Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 3659.8 1942 100.0
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 3556.9 1939 97.0
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 2633.6 1978 72.8
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 2607.4 1958 72.5
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 2606.2 1966 72.3
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2600.5 1966 71.4
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2597.8 1989 71.4
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 2594.3 1975 71.5
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2563.9 1986 69.9
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 2552.7 1978 71.0
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 2510.3 2010 68.4
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 2490.7 1964 69.8
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2192.5 1989 61.8
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2189.1 2003 60.5
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2180.6 1882 63.4
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2174.1 1999 60.7
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2173.7 1896 62.6
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2168.3 1916 62.1
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2158.6 1896 62.3
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2156.3 1984 60.4
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2156.3 1973 60.6
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2154.8 1978 60.9
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2147.5 1999 59.4
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2136.3 1983 60.3
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2127.1 2124 56.8
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2125.1 1995 58.9
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2121.7 1971 60.1
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2111.6 1905 61.4
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2102.4 1890 61.1
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2094.3 1964 59.8
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2091.2 1982 59.7
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2084.3 1975 59.6
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2071.6 1896 62.0
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2045.4 1976 57.7
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2041.9 1968 57.8
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2040.0 1955 58.4
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2025.0 1918 60.1
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2021.9 1982 58.4
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 2021.5 1963 58.2
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 2000.7 2017 56.5
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1998.8 1587 66.2
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1998.0 1854 59.0
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1994.9 1978 58.6
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1994.5 1904 58.5
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1992.2 1559 65.5
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1968.7 1556 65.5
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1962.2 1911 57.4
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1941.0 1926 57.1
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1936.8 2007 55.8
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1924.8 2010 54.4
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1902.5 2103 53.9
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1856.6 1594 60.8
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1855.5 1930 54.0
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1851.6 1897 54.9
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1845.9 2035 53.4
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1845.9 1951 54.3
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1838.5 1989 54.5
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1833.2 2000 53.2
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1831.2 1993 53.5
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1830.8 1964 54.0
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1830.5 1912 55.6
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1827.8 1887 54.2
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1823.9 1891 54.4
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1823.1 1883 54.6
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1822.8 1906 54.4
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1816.2 1867 54.7
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1806.6 1488 63.0
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1806.6 1867 54.6
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1798.9 1863 54.3
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1791.2 1981 53.1
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1789.6 1967 53.0
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1789.6 1991 53.0
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1781.9 2048 51.6
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1766.1 2005 52.0
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1760.0 1915 52.6
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1757.7 1958 52.3
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1752.3 1882 52.1
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1740.7 1800 53.3
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1736.1 1933 52.3
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1716.0 1345 65.7
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1697.9 1911 50.5
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1697.6 1894 51.3
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1695.6 1899 50.4
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1681.8 1900 51.5
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1678.3 1883 50.7
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1675.2 1601 58.8
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1669.4 1867 52.5
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1669.4 1867 52.5
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1660.2 1997 49.4
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1658.7 1913 50.5
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1656.0 1900 50.5
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1630.9 1861 50.7
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1625.9 1904 49.4
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1621.7 1812 50.9
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1594.7 1487 56.8
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1554.3 1900 48.3
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1546.6 1901 48.4
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1543.1 1250 64.0
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1513.0 1869 47.9
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1448.7 1055 70.7
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1096.3 1721 40.2
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 8.8e-306 1054.7 1543 40.7
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 5.9e-302 1042.0 1004 59.7
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 4.5e-294 1015.8 1954 36.0
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 5.9e-294 1015.4 1652 38.7
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 2.3e-290 1003.4 983 55.4
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 6.3e-288 995.3 1872 37.6
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 6.6e-285 985.3 1896 37.4
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 4.9e-264 916.0 915 55.3
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 3.2e-263 913.3 1052 50.5
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 4.3e-260 902.9 908 58.0
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 1.6e-251 874.4 1091 52.3
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.5e-244 850.5 1081 47.3
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.6e-230 804.7 1003 48.5
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 9.6e-220 768.8 1462 35.2
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 3.9e-205 720.3 1788 30.5
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.0e-189 669.1 593 61.4
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 1.7e-176 625.2 1171 36.5
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 1.5e-167 595.5 548 58.8
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 5.4e-162 577.0 473 64.7
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 4.4e-140 504.2 884 40.0
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.2e-134 486.1 711 43.0
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.7e-128 465.7 582 46.6
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.5e-127 462.6 573 45.4
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.9e-122 445.7 545 47.3
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.2e-116 426.4 638 45.8
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 1.7e-94 352.8 279 66.7
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 6.7e-80 304.3 385 48.6
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 5.5e-66 258.1 438 37.9
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 3.4e-63 248.8 376 41.2
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 2.7e-52 212.6 158 66.5
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 5.9e-52 211.5 555 30.5
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 1.0e-51 210.7 232 47.8
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 8.0e-49 201.1 373 39.4
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 6.4e-46 191.4 704 30.3
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 2.4e-45 189.5 139 71.2
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 8.0e-41 174.5 349 37.8
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 6.8e-40 171.4 105 79.0
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.0e-39 169.9 228 40.8
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 4.9e-38 165.2 195 47.7
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.6e-36 160.2 81 90.1
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 2.7e-36 159.5 90 87.8
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 4.6e-36 158.7 432 35.2
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 6.6e-35 154.8 93 81.7
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 2.2e-30 139.8 173 45.7
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 2.4e-29 136.3 1258 19.8
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 2.7e-28 132.9 117 59.0
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 7.8e-28 131.3 172 44.2
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 7.8e-28 131.3 158 50.6
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 1.9e-26 126.7 173 42.2
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 5.6e-26 125.2 160 45.6
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 7.3e-26 124.8 157 45.9
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 2.2e-22 113.2 412 25.7
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 2.3e-19 103.2 121 48.8
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 3.9e-19 102.4 56 83.9
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 7.3e-18 98.2 229 34.5
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 2.4e-13 83.2 56 67.9
Psat3g007520 Pisum sativum HOM05D000467 ORTHO05D000379 4.2e-13 82.4 130 40.8
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 4.6e-12 79.0 59 69.5
Psat1g112240 Pisum sativum HOM05D004392 ORTHO05D029174 1.3e-11 77.4 61 60.7
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 4.3e-10 72.4 70 51.4
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 2.1e-09 70.1 104 43.3
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 3.6e-09 69.3 59 57.6
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 2.4e-08 66.6 90 52.2
FvH4_7g01070 Fragaria vesca HOM05D011336 ORTHO05D017014 1.3e-06 60.8 127 40.9
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 3.8e-06 59.3 51 58.8
FAN06G3220 Fragaria x ananassa HOM05D011336 ORTHO05D017014 6.4e-06 58.5 127 39.4


User provided reference genes

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