 269 76.6
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 8.4e-114 414.1 282 72.3
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 8.4e-114 414.1 286 72.7
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 1.4e-113 413.3 290 71.4
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.9e-113 412.9 286 75.2
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.9e-113 412.9 266 78.6
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 3.2e-113 412.1 278 73.0
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 4.1e-113 411.8 286 74.5
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 4.1e-113 411.8 282 71.6
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 7.1e-113 411.0 286 74.8
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.2e-112 410.2 283 72.8
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 2.1e-112 409.5 286 74.5
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 2.1e-112 409.5 316 66.5
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 1.3e-111 406.8 285 75.4
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 1.3e-111 406.8 282 73.0
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 2.3e-111 406.0 286 73.4
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 5.1e-111 404.8 281 73.0
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 5.1e-111 404.8 269 76.2
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 5.1e-111 404.8 282 72.7
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 8.6e-111 404.1 286 72.7
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 1.1e-110 403.7 286 73.1
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 1.1e-110 403.7 286 73.1
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 1.9e-110 402.9 282 71.3
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 1.9e-110 402.9 286 73.1
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 2.5e-110 402.5 286 72.7
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 3.3e-110 402.1 329 69.9
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 3.3e-110 402.1 286 72.7
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 3.3e-110 402.1 325 64.6
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 3.3e-110 402.1 282 70.2
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 3.3e-110 402.1 311 67.2
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 9.6e-110 400.6 269 76.6
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.2e-109 400.2 279 73.8
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 2.8e-109 399.1 286 72.4
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 1.4e-108 396.7 266 72.2
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 2.4e-108 396.0 286 68.9
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 3.1e-108 395.6 272 74.6
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.2e-107 393.7 293 66.6
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 5.8e-107 391.3 266 72.2
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.7e-106 389.8 269 74.3
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 2.9e-106 389.0 276 72.1
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 2.9e-106 389.0 266 74.8
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 3.8e-106 388.7 267 72.3
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 4.2e-105 385.2 266 70.3
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.6e-104 383.3 282 67.0
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.6e-104 383.3 282 67.0
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 2.7e-104 382.5 295 67.8
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 4.6e-104 381.7 282 70.9
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 4.6e-104 381.7 282 70.9
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 5.1e-103 378.3 272 72.4
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 5.1e-103 378.3 283 68.6
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 6.6e-103 377.9 286 66.8
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 3.3e-102 375.6 240 76.2
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 1.4e-100 370.2 250 74.4
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 1.2e-99 367.1 247 74.5
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.7e-98 363.2 281 64.4
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 1.4e-97 360.1 276 69.2
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 4.6e-96 355.1 287 63.4
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 5.1e-95 351.7 283 61.5
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 1.3e-93 347.1 231 74.5
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 9.0e-92 340.9 283 63.6
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 1.2e-91 340.5 213 78.4
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 7.1e-89 331.3 223 73.5
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 9.3e-89 330.9 213 75.1
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.0e-87 327.4 266 61.3
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.0e-87 327.4 279 60.9
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.9e-87 325.5 258 67.1
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 1.3e-82 310.5 249 66.7
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 3.9e-79 298.9 267 57.7
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 2.4e-76 289.7 281 58.4
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 3.9e-71 272.3 283 53.7
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 1.4e-68 263.8 239 58.2
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 2.2e-66 256.5 213 57.3
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 1.4e-47 194.1 159 61.6
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 7.5e-46 188.3 313 42.5
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 1.4e-44 184.1 173 56.6
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.4e-44 184.1 282 45.7
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 1.8e-44 183.7 172 55.2
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.0e-42 175.6 211 51.7
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 1.1e-41 174.5 269 42.8
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 4.7e-40 169.1 167 54.5
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 8.8e-39 164.9 120 63.3
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.1e-32 143.7 122 60.7
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 3.1e-28 129.8 85 67.1
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 9.5e-25 118.2 270 37.0
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 2.8e-24 116.7 107 51.4
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 8.9e-23 111.7 267 36.0
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.5e-22 108.6 164 42.7
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.7e-21 107.5 166 39.2
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 6.4e-21 105.5 65 83.1
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 3.2e-20 103.2 220 31.8
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 8.0e-16 88.6 74 64.9
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-12 78.2 47 83.0
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 5.0e-10 69.3 94 40.4
SEGI_16571 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 5.2e-07 59.3 51 58.8


User provided reference genes

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