Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GL6ZL4 Arachis hypogaea HOM05D006021 ORTHO05D007747 7.1e-200 700.3 329 100.0
arahy.Tifrunner.gnm1.ann1.6XU9KP Arachis hypogaea HOM05D001005 ORTHO05D000836 7.7e-61 238.4 172 72.7
arahy.Tifrunner.gnm1.ann1.SUG60F Arachis hypogaea HOM05D001005 ORTHO05D000836 7.7e-61 238.4 172 72.7
Ca_11490_v3 Cicer arietinum L. HOM05D001005 ORTHO05D000836 2.4e-22 110.5 162 43.8
arahy.Tifrunner.gnm1.ann1.5497SD Arachis hypogaea HOM05D000172 ORTHO05D000781 3.2e-22 110.2 124 49.2
arahy.Tifrunner.gnm1.ann1.H077MW Arachis hypogaea HOM05D000172 ORTHO05D000781 3.2e-22 110.2 124 49.2
Psat6g072720 Pisum sativum HOM05D001005 ORTHO05D000836 7.0e-22 109.0 160 43.1
VMungo1383G2446 Vigna mungo HOM05D001005 ORTHO05D000836 8.6e-20 102.1 163 43.6
Psat3g043160 Pisum sativum HOM05D001005 ORTHO05D000836 1.5e-19 101.3 161 43.5
Medtr1g063900 Medicago truncatula HOM05D001005 ORTHO05D000836 1.9e-19 100.9 161 41.0
Lj5g0026670 Lotus japonicus HOM05D001005 ORTHO05D000836 4.3e-19 99.8 160 41.9
Glyma.13G144300 Glycine max HOM05D001005 ORTHO05D000836 7.3e-19 99.0 162 43.8
Phvul.001G178500 Phaseolus vulgaris HOM05D001005 ORTHO05D000836 9.5e-19 98.6 164 42.1
TPR.G9365 Trifolium pratense HOM05D001005 ORTHO05D000836 3.6e-18 96.7 161 42.9
Glyma.10G057500 Glycine max HOM05D001005 ORTHO05D000836 1.4e-17 94.7 161 43.5
Lalb_Chr02g0156041 Lupinus albus HOM05D001005 ORTHO05D000836 6.8e-17 92.4 160 41.2
Ca_08856_v3 Cicer arietinum L. HOM05D001005 ORTHO05D000836 7.5e-16 89.0 161 41.0
Ca_11069_v3 Cicer arietinum L. HOM05D000172 ORTHO05D000781 1.1e-14 85.1 122 41.8
arahy.Tifrunner.gnm1.ann1.LZX2G7 Arachis hypogaea HOM05D001005 ORTHO05D000836 2.4e-14 84.0 173 36.4
Glyma.03G182500 Glycine max HOM05D001005 ORTHO05D000836 6.0e-13 79.3 161 40.4
Psat6g217800 Pisum sativum HOM05D000172 ORTHO05D000781 1.0e-12 78.6 123 37.4
Lalb_Chr06g0165421 Lupinus albus HOM05D000172 ORTHO05D000781 3.9e-12 76.6 126 35.7
TPR.G3257 Trifolium pratense HOM05D000172 ORTHO05D000781 8.6e-12 75.5 121 38.0
Medtr1g107330 Medicago truncatula HOM05D000172 ORTHO05D000781 3.3e-11 73.6 129 36.4
VMungo0720G1990 Vigna mungo HOM05D001005 ORTHO05D000836 4.3e-11 73.2 163 36.8
arahy.Tifrunner.gnm1.ann1.53WLRG Arachis hypogaea HOM05D006021 ORTHO05D007747 9.5e-11 72.0 32 96.9
arahy.Tifrunner.gnm1.ann1.G8Y61E Arachis hypogaea HOM05D006021 ORTHO05D007747 9.5e-11 72.0 32 96.9
CSS0040652 Camellia sinensis var. sinensis HOM05D006021 ORTHO05D007747 2.8e-10 70.5 32 90.6
TPR.G15521 Trifolium pratense HOM05D006021 ORTHO05D007747 2.8e-10 70.5 32 93.8
Aa31LG5G20070 Aethionema arabicum HOM05D006021 ORTHO05D007747 3.6e-10 70.1 57 61.4
Carub.0004s2162 Capsella rubella HOM05D006021 ORTHO05D007747 3.6e-10 70.1 61 55.7
MD01G1126400 Malus domestica HOM05D006021 ORTHO05D007747 3.6e-10 70.1 76 51.3
Rhsim09G0165400 Rhododendron simsii HOM05D006021 ORTHO05D007747 3.6e-10 70.1 52 63.5
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 3.6e-10 70.1 123 36.6
GSVIVG01016534001 Vitis vinifera HOM05D006021 ORTHO05D007747 3.6e-10 70.1 52 63.5
Glyma.20G127800 Glycine max HOM05D000172 ORTHO05D000781 4.7e-10 69.7 122 34.4
Phvul.007G039100 Phaseolus vulgaris HOM05D000172 ORTHO05D000781 4.7e-10 69.7 123 36.6
Phvul.008G012800 Phaseolus vulgaris HOM05D006021 ORTHO05D007747 4.7e-10 69.7 32 93.8
AL4G36960 Arabidopsis lyrata HOM05D006021 ORTHO05D007747 6.2e-10 69.3 61 54.1
AT2G39550 Arabidopsis thaliana HOM05D006021 ORTHO05D007747 6.2e-10 69.3 61 54.1
Medtr7g024540 Medicago truncatula HOM05D006021 ORTHO05D007747 6.2e-10 69.3 32 90.6
A05p06840 Brassica napus HOM05D006021 ORTHO05D007747 8.1e-10 68.9 54 61.1
C04p08110 Brassica napus HOM05D006021 ORTHO05D007747 8.1e-10 68.9 54 61.1
BraA05t19650Z Brassica rapa HOM05D006021 ORTHO05D007747 8.1e-10 68.9 54 61.1
TWI15G0276 Tripterygium wilfordii HOM05D006021 ORTHO05D007747 8.1e-10 68.9 64 54.7
arahy.Tifrunner.gnm1.ann1.AV6GAN Arachis hypogaea HOM05D001181 ORTHO05D001678 1.1e-09 68.6 35 80.0
BcaB02g09111 Brassica carinata HOM05D006021 ORTHO05D007747 1.1e-09 68.6 32 87.5
BcaC02g12082 Brassica carinata HOM05D006021 ORTHO05D007747 1.1e-09 68.6 32 87.5
BolC4t22421H Brassica oleracea HOM05D006021 ORTHO05D007747 1.1e-09 68.6 32 87.5
CANSAT56G3892 Cannabis sativa HOM05D006021 ORTHO05D007747 1.1e-09 68.6 57 57.9
Haze_17048 Corylus avellana HOM05D006021 ORTHO05D007747 1.1e-09 68.6 32 84.4
Lj1g0022473 Lotus japonicus HOM05D006021 ORTHO05D007747 1.1e-09 68.6 32 93.8
Sp4g21840 Schrenkiella parvula HOM05D006021 ORTHO05D007747 1.1e-09 68.6 32 87.5
VMungo1383G0472 Vigna mungo HOM05D006021 ORTHO05D007747 1.1e-09 68.6 32 93.8
FvH4_7g22110 Fragaria vesca HOM05D006021 ORTHO05D007747 1.4e-09 68.2 57 59.6
FAN01G3064 Fragaria x ananassa HOM05D006021 ORTHO05D007747 1.4e-09 68.2 32 87.5
FAN03G1562 Fragaria x ananassa HOM05D006021 ORTHO05D007747 1.4e-09 68.2 32 87.5
FAN06G4047 Fragaria x ananassa HOM05D006021 ORTHO05D007747 1.4e-09 68.2 57 59.6
FAN06G5027 Fragaria x ananassa HOM05D006021 ORTHO05D007747 1.4e-09 68.2 57 59.6
FAN10G0846 Fragaria x ananassa HOM05D006021 ORTHO05D007747 1.4e-09 68.2 57 59.6
Glyma.02G093000 Glycine max HOM05D006021 ORTHO05D007747 1.4e-09 68.2 32 90.6
Glyma.18G289300 Glycine max HOM05D006021 ORTHO05D007747 1.4e-09 68.2 32 90.6
Nn2g10394 Nelumbo nucifera HOM05D006021 ORTHO05D007747 1.4e-09 68.2 32 87.5
PSO151G0110 Papaver somniferum HOM05D006021 ORTHO05D007747 1.4e-09 68.2 57 61.4
vmacro10241 Vaccinium macrocarpon HOM05D006021 ORTHO05D007747 1.4e-09 68.2 52 61.5
arahy.Tifrunner.gnm1.ann1.DDAS79 Arachis hypogaea HOM05D001181 ORTHO05D000504 1.8e-09 67.8 62 50.0
FAN01G2389 Fragaria x ananassa HOM05D006021 ORTHO05D007747 1.8e-09 67.8 57 59.6
MBI05_g44084_MAGBIO Magnolia biondii HOM05D006021 ORTHO05D007747 1.8e-09 67.8 75 49.3
Duzib106G0269 Durio zibethinus HOM05D006021 ORTHO05D007747 2.3e-09 67.4 39 74.4
Lj5g0008199 Lotus japonicus HOM05D000172 ORTHO05D000781 2.3e-09 67.4 134 34.3
Lsat_1_v5_gn_2_119720 Lactuca sativa HOM05D006021 ORTHO05D007747 3.1e-09 67.0 57 59.6
Nitab4.5_0006095g0010 Nicotiana tabacum HOM05D006021 ORTHO05D007747 3.1e-09 67.0 49 65.3
Nitab4.5_0006262g0010 Nicotiana tabacum HOM05D006021 ORTHO05D007747 3.1e-09 67.0 49 65.3
Peaxi162Scf00015g00149 Petunia axillaris HOM05D006021 ORTHO05D007747 3.1e-09 67.0 74 50.0
SGA_v2.0_scaffold108G31009 Striga asiatica HOM05D006021 ORTHO05D002218 3.1e-09 67.0 32 81.2
Ca_07253_v3 Cicer arietinum L. HOM05D006021 ORTHO05D007747 4.0e-09 66.6 32 87.5
Dinv26002 Davidia involucrata HOM05D006021 ORTHO05D007747 4.0e-09 66.6 32 84.4
Hma1.2p1_0683F.1_g202880 Hydrangea macrophylla HOM05D006021 ORTHO05D007747 4.0e-09 66.6 32 84.4
MBI05_g22898_MAGBIO Magnolia biondii HOM05D006021 ORTHO05D007747 4.0e-09 66.6 57 56.1
PSO339G2275 Papaver somniferum HOM05D006021 ORTHO05D007747 4.0e-09 66.6 57 59.6
PGR044G0630 Punica granatum HOM05D006021 ORTHO05D007747 4.0e-09 66.6 32 84.4
RcHm_v2.0_Chr1g0366501 Rosa chinensis HOM05D006021 ORTHO05D007747 4.0e-09 66.6 57 57.9
TAR636G1861 Trochodendron aralioides HOM05D006021 ORTHO05D007747 4.0e-09 66.6 32 84.4
Thhalv10016771m.g Eutrema salsugineum HOM05D006021 ORTHO05D007747 5.2e-09 66.2 84 45.2
Manes.10G031500 Manihot esculenta HOM05D006021 ORTHO05D007747 5.2e-09 66.2 32 84.4
Phvul.007G149800 Phaseolus vulgaris HOM05D001005 ORTHO05D000836 5.2e-09 66.2 164 37.2
Prupe.2G233300 Prunus persica HOM05D006021 ORTHO05D007747 5.2e-09 66.2 57 57.9
Aqoxy2G02096 Aquilegia oxysepala HOM05D006021 ORTHO05D007747 6.8e-09 65.9 57 56.1
Lalb_Chr25g0289031 Lupinus albus HOM05D001005 ORTHO05D000836 6.8e-09 65.9 160 34.4
SalBow6G7105 Salvia bowleyana HOM05D006021 ORTHO05D007747 6.8e-09 65.9 40 65.0
THA.LOC104824271 Tarenaya hassleriana HOM05D006021 ORTHO05D007747 6.8e-09 65.9 31 87.1
Thecc.10G044200 Theobroma cacao HOM05D006021 ORTHO05D007747 6.8e-09 65.9 32 84.4
Atru.chr12.463 Acer truncatum HOM05D006021 ORTHO05D007747 8.9e-09 65.5 32 84.4
Atru.chr12.485 Acer truncatum HOM05D006021 ORTHO05D007747 8.9e-09 65.5 32 84.4
Migut.F01499 Erythranthe guttata HOM05D006021 ORTHO05D007747 8.9e-09 65.5 40 65.0
Psat3g181400 Pisum sativum HOM05D006021 ORTHO05D007747 8.9e-09 65.5 32 84.4
Ciclev10031583m.g Citrus clementina HOM05D006021 ORTHO05D007747 1.2e-08 65.1 57 57.9
Cc02_g08000 Coffea canephora HOM05D006021 ORTHO05D007747 1.2e-08 65.1 32 78.1
ECA238G0092 Erigeron canadensis HOM05D006021 ORTHO05D007747 1.2e-08 65.1 32 84.4
Lalb_Chr10g0091731 Lupinus albus HOM05D006021 ORTHO05D007747 1.2e-08 65.1 32 87.5
MD07G1196300 Malus domestica HOM05D006021 ORTHO05D007747 1.2e-08 65.1 57 56.1
QL08p059185 Quercus lobata HOM05D006021 ORTHO05D007747 1.2e-08 65.1 31 83.9
Sed0015354 Sechium edule HOM05D006021 ORTHO05D007747 1.2e-08 65.1 56 55.4
HPP92_001683 Vanilla planifolia HOM05D006021 ORTHO05D007747 1.2e-08 65.1 32 81.2
Cfa001493 Carpinus fangiana HOM05D006021 ORTHO05D007747 1.5e-08 64.7 31 80.6
Eucgr.J00022 Eucalyptus grandis HOM05D006021 ORTHO05D007747 1.5e-08 64.7 32 81.2
TWI63G0178 Tripterygium wilfordii HOM05D006021 ORTHO05D007747 1.5e-08 64.7 57 54.4
Dinv31447 Davidia involucrata HOM05D006021 ORTHO05D007747 2.0e-08 64.3 33 81.8
HanXRQChr14g0458171 Helianthus annuus HOM05D006021 ORTHO05D007747 2.0e-08 64.3 32 81.2
Solyc05g054520.4 Solanum lycopersicum HOM05D006021 ORTHO05D007747 2.0e-08 64.3 51 60.8
PGSC0003DMG400023528 Solanum tuberosum HOM05D006021 ORTHO05D007747 2.0e-08 64.3 51 60.8
CARHR134420 Cardamine hirsuta HOM05D006021 ORTHO05D007747 2.6e-08 63.9 31 83.9
Cpa.g.sc1.396 Carica papaya HOM05D006021 ORTHO05D007747 2.6e-08 63.9 31 80.6
CiPaw.02G183200 Carya illinoinensis HOM05D006021 ORTHO05D007747 2.6e-08 63.9 31 83.9
MELO3C021654.2 Cucumis melo HOM05D006021 ORTHO05D007747 2.6e-08 63.9 32 81.2
Gohir.A10G216800 Gossypium hirsutum HOM05D006021 ORTHO05D007747 2.6e-08 63.9 32 81.2
Gohir.D10G225700 Gossypium hirsutum HOM05D006021 ORTHO05D007747 2.6e-08 63.9 32 81.2
Gorai.011G256900 Gossypium raimondii HOM05D006021 ORTHO05D007747 2.6e-08 63.9 32 81.2
ATR0559G127 Amborella trichopoda HOM05D006021 ORTHO05D007747 3.4e-08 63.5 32 81.2
arahy.Tifrunner.gnm1.ann1.S35SV6 Arachis hypogaea HOM05D000172 ORTHO05D017450 3.4e-08 63.5 34 82.4
AUR62041863 Chenopodium quinoa HOM05D006021 ORTHO05D007747 3.4e-08 63.5 57 56.1
Migut.F01631 Erythranthe guttata HOM05D006021 ORTHO05D007747 3.4e-08 63.5 40 65.0
Hund12508 Selenicereus undatus HOM05D006021 ORTHO05D007747 3.4e-08 63.5 32 81.2
Sc20g0002660 Simmondsia chinensis HOM05D006021 ORTHO05D007747 3.4e-08 63.5 32 84.4
arahy.Tifrunner.gnm1.ann1.6S2DUF Arachis hypogaea HOM05D000250 ORTHO05D012166 5.8e-08 62.8 51 56.9
ClCG09G019960 Citrullus lanatus HOM05D006021 ORTHO05D007747 5.8e-08 62.8 32 78.1
CsaV3_5G026490 Cucumis sativus L. HOM05D006021 ORTHO05D007747 5.8e-08 62.8 32 78.1
Zm00001eb124350 Zea mays HOM05D006021 ORTHO05D007747 5.8e-08 62.8 31 83.9
Ah.16g107030 Amaranthus hybridus HOM05D006021 ORTHO05D007747 7.5e-08 62.4 32 78.1
CAN.G1013.12 Capsicum annuum HOM05D006021 ORTHO05D007747 7.5e-08 62.4 51 58.8
Potri.008G054500 Populus trichocarpa HOM05D006021 ORTHO05D007747 7.5e-08 62.4 32 75.0
Sabra08G0039300 Salix brachista HOM05D006021 ORTHO05D007747 7.5e-08 62.4 32 75.0
arahy.Tifrunner.gnm1.ann1.T66DM2 Arachis hypogaea HOM05D000172 ORTHO05D017450 9.9e-08 62.0 34 79.4
EL10Ac2g03391 Beta vulgaris HOM05D006021 ORTHO05D007747 9.9e-08 62.0 32 78.1
COL.COLO4_14996 Corchorus olitorius HOM05D006021 ORTHO05D007747 9.9e-08 62.0 30 83.3
DCAR_012451 Daucus carota HOM05D006021 ORTHO05D007747 1.3e-07 61.6 32 78.1
Actinidia29224 Actinidia chinensis HOM05D006021 ORTHO05D007747 1.7e-07 61.2 31 80.6
Os09g0103100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000781 2.2e-07 60.8 137 30.7
Sopen05g033000 Solanum pennellii HOM05D006021 ORTHO05D007747 2.2e-07 60.8 31 77.4
unitig_736.g22256 Utricularia gibba HOM05D006021 ORTHO05D007747 2.2e-07 60.8 32 78.1
Lj1C935G17 Lonicera japonica HOM05D006021 ORTHO05D007747 4.9e-07 59.7 45 62.2
Glyma.10G262850 Glycine max HOM05D000172 ORTHO05D000781 6.4e-07 59.3 120 33.3
CDE09G0041 Ceratophyllum demersum HOM05D006021 ORTHO05D007747 8.3e-07 58.9 31 77.4
MELO3C018487.2 Cucumis melo HOM05D000172 ORTHO05D000781 1.1e-06 58.5 102 35.3
SHI22569 Sapria himalayana HOM05D006021 ORTHO05D007747 1.1e-06 58.5 50 56.0
Sed0009779 Sechium edule HOM05D000172 ORTHO05D000781 1.4e-06 58.2 102 35.3
Aqoxy6G02848 Aquilegia oxysepala HOM05D000172 ORTHO05D000781 1.9e-06 57.8 122 30.3
Cfa017583 Carpinus fangiana HOM05D001005 ORTHO05D000836 1.9e-06 57.8 169 33.1
CsaV3_7G008200 Cucumis sativus L. HOM05D000172 ORTHO05D000781 5.4e-06 56.2 102 34.3
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 5.4e-06 56.2 36 63.9
Prupe.8G135900 Prunus persica HOM05D000172 ORTHO05D000781 5.4e-06 56.2 118 32.2
PSO170G6860 Papaver somniferum HOM05D000172 ORTHO05D000781 7.1e-06 55.8 137 29.2
Peaxi162Scf00152g00236 Petunia axillaris HOM05D000172 ORTHO05D000781 7.1e-06 55.8 122 32.8
GSVIVG01037920001 Vitis vinifera HOM05D000172 ORTHO05D000781 9.2e-06 55.5 114 31.6


User provided reference genes

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