Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I3FRE1 Arachis hypogaea HOM05D003159 ORTHO05D003780 2.5e-47 191.8 101 100.0
arahy.Tifrunner.gnm1.ann1.H397QS Arachis hypogaea HOM05D003159 ORTHO05D003780 1.3e-30 136.3 101 74.3
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 2.2e-30 135.6 98 76.5
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 2.2e-30 135.6 98 76.5
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 1.8e-29 132.5 98 74.5
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 5.3e-29 131.0 98 75.5
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 5.3e-29 131.0 98 75.5
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 1.2e-28 129.8 98 73.5
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 3.4e-28 128.3 98 74.5
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 5.9e-28 127.5 98 71.4
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 1.0e-27 126.7 98 71.4
Cpa.g.sc162.4 Carica papaya HOM05D003159 ORTHO05D003780 1.9e-26 122.5 98 71.4
arahy.Tifrunner.gnm1.ann1.EY0MZ8 Arachis hypogaea HOM05D000422 ORTHO05D010939 2.5e-26 122.1 65 95.4
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 2.5e-26 122.1 98 69.4
Glyma.01G101050 Glycine max HOM05D003159 ORTHO05D003780 3.2e-26 121.7 98 69.4
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 5.5e-26 120.9 98 71.4
Actinidia06777 Actinidia chinensis HOM05D003159 ORTHO05D003780 2.1e-25 119.0 98 67.3
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 2.1e-25 119.0 98 66.3
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 2.7e-25 118.6 98 65.3
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 3.6e-25 118.2 98 68.4
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 3.6e-25 118.2 98 67.3
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 3.6e-25 118.2 98 67.3
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 3.6e-25 118.2 98 67.3
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 4.6e-25 117.9 98 66.3
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 4.6e-25 117.9 98 66.3
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 6.1e-25 117.5 98 66.3
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 6.1e-25 117.5 98 65.3
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 6.1e-25 117.5 98 68.4
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 7.9e-25 117.1 114 63.2
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 1.0e-24 116.7 98 67.3
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 1.4e-24 116.3 99 65.7
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 1.4e-24 116.3 98 66.3
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 1.4e-24 116.3 98 65.3
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 1.4e-24 116.3 98 65.3
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 1.4e-24 116.3 98 69.4
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 1.4e-24 116.3 98 67.3
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.4e-24 116.3 98 65.3
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 1.4e-24 116.3 98 67.3
Sabra19G0025200 Salix brachista HOM05D003159 ORTHO05D003780 1.4e-24 116.3 106 63.2
Sabra19G0025600 Salix brachista HOM05D003159 ORTHO05D003780 1.4e-24 116.3 106 63.2
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 1.8e-24 115.9 98 68.4
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 1.8e-24 115.9 98 65.3
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 1.8e-24 115.9 98 67.3
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 1.8e-24 115.9 98 67.3
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 1.8e-24 115.9 98 69.4
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 2.3e-24 115.5 98 64.3
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 2.3e-24 115.5 98 64.3
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 2.3e-24 115.5 98 64.3
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 2.3e-24 115.5 98 64.3
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 2.3e-24 115.5 98 67.3
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 2.3e-24 115.5 98 66.3
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 2.3e-24 115.5 98 66.3
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 2.3e-24 115.5 98 66.3
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 2.3e-24 115.5 98 67.3
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 2.3e-24 115.5 98 67.3
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 3.0e-24 115.2 98 63.3
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 3.0e-24 115.2 98 67.3
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 3.0e-24 115.2 98 64.3
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 3.0e-24 115.2 98 64.3
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 3.0e-24 115.2 98 64.3
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 3.0e-24 115.2 98 64.3
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 3.0e-24 115.2 98 64.3
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 3.0e-24 115.2 98 64.3
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 3.0e-24 115.2 98 63.3
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 3.0e-24 115.2 98 68.4
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 3.0e-24 115.2 98 67.3
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 3.0e-24 115.2 98 65.3
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 3.0e-24 115.2 98 67.3
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 3.9e-24 114.8 98 66.3
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 3.9e-24 114.8 98 68.4
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 3.9e-24 114.8 98 65.3
Sabra19G0025000 Salix brachista HOM05D003159 ORTHO05D003780 3.9e-24 114.8 98 64.3
Sabra19G0025100 Salix brachista HOM05D003159 ORTHO05D003780 3.9e-24 114.8 98 64.3
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 5.1e-24 114.4 98 64.3
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 5.1e-24 114.4 98 66.3
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 5.1e-24 114.4 98 62.2
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 6.7e-24 114.0 98 67.3
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 8.8e-24 113.6 98 66.3
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 8.8e-24 113.6 98 67.3
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 1.1e-23 113.2 98 65.3
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.1e-23 113.2 98 67.3
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.1e-23 113.2 98 67.3
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.1e-23 113.2 98 67.3
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 1.1e-23 113.2 98 67.3
Oeu054532.1 Olea europaea HOM05D003159 ORTHO05D003780 1.1e-23 113.2 98 65.3
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 1.1e-23 113.2 98 66.3
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 1.1e-23 113.2 100 67.0
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 1.5e-23 112.8 98 61.2
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 1.5e-23 112.8 98 67.3
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 1.5e-23 112.8 98 66.3
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 1.5e-23 112.8 98 64.3
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 2.0e-23 112.5 98 65.3
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 2.5e-23 112.1 98 66.3
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 2.5e-23 112.1 98 65.3
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 3.3e-23 111.7 98 64.3
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 3.3e-23 111.7 98 65.3
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 4.3e-23 111.3 98 66.3
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 5.7e-23 110.9 111 60.4
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 5.7e-23 110.9 98 65.3
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 5.7e-23 110.9 98 65.3
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 7.4e-23 110.5 98 63.3
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 9.7e-23 110.2 98 63.3
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 9.7e-23 110.2 98 63.3
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 1.3e-22 109.8 98 61.2
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 1.3e-22 109.8 98 63.3
TAR362G1104 Trochodendron aralioides HOM05D003159 ORTHO05D003468 1.3e-22 109.8 98 63.3
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 1.7e-22 109.4 98 62.2
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 2.2e-22 109.0 98 62.2
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 2.2e-22 109.0 98 61.2
AT2G05140 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 2.8e-22 108.6 98 60.2
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 3.7e-22 108.2 98 61.2
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 8.2e-22 107.1 100 58.0
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.4e-21 106.3 98 61.2
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 1.8e-21 105.9 98 60.2
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.8e-21 105.9 98 60.2
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.8e-21 105.9 98 60.2
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 1.8e-21 105.9 98 64.3
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 2.4e-21 105.5 98 60.2
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 5.3e-21 104.4 98 58.2
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 5.3e-21 104.4 85 68.2
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 6.9e-21 104.0 123 53.7
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 2.0e-20 102.4 98 61.2
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 2.6e-20 102.1 98 58.2
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 3.4e-20 101.7 98 58.2
SEGI_34284 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 4.5e-20 101.3 98 56.1
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 1.3e-19 99.8 98 58.2
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.7e-19 99.4 98 57.1
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 2.9e-19 98.6 98 55.1
PSO782G2231 Papaver somniferum HOM05D003159 ORTHO05D003780 2.9e-19 98.6 98 55.1
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 8.5e-19 97.1 98 55.1
CDE05G0407 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 2.5e-18 95.5 98 58.2
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 3.2e-18 95.1 100 57.0
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 7.2e-18 94.0 98 57.1
Sed0012102 Sechium edule HOM05D003159 ORTHO05D003780 1.2e-17 93.2 98 54.1
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 3.6e-17 91.7 98 54.1
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 3.6e-17 91.7 98 54.1
Sabra19G0025400 Salix brachista HOM05D003159 ORTHO05D003780 1.4e-16 89.7 98 57.1
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 3.0e-16 88.6 98 54.1
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 3.0e-16 88.6 98 53.1
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 5.1e-16 87.8 82 59.8
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 6.7e-16 87.4 98 51.0
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 1.5e-15 86.3 85 55.3
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 2.6e-15 85.5 98 49.0
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 5.7e-15 84.3 98 56.1
Lalb_Chr06g0166701 Lupinus albus HOM05D003159 ORTHO05D003780 6.3e-14 80.9 45 88.9
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 1.1e-13 80.1 101 51.5
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.1e-13 80.1 98 46.9
Rhsim05G0177800 Rhododendron simsii HOM05D003159 ORTHO05D000029 4.1e-13 78.2 54 66.7
Sabra13G0039800 Salix brachista HOM05D003159 ORTHO05D003780 7.7e-12 73.9 54 64.8
Lalb_Chr06g0166731 Lupinus albus HOM05D003159 ORTHO05D003780 2.1e-09 65.9 73 54.8
TAR362G0177 Trochodendron aralioides HOM05D003159 ORTHO05D003780 6.7e-08 60.8 98 44.9
Psat1g051800 Pisum sativum HOM05D000001 ORTHO05D000003 1.1e-07 60.1 42 69.0
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 3.3e-07 58.5 98 42.9


User provided reference genes

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