Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 2031.9 1039 100.0
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1952.9 1005 99.4
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1710.3 1035 84.9
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1707.2 1043 84.6
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1673.7 1045 83.1
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1670.2 1044 83.4
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1670.2 1045 83.0
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1667.5 1054 82.6
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1667.5 1039 83.1
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1652.5 1075 80.9
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1641.3 1088 80.3
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1639.8 1055 81.5
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1639.0 1039 81.7
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1629.8 1056 81.5
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1627.8 1060 80.9
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1524.2 1058 75.3
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1521.1 1067 74.5
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1510.7 1028 75.8
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1509.2 1058 74.5
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1507.7 1049 74.5
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1500.7 1064 74.4
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1498.0 1049 74.8
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1497.6 1056 73.8
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1497.3 1052 73.6
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1494.6 1064 74.2
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1489.6 1049 74.1
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1488.4 1048 74.0
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1483.0 1050 74.4
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1482.6 1045 73.1
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1482.2 1057 73.7
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1481.1 1056 73.5
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1472.2 1036 73.5
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1471.4 1027 73.5
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1470.7 1057 73.5
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1468.4 1027 73.3
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1466.8 1047 73.2
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1461.0 1057 72.8
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1459.1 1065 72.7
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1456.8 1045 72.7
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1454.5 1050 72.7
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1447.2 1028 72.9
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1446.0 1107 70.5
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1442.9 1047 72.3
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1438.3 1051 72.5
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1434.9 1057 71.7
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1432.5 1058 70.4
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1421.0 1072 71.0
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1416.4 1054 71.8
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1415.6 1038 72.2
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1413.3 1060 69.9
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1412.5 1052 71.1
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1411.7 1043 71.9
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1411.4 1024 71.9
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1410.2 1053 71.0
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1407.1 1031 70.8
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1406.7 999 74.1
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1406.0 1044 71.2
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1404.8 1053 71.2
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1402.5 1059 70.6
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1402.1 1053 71.1
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1397.9 1031 70.7
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1390.2 1051 69.6
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1390.2 1051 69.6
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1389.4 1031 70.3
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1386.7 1050 69.6
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1382.1 1039 70.0
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1380.9 1028 70.2
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1379.4 1055 69.2
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1379.0 1057 68.5
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1376.3 1053 70.0
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1369.4 1060 68.8
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1367.1 1060 68.5
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1362.4 1034 69.1
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 1046 69.1
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 1052 68.4
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1360.9 1092 65.8
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1360.9 1058 67.7
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1356.7 1036 68.7
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1356.3 1049 68.7
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1350.9 1045 68.2
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1344.3 1047 68.5
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1344.3 1083 67.4
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1344.3 888 78.7
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1343.6 1063 67.5
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1341.3 1042 67.1
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1022 68.2
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1335.9 887 77.2
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1329.3 1048 66.4
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1323.5 957 71.9
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1322.0 1049 67.2
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1318.9 1059 66.9
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1317.4 1046 67.5
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1316.6 1050 67.0
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1315.8 1048 66.2
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1310.8 1051 67.2
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1308.5 913 75.5
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1302.0 1050 66.5
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1301.2 1051 66.8
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1300.8 1054 66.5
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1293.5 1051 66.2
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1290.8 1051 65.8
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1289.2 1045 66.0
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1288.9 1056 64.8
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1282.3 1054 66.3
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1274.6 1058 64.9
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1273.8 1059 65.0
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1272.3 1058 64.7
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1272.3 1059 65.1
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1264.6 1012 66.6
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1261.9 1053 64.5
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1261.1 1051 65.4
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1261.1 1058 63.6
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1256.9 1051 65.2
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1253.8 1032 65.2
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1251.5 1040 64.8
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1246.9 1047 65.0
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1234.9 1063 63.8
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1199.1 926 67.2
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1187.2 1035 61.7
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1166.4 1051 62.6
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1159.1 1045 61.9
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1153.3 1058 60.8
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1151.3 1018 60.5
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1142.9 1048 60.9
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1131.7 1059 58.3
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1115.9 1056 59.0
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1108.6 937 63.9
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1103.6 1091 56.6
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 2.0e-301 1039.3 1072 57.3
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 1.3e-295 1020.0 1017 56.7
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 7.3e-291 1004.2 929 58.2
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 5.1e-284 981.5 797 68.3
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.4e-265 920.2 855 59.2
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 4.5e-264 915.2 721 68.7
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 5.6e-259 898.3 1011 51.4
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 5.3e-257 891.7 739 67.4
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 2.3e-244 849.7 1063 47.6
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.8e-242 842.0 1009 48.3
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.5e-240 837.0 1005 48.2
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 6.9e-233 811.6 1034 45.9
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 1.3e-223 780.8 819 51.8
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 4.2e-222 775.8 815 53.4
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 5.9e-208 728.8 718 61.3
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.7e-194 684.1 929 44.8
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.4e-193 681.0 677 55.8
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 7.0e-185 652.1 853 48.3
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 4.3e-174 616.3 624 55.6
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 7.8e-160 568.9 876 40.6
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 6.9e-156 555.8 667 50.5
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.6e-155 553.9 626 51.9
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.6e-149 534.6 612 51.1
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 4.2e-137 493.4 1148 32.8
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 5.5e-121 439.9 424 54.5
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 7.9e-120 436.0 636 44.5
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.4e-116 425.2 313 70.3
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 3.3e-110 404.1 580 44.8
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 8.8e-103 379.4 236 80.1
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.0e-91 341.7 314 58.9
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 4.2e-89 334.0 268 66.8
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 7.3e-73 280.0 944 28.9
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 5.8e-70 270.4 254 58.3
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 3.8e-53 214.5 519 31.4
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 6.6e-50 203.8 969 23.5
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 7.3e-49 200.3 152 61.2
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 4.7e-48 197.6 237 47.3
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 5.2e-47 194.1 174 57.5
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.1e-44 186.4 155 60.6
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.1e-39 168.3 255 37.6
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.9e-33 149.1 181 49.7
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.0e-30 139.0 172 44.8
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.3e-24 119.8 148 46.6
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.0e-18 100.1 127 41.7
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.3e-18 99.0 132 44.7
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 8.7e-18 97.1 105 46.7
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 4.1e-15 88.2 67 68.7
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 9.0e-15 87.0 85 61.2
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 1.5e-09 69.7 60 66.7
Actinidia09594 Actinidia chinensis HOM05D003977 ORTHO05D004536 8.2e-08 63.9 47 72.3
Actinidia33992 Actinidia chinensis HOM05D003977 ORTHO05D004536 1.1e-07 63.5 46 73.9


User provided reference genes

Program Settings