Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HV2WN6 Arachis hypogaea HOM05D003133 ORTHO05D006343 1.0e-87 326.6 159 100.0
Ca_24552_v3 Cicer arietinum L. HOM05D003133 ORTHO05D003642 3.8e-21 105.5 150 46.0
Medtr5g010250 Medicago truncatula HOM05D003133 ORTHO05D003642 6.4e-21 104.8 150 45.3
LjContig00312_ERROPOS870357g0003358 Lotus japonicus HOM05D003133 ORTHO05D003642 1.1e-20 104.0 150 45.3
Glyma.01G219900 Glycine max HOM05D003133 ORTHO05D003642 5.4e-20 101.7 150 44.0
Phvul.002G157600 Phaseolus vulgaris HOM05D003133 ORTHO05D003642 2.7e-19 99.4 149 43.6
VMungo1215G2488 Vigna mungo HOM05D003133 ORTHO05D003642 3.0e-18 95.9 150 42.0
Aqoxy7G00341 Aquilegia oxysepala HOM05D003133 ORTHO05D003642 7.3e-17 91.3 150 40.7
Medtr5g010230 Medicago truncatula HOM05D003133 ORTHO05D003642 9.6e-17 90.9 143 43.4
TPR.G6641 Trifolium pratense HOM05D003133 ORTHO05D003642 9.6e-17 90.9 111 50.5
arahy.Tifrunner.gnm1.ann1.Y73929 Arachis hypogaea HOM05D003133 ORTHO05D003642 1.8e-15 86.7 89 55.1
Prupe.5G099600 Prunus persica HOM05D003133 ORTHO05D003642 1.8e-15 86.7 148 38.5
Gohir.A09G192401 Gossypium hirsutum HOM05D003133 ORTHO05D003642 9.0e-15 84.3 150 38.0
Gohir.D09G186600 Gossypium hirsutum HOM05D003133 ORTHO05D003642 9.0e-15 84.3 150 38.0
Duzib084G0978 Durio zibethinus HOM05D003133 ORTHO05D003642 1.2e-14 84.0 150 38.7
Gorai.006G209400 Gossypium raimondii HOM05D003133 ORTHO05D003642 1.2e-14 84.0 151 37.7
AL5G13020 Arabidopsis lyrata HOM05D003133 ORTHO05D003642 2.0e-14 83.2 143 40.6
Cfa012179 Carpinus fangiana HOM05D003133 ORTHO05D003642 2.0e-14 83.2 150 37.3
Cfa012180 Carpinus fangiana HOM05D003133 ORTHO05D003642 7.6e-14 81.3 150 36.7
BcaC09g51026 Brassica carinata HOM05D003133 ORTHO05D003642 9.9e-14 80.9 150 38.7
C01p17720 Brassica napus HOM05D003133 ORTHO05D003642 9.9e-14 80.9 150 38.7
BolC1t01707H Brassica oleracea HOM05D003133 ORTHO05D003642 9.9e-14 80.9 150 38.7
Potri.001G104500 Populus trichocarpa HOM05D003133 ORTHO05D003642 9.9e-14 80.9 150 38.0
Cfa012177 Carpinus fangiana HOM05D003133 ORTHO05D003642 1.3e-13 80.5 150 38.0
A03p54030 Brassica napus HOM05D003133 ORTHO05D003642 1.7e-13 80.1 150 38.0
Glyma.05G207600 Glycine max HOM05D003133 ORTHO05D003642 1.7e-13 80.1 150 38.0
Glyma.08G014300 Glycine max HOM05D003133 ORTHO05D003642 1.7e-13 80.1 150 38.0
Lalb_Chr09g0333371 Lupinus albus HOM05D003133 ORTHO05D003642 1.7e-13 80.1 150 38.0
BcaNung00995 Brassica carinata HOM05D003133 ORTHO05D003642 2.2e-13 79.7 150 38.0
Haze_08845 Corylus avellana HOM05D003133 ORTHO05D003642 2.2e-13 79.7 150 38.0
Lalb_Chr05g0224791 Lupinus albus HOM05D003133 ORTHO05D003642 2.2e-13 79.7 150 38.0
Phvul.002G289200 Phaseolus vulgaris HOM05D003133 ORTHO05D003642 2.2e-13 79.7 150 38.0
HanXRQChr06g0165551 Helianthus annuus HOM05D003133 ORTHO05D003642 3.8e-13 79.0 150 36.7
QL12p033200 Quercus lobata HOM05D003133 ORTHO05D003642 3.8e-13 79.0 150 37.3
Thecc.03G278200 Theobroma cacao HOM05D003133 ORTHO05D003642 3.8e-13 79.0 150 38.0
BcaNung01474 Brassica carinata HOM05D003133 ORTHO05D003642 4.9e-13 78.6 150 37.3
BcaNung03247 Brassica carinata HOM05D003133 ORTHO05D003642 4.9e-13 78.6 150 37.3
C07p52450 Brassica napus HOM05D003133 ORTHO05D003642 4.9e-13 78.6 150 37.3
BolC7t45742H Brassica oleracea HOM05D003133 ORTHO05D003642 4.9e-13 78.6 150 37.3
BraA03t14471Z Brassica rapa HOM05D003133 ORTHO05D003642 4.9e-13 78.6 150 37.3
Carub.0007s1815 Capsella rubella HOM05D003133 ORTHO05D003642 4.9e-13 78.6 150 37.3
CARHR230180 Cardamine hirsuta HOM05D003133 ORTHO05D003642 4.9e-13 78.6 150 37.3
Thhalv10024916m.g Eutrema salsugineum HOM05D003133 ORTHO05D003642 4.9e-13 78.6 150 37.3
QL07p017350 Quercus lobata HOM05D003133 ORTHO05D003642 4.9e-13 78.6 150 37.3
Sp7g21160 Schrenkiella parvula HOM05D003133 ORTHO05D003642 4.9e-13 78.6 150 37.3
Hund11475 Selenicereus undatus HOM05D003133 ORTHO05D003642 4.9e-13 78.6 154 38.3
CiPaw.12G093500 Carya illinoinensis HOM05D003133 ORTHO05D003642 6.4e-13 78.2 150 37.3
Sabra01G0079200 Salix brachista HOM05D003133 ORTHO05D003642 6.4e-13 78.2 150 37.3
TAR629G0119 Trochodendron aralioides HOM05D003133 ORTHO05D003642 6.4e-13 78.2 150 36.7
Manes.02G022200 Manihot esculenta HOM05D003133 ORTHO05D003642 8.4e-13 77.8 150 37.3
Nn6g33441 Nelumbo nucifera HOM05D003133 ORTHO05D003642 8.4e-13 77.8 150 37.3
Nn6g33461 Nelumbo nucifera HOM05D003133 ORTHO05D003642 8.4e-13 77.8 150 37.3
AL7G30380 Arabidopsis lyrata HOM05D003133 ORTHO05D003642 1.1e-12 77.4 150 36.7
AT4G23100 Arabidopsis thaliana HOM05D003133 ORTHO05D003642 1.1e-12 77.4 150 36.7
Nn1g01499 Nelumbo nucifera HOM05D003133 ORTHO05D003642 1.1e-12 77.4 150 37.3
VMungo0251G3225 Vigna mungo HOM05D003133 ORTHO05D003642 1.1e-12 77.4 150 36.7
GSVIVG01019757001 Vitis vinifera HOM05D003133 ORTHO05D003642 1.1e-12 77.4 150 36.7
ATR0810G035 Amborella trichopoda HOM05D003133 ORTHO05D003642 1.4e-12 77.0 150 36.7
A01p14400 Brassica napus HOM05D003133 ORTHO05D003642 1.4e-12 77.0 150 37.3
BraA01t01385Z Brassica rapa HOM05D003133 ORTHO05D003642 1.4e-12 77.0 150 37.3
COL.COLO4_34458 Corchorus olitorius HOM05D003133 ORTHO05D003642 1.4e-12 77.0 150 37.3
Prupe.5G099700 Prunus persica HOM05D003133 ORTHO05D003642 1.4e-12 77.0 150 36.0
RcHm_v2.0_Chr7g0197771 Rosa chinensis HOM05D003133 ORTHO05D003642 1.4e-12 77.0 150 36.0
Carub.0007s2982 Capsella rubella HOM05D003133 ORTHO05D003642 1.9e-12 76.6 149 38.3
FvH4_5g02350 Fragaria vesca HOM05D003133 ORTHO05D003642 1.9e-12 76.6 150 36.0
FAN04G0830 Fragaria x ananassa HOM05D003133 ORTHO05D003642 1.9e-12 76.6 150 36.0
FAN08G3005 Fragaria x ananassa HOM05D003133 ORTHO05D003642 1.9e-12 76.6 150 36.0
FAN13G1971 Fragaria x ananassa HOM05D003133 ORTHO05D003642 1.9e-12 76.6 150 36.0
FAN18G2670 Fragaria x ananassa HOM05D003133 ORTHO05D003642 1.9e-12 76.6 150 36.0
PSO063G0727 Papaver somniferum HOM05D003133 ORTHO05D003642 1.9e-12 76.6 150 36.0
Peaxi162Scf00119g00083 Petunia axillaris HOM05D003133 ORTHO05D003642 1.9e-12 76.6 150 35.3
Aa31LG6G5160 Aethionema arabicum HOM05D003133 ORTHO05D003642 2.4e-12 76.3 149 36.9
arahy.Tifrunner.gnm1.ann1.W25JQA Arachis hypogaea HOM05D003133 ORTHO05D003642 2.4e-12 76.3 150 36.7
CBR_g17908 Chara braunii HOM05D003133 ORTHO05D003642 2.4e-12 76.3 182 33.0
Eucgr.D01848 Eucalyptus grandis HOM05D003133 ORTHO05D003642 2.4e-12 76.3 150 36.7
HanXRQChr17g0533681 Helianthus annuus HOM05D003133 ORTHO05D003642 2.4e-12 76.3 150 36.0
Hma1.2p1_0792F.1_g218580 Hydrangea macrophylla HOM05D003133 ORTHO05D003642 2.4e-12 76.3 150 36.0
Hma1.2p1_2966F.1_g330980 Hydrangea macrophylla HOM05D003133 ORTHO05D003642 2.4e-12 76.3 150 36.0
Lj8A228T23 Lonicera japonica HOM05D003133 ORTHO05D003642 2.4e-12 76.3 150 36.0
Lj8A232T62 Lonicera japonica HOM05D003133 ORTHO05D003642 2.4e-12 76.3 150 36.0
Psat7g033480 Pisum sativum HOM05D003133 ORTHO05D003642 2.4e-12 76.3 150 36.7
PGR031G1439 Punica granatum HOM05D003133 ORTHO05D003642 2.4e-12 76.3 150 36.0
THA.LOC104806388 Tarenaya hassleriana HOM05D003133 ORTHO05D003642 2.4e-12 76.3 150 36.0
AL7G30390 Arabidopsis lyrata HOM05D003133 ORTHO05D003642 3.2e-12 75.9 148 37.2
Ca_17536_v3 Cicer arietinum L. HOM05D003133 ORTHO05D003642 3.2e-12 75.9 150 36.7
Ciclev10019696m.g Citrus clementina HOM05D003133 ORTHO05D003642 3.2e-12 75.9 150 36.0
PSO017G2538 Papaver somniferum HOM05D003133 ORTHO05D003642 3.2e-12 75.9 150 36.0
Sopen08g029330 Solanum pennellii HOM05D003133 ORTHO05D003642 3.2e-12 75.9 150 35.3
MSTRG.13837 Avicennia marina HOM05D003133 ORTHO05D003642 4.2e-12 75.5 150 35.3
Medtr8g098350 Medicago truncatula HOM05D003133 ORTHO05D003642 4.2e-12 75.5 150 36.0
Actinidia14558 Actinidia chinensis HOM05D003133 ORTHO05D003642 5.4e-12 75.1 150 36.0
arahy.Tifrunner.gnm1.ann1.WBB0SP Arachis hypogaea HOM05D003133 ORTHO05D003642 5.4e-12 75.1 150 36.0
BcaB03g11757 Brassica carinata HOM05D003133 ORTHO05D003642 5.4e-12 75.1 153 35.9
Potri.003G126900 Populus trichocarpa HOM05D003133 ORTHO05D003642 5.4e-12 75.1 150 36.7
TPR.G12862 Trifolium pratense HOM05D003133 ORTHO05D003642 5.4e-12 75.1 150 36.0
C03p84590 Brassica napus HOM05D003133 ORTHO05D003642 7.1e-12 74.7 150 36.7
BolC3t20748H Brassica oleracea HOM05D003133 ORTHO05D003642 7.1e-12 74.7 150 36.7
CANSAT21G0409 Cannabis sativa HOM05D003133 ORTHO05D003642 7.1e-12 74.7 150 36.7
Lalb_Chr09g0321001 Lupinus albus HOM05D003133 ORTHO05D003642 7.1e-12 74.7 88 48.9
MD06G1082500 Malus domestica HOM05D003133 ORTHO05D003642 7.1e-12 74.7 150 34.7
Solyc08g081010.3 Solanum lycopersicum HOM05D003133 ORTHO05D003642 7.1e-12 74.7 150 34.7
PGSC0003DMG400012210 Solanum tuberosum HOM05D003133 ORTHO05D003642 7.1e-12 74.7 150 34.7
BcaNung03246 Brassica carinata HOM05D003133 ORTHO05D003642 9.3e-12 74.3 150 36.0
CSS0049388 Camellia sinensis var. sinensis HOM05D003133 ORTHO05D003642 9.3e-12 74.3 150 34.7
ClCG01G002740 Citrullus lanatus HOM05D003133 ORTHO05D003642 9.3e-12 74.3 150 34.7
Lj4g0013021 Lotus japonicus HOM05D003133 ORTHO05D003642 9.3e-12 74.3 150 36.0
A03p54020 Brassica napus HOM05D003133 ORTHO05D003642 1.2e-11 73.9 150 36.0
BraA03t14470Z Brassica rapa HOM05D003133 ORTHO05D003642 1.2e-11 73.9 150 36.0
Migut.A00769 Erythranthe guttata HOM05D003133 ORTHO05D003642 1.2e-11 73.9 150 34.7
Lj2A192G38 Lonicera japonica HOM05D003133 ORTHO05D003642 1.2e-11 73.9 150 35.3
Sabra03G0090000 Salix brachista HOM05D003133 ORTHO05D003642 1.2e-11 73.9 150 36.7
SalBow7G4504 Salvia bowleyana HOM05D003133 ORTHO05D003642 1.2e-11 73.9 150 35.3
AagrBONN_evm.TU.Sc2ySwM_228.1870 Anthoceros agrestis HOM05D003133 ORTHO05D003642 1.6e-11 73.6 150 37.3
Cc08_g14690 Coffea canephora HOM05D003133 ORTHO05D003642 1.6e-11 73.6 150 35.3
Nitab4.5_0003441g0130 Nicotiana tabacum HOM05D003133 ORTHO05D003642 1.6e-11 73.6 150 34.7
Nitab4.5_0010612g0020 Nicotiana tabacum HOM05D003133 ORTHO05D003642 1.6e-11 73.6 150 34.7
Sc22g0005610 Simmondsia chinensis HOM05D003133 ORTHO05D003642 1.6e-11 73.6 150 36.0
ECA246G1277 Erigeron canadensis HOM05D003133 ORTHO05D003642 2.1e-11 73.2 150 34.0
Sed0025899 Sechium edule HOM05D003133 ORTHO05D003642 2.1e-11 73.2 150 34.7
THA.LOC104814473 Tarenaya hassleriana HOM05D003133 ORTHO05D003642 2.1e-11 73.2 150 36.0
DCAR_004635 Daucus carota HOM05D003133 ORTHO05D003642 2.7e-11 72.8 150 34.7
Lsat_1_v5_gn_1_34361 Lactuca sativa HOM05D003133 ORTHO05D003642 2.7e-11 72.8 150 34.0
BolC7t45737H Brassica oleracea HOM05D003133 ORTHO05D003642 4.6e-11 72.0 150 35.3
CiPaw.11G135600 Carya illinoinensis HOM05D003133 ORTHO05D003642 4.6e-11 72.0 140 36.4
CsaV3_5G002830 Cucumis sativus L. HOM05D003133 ORTHO05D003642 4.6e-11 72.0 150 33.3
MD14G1104000 Malus domestica HOM05D003133 ORTHO05D003642 4.6e-11 72.0 150 34.0
BcaC01g00811 Brassica carinata HOM05D003133 ORTHO05D003642 6.0e-11 71.6 150 36.0
CDE09G0774 Ceratophyllum demersum HOM05D003133 ORTHO05D003642 6.0e-11 71.6 96 43.8
SMO353G0160 Selaginella moellendorffii HOM05D003133 ORTHO05D003642 6.0e-11 71.6 126 35.7
MELO3C005674.2 Cucumis melo HOM05D003133 ORTHO05D003642 7.9e-11 71.2 150 33.3
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.0e-10 70.9 47 76.6
EL10Ac5g13059 Beta vulgaris HOM05D003133 ORTHO05D003642 1.0e-10 70.9 150 34.7
unitig_88.g27613 Utricularia gibba HOM05D003133 ORTHO05D003642 1.0e-10 70.9 150 32.7
C07p52420 Brassica napus HOM05D003133 ORTHO05D003642 1.3e-10 70.5 149 35.6
CAN.G774.27 Capsicum annuum HOM05D003133 ORTHO05D003642 1.3e-10 70.5 148 34.5
TWI15G0789 Tripterygium wilfordii HOM05D003133 ORTHO05D003642 1.3e-10 70.5 150 34.7
AUR62017210 Chenopodium quinoa HOM05D003133 ORTHO05D003642 1.7e-10 70.1 150 33.3
MD07G1036400 Malus domestica HOM05D003133 ORTHO05D003642 1.7e-10 70.1 141 34.8
Oeu011047.1 Olea europaea HOM05D003133 ORTHO05D003642 1.7e-10 70.1 150 33.3
HPP92_015162 Vanilla planifolia HOM05D003133 ORTHO05D003642 1.7e-10 70.1 150 35.3
Pp3c2_1270 Physcomitrium patens HOM05D003133 ORTHO05D003642 2.3e-10 69.7 149 34.2
arahy.Tifrunner.gnm1.ann1.61QVL1 Arachis hypogaea HOM05D003133 ORTHO05D021498 3.0e-10 69.3 57 64.9
Cpa.g.sc74.44 Carica papaya HOM05D003133 ORTHO05D003642 3.0e-10 69.3 152 34.2
SalBow8G3631 Salvia bowleyana HOM05D003133 ORTHO05D003642 3.0e-10 69.3 176 31.8
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 3.9e-10 68.9 47 74.5
Oeu009160.2 Olea europaea HOM05D003133 ORTHO05D003642 3.9e-10 68.9 150 34.0
Pp3c1_34800 Physcomitrium patens HOM05D003133 ORTHO05D003642 3.9e-10 68.9 125 39.2
Mapoly0043s0124 Marchantia polymorpha HOM05D003133 ORTHO05D003642 5.1e-10 68.6 149 34.9
Ah.12g056970 Amaranthus hybridus HOM05D003133 ORTHO05D003642 6.6e-10 68.2 150 33.3
Zm00001eb354890 Zea mays HOM05D003133 ORTHO05D003642 8.7e-10 67.8 150 34.0
SGA_v2.0_scaffold173G39193 Striga asiatica HOM05D003133 ORTHO05D003642 1.1e-09 67.4 145 33.8
Rhsim02G0230100 Rhododendron simsii HOM05D003133 ORTHO05D003642 1.5e-09 67.0 125 36.8
SHI07126 Sapria himalayana HOM05D003133 ORTHO05D003642 1.9e-09 66.6 165 34.5
Hund14791 Selenicereus undatus HOM05D003133 ORTHO05D003642 1.9e-09 66.6 150 32.7
Zm00001eb264980 Zea mays HOM05D003133 ORTHO05D003642 1.9e-09 66.6 150 34.0
AUR62003405 Chenopodium quinoa HOM05D003133 ORTHO05D003642 2.5e-09 66.2 161 31.7
BcaNung01476 Brassica carinata HOM05D003133 ORTHO05D003642 4.3e-09 65.5 148 34.5
MBI18_g34593_MAGBIO Magnolia biondii HOM05D003133 ORTHO05D003642 4.3e-09 65.5 92 45.7
CSS0043939 Camellia sinensis var. sinensis HOM05D003133 ORTHO05D003642 7.3e-09 64.7 92 43.5
Os07g0462000 Oryza sativa ssp. japonica HOM05D003133 ORTHO05D003642 7.3e-09 64.7 150 32.0
Pp3c22_12540 Physcomitrium patens HOM05D003133 ORTHO05D003642 7.3e-09 64.7 168 33.9
SMO143G0252 Selaginella moellendorffii HOM05D003133 ORTHO05D003642 7.3e-09 64.7 126 37.3
vmacro11331 Vaccinium macrocarpon HOM05D003133 ORTHO05D003642 7.3e-09 64.7 93 44.1
Os05g0129000 Oryza sativa ssp. japonica HOM05D003133 ORTHO05D003642 2.1e-08 63.2 150 31.3
Atru.chr9.2198 Acer truncatum HOM05D003133 ORTHO05D003642 2.8e-08 62.8 135 34.8
Manes.01G061500 Manihot esculenta HOM05D003133 ORTHO05D003642 4.8e-08 62.0 150 32.7
CDE11G0240 Ceratophyllum demersum HOM05D003133 ORTHO05D003642 3.1e-07 59.3 125 35.2
MCO14G076 Micromonas commoda HOM05D003133 ORTHO05D003642 4.0e-07 58.9 125 32.8
arahy.Tifrunner.gnm1.ann1.RW3FWP Arachis hypogaea HOM05D003133 ORTHO05D001383 1.5e-06 57.0 34 85.3
Cre02.g077100 Chlamydomonas reinhardtii HOM05D003133 ORTHO05D003642 5.8e-06 55.1 150 29.3


User provided reference genes

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