Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 1.3e-186 656.4 348 100.0
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 9.9e-184 646.7 348 98.3
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 5.7e-147 524.6 349 81.1
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 6.9e-145 517.7 348 76.1
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 1.1e-142 510.4 351 79.5
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 1.2e-141 506.9 346 75.7
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 2.1e-141 506.1 347 76.9
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 2.7e-141 505.8 350 78.6
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 1.8e-140 503.1 349 75.6
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 1.3e-138 496.9 306 80.1
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 2.9e-135 485.7 297 81.1
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 1.3e-127 460.3 297 76.4
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 2.5e-126 456.1 349 67.0
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 7.2e-126 454.5 298 75.2
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 2.1e-125 453.0 362 69.3
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 3.6e-125 452.2 308 75.3
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 4.7e-125 451.8 303 73.6
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 6.1e-125 451.4 302 75.2
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 6.1e-125 451.4 307 75.9
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 2.3e-124 449.5 359 67.7
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 3.0e-124 449.1 304 74.3
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 4.0e-124 448.7 299 75.3
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 5.2e-124 448.4 362 68.5
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 6.8e-124 448.0 349 66.8
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 8.8e-124 447.6 309 71.8
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 1.2e-123 447.2 303 76.2
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 1.2e-123 447.2 349 65.9
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 1.5e-123 446.8 361 66.2
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 2.0e-123 446.4 307 73.9
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 2.6e-123 446.0 361 65.9
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 2.6e-123 446.0 301 73.4
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 7.5e-123 444.5 356 68.5
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.7e-122 443.4 305 75.1
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 1.7e-122 443.4 357 66.1
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 4.8e-122 441.8 300 76.0
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 4.8e-122 441.8 305 74.1
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 6.3e-122 441.4 306 72.9
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 1.1e-121 440.7 352 69.6
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 2.4e-121 439.5 306 72.5
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 2.4e-121 439.5 303 73.6
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 2.4e-121 439.5 306 73.5
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 2.4e-121 439.5 308 72.1
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 2.4e-121 439.5 360 67.8
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 5.4e-121 438.3 303 73.3
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 5.4e-121 438.3 302 70.5
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 5.4e-121 438.3 307 72.0
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 1.6e-120 436.8 302 71.5
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 3.5e-120 435.6 302 71.2
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 3.5e-120 435.6 303 72.6
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 4.5e-120 435.3 302 70.2
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 1.0e-119 434.1 310 70.6
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 1.7e-119 433.3 306 71.6
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 2.2e-119 433.0 304 72.0
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 6.5e-119 431.4 314 70.4
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.5e-118 430.3 349 66.5
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 1.5e-118 430.3 395 60.0
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 7.2e-118 427.9 303 72.3
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 1.2e-117 427.2 298 73.5
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 1.2e-117 427.2 304 71.4
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 3.6e-117 425.6 305 71.5
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 8.0e-117 424.5 300 71.0
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 1.0e-116 424.1 302 70.5
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 1.4e-116 423.7 302 70.9
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 1.4e-116 423.7 305 71.1
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 1.4e-116 423.7 305 71.1
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 1.8e-116 423.3 296 71.3
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 3.0e-116 422.5 302 70.5
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 5.2e-116 421.8 303 71.6
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 1.2e-115 420.6 357 64.4
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 3.4e-115 419.1 300 71.0
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 1.7e-114 416.8 300 70.7
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 2.2e-114 416.4 302 69.9
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 3.7e-114 415.6 302 69.2
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 4.9e-114 415.2 306 69.3
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 4.9e-114 415.2 302 69.5
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 6.3e-114 414.8 285 71.9
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 3.1e-113 412.5 301 68.4
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 5.4e-113 411.8 307 70.7
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 1.0e-111 407.5 302 67.9
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 1.0e-111 407.5 288 72.2
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 5.0e-111 405.2 355 64.2
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 1.5e-110 403.7 304 68.8
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 9.5e-110 401.0 300 67.3
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.5e-107 393.7 286 71.0
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 2.0e-107 393.3 243 78.2
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 2.0e-107 393.3 280 68.9
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 1.8e-105 386.7 301 66.4
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 1.7e-103 380.2 293 66.2
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 5.6e-102 375.2 261 73.9
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 1.6e-101 373.6 358 59.8
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 8.3e-98 361.3 305 61.6
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 1.4e-97 360.5 290 68.3
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 4.6e-96 355.5 262 67.2
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 7.5e-91 338.2 237 72.2
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 9.8e-91 337.8 243 68.7
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 1.2e-88 330.9 256 65.2
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 6.0e-88 328.6 302 55.6
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 1.2e-83 314.3 300 56.3
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 7.6e-83 311.6 307 51.1
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 9.9e-83 311.2 307 54.4
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 1.9e-78 297.0 301 53.8
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 8.9e-76 288.1 306 54.2
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 1.4e-73 280.8 305 55.7
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 1.8e-68 263.8 275 52.0
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 2.9e-66 256.5 322 44.7
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 1.5e-62 244.2 202 62.9
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 7.4e-62 241.9 237 56.5
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.8e-60 237.3 237 55.7
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 4.9e-58 229.2 213 66.2
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 1.8e-55 220.7 178 66.9
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 1.3e-50 204.5 170 74.7
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 2.1e-48 197.2 184 62.0
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 7.9e-48 195.3 145 71.0
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 1.8e-47 194.1 368 37.5
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 7.4e-46 188.7 181 59.1
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 8.2e-45 185.3 344 35.2
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 2.1e-40 170.6 191 52.9
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 2.4e-28 130.6 82 79.3
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 1.0e-18 98.6 64 71.9
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 1.4e-12 78.2 36 97.2
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 4.1e-12 76.6 75 56.0
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 2.9e-10 70.5 83 43.4
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 1.1e-09 68.6 100 42.0
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 5.5e-09 66.2 45 77.8
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 2.1e-08 64.3 45 64.4
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 1.2e-06 58.5 47 63.8
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 5.7e-06 56.2 39 76.9


User provided reference genes

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