Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 7.8e-71 270.4 140 100.0
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 3.3e-69 265.0 140 98.6
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 1.1e-64 250.0 140 90.7
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 1.9e-64 249.2 140 90.7
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 3.2e-64 248.4 140 90.0
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 2.3e-62 242.3 140 90.7
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 9.5e-61 236.9 140 86.4
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 1.2e-60 236.5 140 87.9
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.3e-59 232.3 141 85.1
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 8.9e-59 230.3 140 85.0
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 8.9e-59 230.3 140 85.0
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 8.9e-59 230.3 140 82.9
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 3.4e-58 228.4 140 82.9
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 4.4e-58 228.0 140 83.6
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 4.4e-58 228.0 140 83.6
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 5.8e-58 227.6 140 82.9
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.5e-58 227.3 141 83.0
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 7.5e-58 227.3 141 83.0
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 9.8e-58 226.9 140 82.1
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 9.8e-58 226.9 141 85.1
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 9.8e-58 226.9 139 84.2
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 2.9e-57 225.3 140 81.4
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.9e-57 225.3 140 81.4
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.9e-57 225.3 140 81.4
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 3.7e-57 224.9 140 80.0
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 4.9e-57 224.6 140 81.4
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 6.4e-57 224.2 140 84.3
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 6.4e-57 224.2 140 80.7
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 8.3e-57 223.8 140 84.3
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 1.1e-56 223.4 140 80.7
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.9e-56 222.6 141 80.9
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 1.9e-56 222.6 140 85.0
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.9e-56 222.6 140 79.3
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.2e-55 219.9 140 80.7
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 1.2e-55 219.9 141 83.0
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.1e-55 219.2 140 80.0
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.7e-55 218.8 140 79.3
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.5e-55 218.4 140 79.3
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 3.5e-55 218.4 140 80.0
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 3.5e-55 218.4 140 80.0
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 4.6e-55 218.0 136 81.6
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 6.0e-55 217.6 141 79.4
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 6.0e-55 217.6 141 79.4
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 6.0e-55 217.6 140 82.1
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 6.0e-55 217.6 140 77.9
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 1.0e-54 216.9 142 79.6
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.0e-54 216.9 140 78.6
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.0e-54 216.9 138 79.0
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.7e-54 216.1 140 79.3
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 2.3e-54 215.7 141 81.6
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 2.3e-54 215.7 142 80.3
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 2.3e-54 215.7 140 79.3
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 3.9e-54 214.9 141 78.0
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 3.9e-54 214.9 141 78.0
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 3.9e-54 214.9 141 78.0
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 3.9e-54 214.9 140 80.0
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 5.1e-54 214.5 134 82.8
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 6.6e-54 214.2 142 78.2
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 6.6e-54 214.2 142 78.2
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 6.6e-54 214.2 142 78.2
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 6.6e-54 214.2 141 78.0
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 6.6e-54 214.2 140 78.6
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 8.6e-54 213.8 141 77.3
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 8.6e-54 213.8 142 78.2
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 8.6e-54 213.8 140 76.4
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 1.1e-53 213.4 141 79.4
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.5e-53 213.0 141 78.0
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 1.9e-53 212.6 143 76.2
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 4.3e-53 211.5 139 78.4
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 5.6e-53 211.1 137 77.4
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 1.2e-52 209.9 142 76.8
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 1.2e-52 209.9 142 76.8
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.2e-52 209.9 142 76.8
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.6e-52 209.5 141 80.9
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 2.1e-52 209.1 142 76.8
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 2.1e-52 209.1 142 76.8
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 75.2
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 2.1e-52 209.1 142 76.1
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 77.3
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.1e-52 209.1 140 76.4
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 2.8e-52 208.8 141 75.9
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 3.6e-52 208.4 141 75.9
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 4.7e-52 208.0 138 78.3
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 6.2e-52 207.6 141 76.6
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 6.2e-52 207.6 141 76.6
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 6.2e-52 207.6 141 76.6
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 6.2e-52 207.6 141 76.6
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 6.2e-52 207.6 141 76.6
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 6.2e-52 207.6 141 75.2
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 8.1e-52 207.2 140 75.7
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 8.1e-52 207.2 144 77.1
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 8.1e-52 207.2 141 76.6
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 2.3e-51 205.7 140 74.3
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.3e-51 205.7 140 78.6
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 4.0e-51 204.9 141 76.6
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 6.8e-51 204.1 144 75.0
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 6.8e-51 204.1 141 75.9
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.8e-51 204.1 139 80.6
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.2e-50 203.4 141 77.3
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.5e-50 203.0 141 78.7
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 2.0e-50 202.6 142 75.4
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.6e-50 202.2 140 73.6
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.6e-50 202.2 140 73.6
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 3.4e-50 201.8 156 72.4
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 4.4e-50 201.4 139 76.3
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 7.6e-50 200.7 141 75.9
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 7.6e-50 200.7 140 75.0
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 1.3e-49 199.9 141 79.4
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 3.8e-49 198.4 141 73.0
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 3.8e-49 198.4 139 74.1
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 6.4e-49 197.6 141 73.8
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 8.4e-49 197.2 141 77.3
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 1.4e-48 196.4 133 75.2
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.9e-48 196.1 142 74.6
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 4.1e-48 194.9 141 73.0
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 2.1e-47 192.6 142 73.9
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 2.1e-47 192.6 134 76.1
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 3.5e-47 191.8 140 70.7
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 4.6e-47 191.4 142 73.9
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 6.0e-47 191.0 140 73.6
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.0e-46 188.7 140 72.1
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 3.9e-46 188.3 140 70.0
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 3.9e-46 188.3 141 70.9
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 7.3e-45 184.1 140 71.4
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 9.6e-45 183.7 138 68.1
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 1.6e-44 183.0 138 68.8
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 2.8e-44 182.2 135 71.9
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 1.8e-43 179.5 142 68.3
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 2.4e-43 179.1 140 70.0
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 4.0e-43 178.3 138 68.1
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 2.6e-42 175.6 140 67.1
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 2.6e-42 175.6 140 67.1
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 3.4e-42 175.3 109 79.8
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.8e-42 174.5 140 65.7
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 1.7e-41 172.9 140 71.4
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.7e-41 172.9 153 67.3
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 2.2e-41 172.6 138 68.8
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.9e-40 169.5 141 64.5
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 1.3e-38 163.3 91 87.9
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 3.9e-38 161.8 111 73.9
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 3.9e-38 161.8 161 61.5
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 1.1e-37 160.2 138 63.0
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 4.3e-37 158.3 114 73.7
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.3e-36 156.8 140 60.0
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 4.8e-36 154.8 139 59.7
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 6.9e-35 151.0 140 62.9
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 6.9e-35 151.0 147 57.8
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.3e-33 146.7 145 61.4
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.7e-33 146.4 90 84.4
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 7.1e-32 141.0 137 56.9
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 1.3e-30 136.7 140 54.3
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 3.0e-30 135.6 90 81.1
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 4.3e-29 131.7 120 58.3
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.6e-29 131.3 147 55.1
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 7.4e-29 131.0 139 54.0
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.1e-27 127.1 90 76.7
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 4.0e-27 125.2 131 58.8
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 4.0e-27 125.2 140 55.0
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 7.4e-21 104.4 138 42.8
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 9.6e-21 104.0 53 90.6
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 4.8e-20 101.7 67 71.6
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 8.1e-20 100.9 141 46.1
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 2.2e-17 92.8 81 66.7
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 3.8e-17 92.0 134 47.0
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 4.6e-15 85.1 74 64.9
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.2e-10 70.5 136 42.6


User provided reference genes

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