Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 2.7e-300 1034.6 533 100.0
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.3e-299 1032.3 533 98.5
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 2.2e-254 882.1 537 84.0
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 1.2e-252 876.3 539 83.3
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 2.1e-252 875.5 540 82.6
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 4.3e-250 867.8 539 82.7
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 1.4e-248 862.8 538 82.3
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 2.3e-243 845.5 529 81.3
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 2.6e-239 832.0 536 79.7
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 8.7e-235 817.0 537 78.8
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 2.0e-231 805.8 529 78.8
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 3.3e-226 788.5 537 76.4
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 8.4e-222 773.9 543 74.0
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 1.4e-216 756.5 541 71.3
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 7.6e-215 750.7 540 70.4
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 5.0e-214 748.0 703 59.7
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 4.2e-213 745.0 540 70.9
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 4.2e-213 745.0 542 70.5
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 4.6e-212 741.5 544 71.7
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 4.6e-212 741.5 544 71.7
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 1.1e-210 736.9 556 68.9
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 4.8e-209 731.5 557 68.2
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 4.8e-209 731.5 541 69.1
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 3.4e-207 725.3 545 70.3
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 1.0e-206 723.8 543 68.9
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.3e-206 723.4 544 68.4
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.3e-206 723.4 544 68.4
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.2e-206 722.6 544 68.8
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 1.1e-205 720.3 544 68.4
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 2.5e-205 719.2 537 69.1
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 4.2e-205 718.4 544 68.8
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 7.2e-205 717.6 546 67.0
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 1.0e-203 713.8 528 67.8
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.8e-203 713.0 541 68.9
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 2.3e-203 712.6 539 69.8
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 2.6e-202 709.1 542 66.4
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 7.4e-202 707.6 534 67.8
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 7.4e-202 707.6 545 66.8
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 2.8e-201 705.7 542 68.1
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 2.8e-201 705.7 542 68.1
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 4.8e-201 704.9 545 68.3
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 1.8e-200 703.0 574 65.3
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 2.0e-199 699.5 540 67.0
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 2.6e-199 699.1 544 66.5
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 1.0e-198 697.2 540 67.0
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 1.7e-198 696.4 535 66.5
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 9.4e-197 690.6 539 65.9
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 7.9e-196 687.6 541 66.5
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 2.0e-194 682.9 543 65.7
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.3e-193 680.2 594 63.5
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 7.0e-192 674.5 542 63.8
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 1.6e-191 673.3 547 64.7
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 2.0e-191 672.9 543 63.5
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 2.2e-190 669.5 535 64.9
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 3.8e-190 668.7 535 64.9
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 6.5e-190 667.9 540 64.1
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 1.5e-189 666.8 539 63.5
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 4.2e-189 665.2 521 65.5
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 3.6e-188 662.1 534 64.2
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 1.4e-187 660.2 549 62.8
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 2.0e-186 656.4 534 62.7
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 1.7e-185 653.3 532 63.3
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 2.2e-185 652.9 519 65.7
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 2.2e-185 652.9 520 65.4
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 6.3e-185 651.4 532 63.0
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 1.8e-184 649.8 544 64.5
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.7e-182 643.3 510 66.3
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 4.2e-181 638.6 541 60.8
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 7.2e-181 637.9 552 60.7
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 1.2e-180 637.1 549 62.5
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 6.1e-180 634.8 549 60.1
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 1.8e-179 633.3 548 63.0
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 2.3e-179 632.9 546 62.3
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 5.7e-178 628.2 542 62.0
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 9.8e-178 627.5 542 61.8
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 9.8e-178 627.5 541 61.2
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 1.7e-177 626.7 545 60.4
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 1.7e-177 626.7 541 61.9
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 3.7e-177 625.5 548 62.8
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.4e-176 622.9 569 59.4
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 2.0e-175 619.8 544 61.2
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 2.0e-175 619.8 544 61.2
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 1.0e-174 617.5 547 60.9
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 5.0e-174 615.1 434 72.8
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 1.6e-172 610.1 545 58.7
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.6e-172 610.1 502 64.7
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 1.2e-170 604.0 544 59.6
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 1.2e-170 604.0 544 59.6
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 1.5e-170 603.6 547 59.8
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 1.5e-170 603.6 547 59.8
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 8.3e-169 597.8 541 57.7
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 4.1e-168 595.5 546 59.7
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 3.5e-159 565.8 867 42.2
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 9.5e-157 557.8 542 54.2
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 7.5e-154 548.1 535 53.8
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 6.4e-153 545.0 535 54.0
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 5.0e-150 535.4 368 71.7
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 3.6e-148 529.3 549 54.5
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 8.3e-145 518.1 540 51.7
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 5.4e-144 515.4 575 49.7
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 8.6e-142 508.1 310 78.7
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 1.6e-140 503.8 560 47.5
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 8.4e-137 491.5 370 67.0
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.4e-122 443.0 507 49.7
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 3.8e-121 439.5 277 75.5
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 3.0e-118 429.9 519 47.6
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 3.7e-116 422.9 445 54.4
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 1.3e-108 397.9 286 64.3
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 1.6e-108 397.5 563 42.6
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.5e-101 374.4 410 53.9
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 1.8e-99 367.5 435 52.2
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 4.1e-99 366.3 404 54.0
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 5.1e-94 349.4 574 39.7
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 3.3e-93 346.7 372 55.9
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 7.4e-93 345.5 583 38.8
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 4.7e-87 326.2 318 55.3
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.8e-83 314.3 218 71.1
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 2.9e-81 307.0 399 42.1
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 4.1e-67 260.0 266 59.8
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 9.1e-67 258.8 252 54.8
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 2.0e-66 257.7 356 47.5
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 9.4e-64 248.8 260 53.5
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 1.6e-63 248.1 257 58.8
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 1.5e-61 241.5 257 58.0
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 4.1e-59 233.4 157 73.9
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 3.3e-56 223.8 186 60.8
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 1.2e-55 221.9 131 80.2
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 4.4e-53 213.4 127 78.7
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 2.3e-49 201.1 114 84.2
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 7.3e-48 196.1 473 32.8
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.4e-45 187.2 228 47.8
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 2.3e-41 174.5 237 47.7
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 2.1e-39 167.9 113 68.1
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 2.8e-39 167.5 175 51.4
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 8.9e-38 162.5 102 74.5
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 2.6e-37 161.0 102 73.5
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.2e-34 152.1 89 77.5
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.2e-34 152.1 89 77.5
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.2e-34 152.1 89 77.5
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.2e-34 152.1 103 72.8
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.0e-33 147.5 85 77.6
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 1.1e-32 145.6 163 51.5
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 4.3e-32 143.7 204 46.6
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 5.6e-32 143.3 107 62.6
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 4.4e-29 133.7 79 74.7
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.3e-28 132.1 79 75.9
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 1.6e-26 125.2 106 58.5
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 4.7e-23 113.6 64 84.4
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 4.0e-22 110.5 183 45.4
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 4.4e-21 107.1 88 65.9
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 1.3e-20 105.5 82 72.0
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 7.8e-18 96.3 56 73.2
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 8.7e-17 92.8 48 89.6
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 7.3e-16 89.7 56 66.1
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 1.6e-15 88.6 55 65.5
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 1.6e-15 88.6 56 64.3
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 2.1e-15 88.2 112 42.0
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 5.3e-14 83.6 55 67.3
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 6.9e-14 83.2 59 67.8
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 6.0e-10 70.1 201 34.8
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 1.0e-09 69.3 97 49.5
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-09 68.9 238 34.5
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 2.3e-09 68.2 89 43.8
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.5e-08 64.7 107 41.1
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 2.1e-07 61.6 36 72.2
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 2.1e-07 61.6 30 83.3
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 6.9e-06 56.6 30 73.3


User provided reference genes

Program Settings