Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 4.7e-166 587.8 300 100.0
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 9.6e-143 510.4 300 89.7
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 9.9e-124 447.2 306 79.1
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 2.1e-121 439.5 309 75.7
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 1.1e-119 433.7 316 74.7
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 1.1e-117 427.2 317 73.5
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 1.7e-115 419.9 301 75.7
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 2.5e-114 416.0 304 75.0
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 2.7e-113 412.5 315 71.4
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 2.7e-113 412.5 305 72.5
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 1.6e-110 403.3 304 72.7
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 1.1e-95 354.0 313 61.0
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 1.1e-95 354.0 292 71.2
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 8.2e-94 347.8 325 60.0
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 1.4e-93 347.1 320 59.7
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 1.8e-93 346.7 324 59.3
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 6.9e-93 344.7 324 59.0
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 2.9e-91 339.3 317 59.3
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 1.4e-90 337.0 317 59.0
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 5.5e-90 335.1 330 59.4
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 4.7e-89 332.0 327 58.4
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 7.9e-89 331.3 332 58.4
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 1.1e-87 327.4 332 56.0
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 3.3e-87 325.9 325 58.2
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 4.4e-87 325.5 308 59.4
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 1.3e-86 323.9 325 57.8
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 2.8e-86 322.8 312 60.3
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 3.7e-86 322.4 336 56.8
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 3.7e-86 322.4 323 57.6
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 4.8e-86 322.0 331 56.5
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 4.8e-86 322.0 325 57.5
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 1.1e-85 320.9 325 56.0
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 1.8e-85 320.1 326 54.9
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 2.4e-85 319.7 324 55.6
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 4.1e-85 318.9 318 57.2
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 1.2e-84 317.4 324 55.9
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 2.0e-84 316.6 316 58.5
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 2.6e-84 316.2 318 56.0
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 3.5e-84 315.8 302 58.3
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 4.5e-84 315.5 317 56.2
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 4.5e-84 315.5 310 57.7
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 5.9e-84 315.1 330 55.8
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 1.0e-83 314.3 315 57.5
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 1.3e-83 313.9 309 58.6
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 1.3e-83 313.9 309 59.2
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 8.5e-83 311.2 314 58.0
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 8.5e-83 311.2 314 58.0
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 1.1e-82 310.8 317 55.8
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.1e-82 310.8 314 56.7
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 1.1e-82 310.8 311 57.9
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 1.5e-82 310.5 322 55.3
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.9e-82 310.1 314 57.3
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 4.2e-82 308.9 321 55.5
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 7.2e-82 308.1 321 54.5
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 3.6e-81 305.8 317 54.6
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 3.6e-81 305.8 313 55.6
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 4.7e-81 305.4 322 54.3
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 4.7e-81 305.4 307 56.4
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.0e-80 304.3 326 55.2
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.8e-80 303.5 326 54.9
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 1.8e-80 303.5 323 56.0
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 5.2e-80 302.0 328 54.0
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 6.7e-80 301.6 325 52.9
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 9.7e-79 297.7 332 53.6
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 1.3e-78 297.4 332 53.3
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 1.7e-78 297.0 325 53.8
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 1.7e-78 297.0 325 53.8
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 2.8e-78 296.2 316 56.0
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 4.8e-78 295.4 334 52.1
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 6.3e-78 295.0 306 56.5
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 8.2e-78 294.7 306 54.6
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 1.1e-77 294.3 307 56.0
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 5.3e-77 292.0 307 55.0
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 1.2e-76 290.8 308 54.5
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 1.6e-76 290.4 302 54.6
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 1.6e-76 290.4 305 56.1
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 1.6e-76 290.4 305 56.1
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 3.5e-76 289.3 306 56.2
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 5.9e-76 288.5 301 54.8
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 9.4e-74 281.2 302 55.3
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 1.6e-73 280.4 312 53.2
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 2.7e-73 279.6 326 50.6
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 3.6e-73 279.3 369 47.7
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 4.7e-73 278.9 314 53.8
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 1.0e-72 277.7 305 50.5
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 5.7e-71 271.9 331 52.0
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 8.3e-70 268.1 319 49.5
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 8.3e-70 268.1 323 50.8
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 1.8e-69 266.9 307 52.4
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 3.1e-69 266.2 335 49.6
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 9.1e-69 264.6 335 48.7
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 2.7e-68 263.1 333 48.3
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 5.9e-68 261.9 303 50.8
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 1.1e-66 257.7 334 47.3
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 1.9e-66 256.9 305 52.5
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 9.4e-66 254.6 309 49.2
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 7.5e-63 245.0 411 42.1
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 1.0e-59 234.6 319 44.5
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 2.3e-59 233.4 319 44.5
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 2.5e-58 229.9 169 67.5
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 5.6e-58 228.8 172 64.5
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 6.8e-56 221.9 300 43.0
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 6.8e-56 221.9 323 44.0
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 2.2e-46 190.3 300 42.0
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 4.6e-44 182.6 302 36.8
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 1.2e-41 174.5 131 64.9
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 6.8e-40 168.7 266 41.4
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 1.0e-35 154.8 323 35.9
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 1.0e-35 154.8 298 39.3
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 1.1e-34 151.4 319 35.1
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 6.8e-32 142.1 336 33.6
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 8.9e-32 141.7 326 34.4
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 4.1e-29 132.9 337 32.0
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 2.3e-27 127.1 138 46.4
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 3.9e-27 126.3 262 38.2
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 3.6e-25 119.8 128 45.3
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 2.4e-24 117.1 142 44.4
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 2.1e-20 104.0 215 37.7
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 6.0e-20 102.4 80 67.5
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.0e-19 101.7 215 37.7
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 1.3e-19 101.3 57 70.2
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 3.0e-19 100.1 206 38.8
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 1.5e-18 97.8 57 66.7
Os01g0583300 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D300111 6.2e-09 65.9 52 63.5
GSVIVG01008148001 Vitis vinifera HOM05D006355 ORTHO05D000948 1.3e-06 58.2 68 48.5


User provided reference genes

Program Settings