Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 0.0e+00 1440.2 740 100.0
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 0.0e+00 1136.7 621 95.3
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.5e-282 976.1 612 82.7
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 4.6e-279 964.5 612 81.7
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 6.6e-278 960.7 612 80.9
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 3.3e-277 958.4 612 81.2
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 3.1e-275 951.8 613 81.2
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 4.0e-275 951.4 613 81.2
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 2.2e-273 945.7 614 80.6
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 6.6e-270 934.1 612 79.7
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 5.1e-262 907.9 619 75.8
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 3.5e-255 885.2 568 81.0
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 6.6e-254 880.9 614 75.1
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.5e-253 879.8 617 73.6
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-253 879.4 614 73.8
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 4.3e-253 878.2 614 74.6
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 7.3e-253 877.5 613 74.7
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 9.6e-253 877.1 614 74.9
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.6e-252 876.3 613 74.2
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.6e-252 876.3 612 74.3
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 2.8e-252 875.5 617 73.4
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.2e-250 870.2 614 73.5
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 2.6e-250 869.0 614 73.5
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 8.4e-249 864.0 616 72.2
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 6.0e-247 857.8 612 72.4
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.3e-246 855.9 613 73.1
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 2.3e-246 855.9 613 73.1
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 3.9e-246 855.1 614 71.7
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 5.6e-245 851.3 613 73.1
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 2.1e-244 849.4 545 81.1
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 2.8e-244 849.0 614 71.5
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 2.4e-243 845.9 613 71.9
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.5e-242 843.2 611 72.0
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 5.5e-240 834.7 617 70.7
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 7.1e-240 834.3 615 71.4
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 2.7e-239 832.4 613 69.8
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.3e-238 830.1 614 69.2
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 5.1e-238 828.2 614 69.9
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 5.1e-238 828.2 612 69.3
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 5.1e-238 828.2 617 69.9
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 6.7e-238 827.8 616 70.1
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.1e-237 827.0 613 69.3
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 2.5e-237 825.9 623 70.1
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.3e-236 823.5 616 69.3
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.6e-236 823.2 613 69.3
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.8e-235 819.7 616 69.8
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 6.9e-235 817.8 613 68.8
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 1.2e-234 817.0 615 68.3
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.5e-234 816.6 613 69.3
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 3.4e-234 815.5 629 69.5
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.3e-233 813.5 615 68.0
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 1.7e-233 813.1 615 68.1
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.7e-233 813.1 614 69.2
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.9e-232 809.7 614 69.2
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 2.5e-232 809.3 710 61.5
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 6.0e-231 804.7 624 68.9
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 5.1e-230 801.6 616 67.5
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 5.1e-230 801.6 612 68.3
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 4.3e-229 798.5 601 68.1
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 7.4e-229 797.7 613 66.7
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 6.3e-228 794.7 599 68.1
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 8.2e-228 794.3 615 67.8
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.8e-227 793.1 564 72.3
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.8e-227 793.1 608 68.9
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 3.1e-227 792.3 614 65.8
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 4.1e-227 792.0 614 66.4
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 4.1e-227 792.0 614 66.0
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 1.5e-226 790.0 614 66.3
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 2.0e-226 789.6 614 66.0
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 2.0e-226 789.6 614 65.5
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 2.6e-226 789.3 614 66.1
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 3.4e-226 788.9 614 65.6
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 3.4e-226 788.9 614 66.3
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 3.4e-226 788.9 614 66.1
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 4.5e-226 788.5 612 66.0
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 4.5e-226 788.5 746 58.8
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.3e-225 786.9 613 66.4
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.2e-223 780.4 575 73.2
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 6.1e-223 778.1 607 67.4
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 1.8e-222 776.5 612 66.8
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 5.5e-216 755.0 615 65.4
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.3e-214 749.6 567 69.5
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 6.3e-212 741.5 615 62.9
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.1e-211 740.7 615 62.8
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 4.1e-211 738.8 548 70.6
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 1.9e-208 729.9 598 64.7
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 5.3e-195 685.3 501 72.9
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.0e-194 683.3 612 60.3
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.7e-188 663.7 599 59.8
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 5.9e-186 655.2 615 58.5
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.9e-184 650.2 631 55.8
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 1.9e-163 580.5 677 48.7
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.9e-161 572.8 686 51.0
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 9.9e-157 558.1 532 56.0
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-156 557.4 382 73.8
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.1e-154 550.4 480 62.1
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 9.9e-149 531.6 383 71.5
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 2.2e-148 530.4 358 73.7
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 3.8e-140 503.1 504 54.6
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 3.2e-131 473.4 346 72.8
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 3.1e-126 456.8 359 67.4
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-122 443.4 393 61.8
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.5e-120 438.0 257 85.6
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 6.9e-118 429.1 257 84.8
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 2.2e-108 397.5 438 52.3
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 2.2e-103 380.9 323 63.8
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.1e-102 377.1 256 73.0
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.4e-99 368.2 244 76.2
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 2.6e-96 357.5 662 37.6
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.8e-94 351.3 231 75.3
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 6.1e-74 283.1 630 33.8
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 2.0e-72 278.1 173 77.5
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 7.5e-64 249.6 217 65.0
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 5.6e-59 233.4 219 62.1
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.2e-56 225.7 172 67.4
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 6.8e-49 199.9 158 62.7
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 5.8e-48 196.8 111 84.7
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 4.1e-46 190.7 111 83.8
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 3.0e-44 184.5 111 80.2
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 1.9e-43 181.8 110 80.0
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-36 159.1 104 79.8
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 1.7e-36 158.7 104 71.2
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-35 155.2 109 74.3
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 9.6e-35 152.9 99 75.8
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-34 152.1 127 63.0
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.6e-32 143.3 82 79.3
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 3.9e-28 131.0 134 61.9
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 8.7e-28 129.8 125 57.6
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.9e-27 128.6 134 53.7
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 7.3e-27 126.7 368 27.2
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 5.3e-25 120.6 69 85.5
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-24 118.6 71 77.5
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 3.4e-24 117.9 104 54.8
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 3.4e-24 117.9 104 54.8
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-23 115.2 77 75.3
arahy.Tifrunner.gnm1.ann1.QYPE8P Arachis hypogaea HOM05D000744 ORTHO05D000332 1.3e-20 105.9 116 53.4
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 2.5e-19 101.7 55 78.2
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.3e-18 99.4 83 56.6
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-15 89.0 55 76.4
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 8.4e-15 86.7 60 73.3
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.5e-11 75.9 50 76.0
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-11 75.9 40 87.5
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 2.5e-11 75.1 41 90.2
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 2.5e-11 75.1 41 80.5
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 1.3e-10 72.8 193 30.1
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 3.7e-10 71.2 159 30.2
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 8.1e-10 70.1 159 30.2
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 2.4e-09 68.6 165 29.1
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 2.4e-09 68.6 159 29.6
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 3.1e-09 68.2 197 26.9
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 4.0e-09 67.8 159 30.2
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 4.0e-09 67.8 159 30.2
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 5.3e-09 67.4 186 28.0
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 6.9e-09 67.0 159 30.2
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 6.9e-09 67.0 159 30.8
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 6.9e-09 67.0 189 28.6
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 6.9e-09 67.0 159 30.2
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 6.9e-09 67.0 176 28.4
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 9.0e-09 66.6 159 30.2
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 9.0e-09 66.6 159 30.8
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 1.5e-08 65.9 159 29.6
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 2.6e-08 65.1 159 28.9
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 3.4e-08 64.7 181 27.6
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 3.4e-08 64.7 159 28.3
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 3.4e-08 64.7 159 28.3
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 3.4e-08 64.7 41 70.7
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 5.8e-08 63.9 159 28.9
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 5.8e-08 63.9 159 28.9
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 1.0e-07 63.2 159 29.6
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 1.0e-07 63.2 179 29.1
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 1.0e-07 63.2 159 28.3
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 1.0e-07 63.2 159 28.3
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 1.0e-07 63.2 151 27.8
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 1.3e-07 62.8 159 28.9
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 1.3e-07 62.8 159 28.9
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.3e-07 62.8 159 28.9
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 2.9e-07 61.6 151 27.8
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 3.8e-07 61.2 45 66.7
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 6.5e-07 60.5 45 62.2
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 8.4e-07 60.1 134 29.1
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.4e-06 59.3 134 29.1
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 2.5e-06 58.5 159 29.6
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 7.1e-06 57.0 120 33.3


User provided reference genes

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