Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 2.1e-244 848.6 420 100.0
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 4.6e-167 591.7 391 74.4
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 2.3e-163 579.3 392 72.4
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 7.5e-162 574.3 392 72.4
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 6.6e-158 561.2 390 71.0
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 4.3e-157 558.5 389 71.2
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 1.6e-156 556.6 403 69.0
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 2.6e-154 549.3 403 67.5
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.3e-153 547.0 389 70.4
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 4.1e-152 542.0 390 69.0
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 6.0e-151 538.1 395 68.4
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 2.0e-146 523.1 390 69.0
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 4.4e-146 521.9 388 66.0
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 1.1e-144 517.3 390 64.1
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 5.4e-144 515.0 402 64.4
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 9.3e-144 514.2 388 64.9
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 9.3e-144 514.2 388 63.7
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 1.6e-143 513.5 335 73.7
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 1.6e-143 513.5 388 63.7
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 2.1e-143 513.1 392 64.5
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 2.7e-143 512.7 394 64.7
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 3.5e-143 512.3 388 63.9
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 6.0e-143 511.5 388 63.1
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.3e-142 510.4 388 66.0
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.0e-142 509.2 390 64.1
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 3.9e-142 508.8 388 64.7
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 6.6e-142 508.1 388 64.9
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 8.7e-142 507.7 387 65.9
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 8.7e-142 507.7 388 63.7
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 9.6e-141 504.2 404 64.1
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.8e-140 502.7 388 62.1
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 4.8e-140 501.9 384 65.1
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 6.2e-140 501.5 388 64.2
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.4e-139 499.6 393 60.8
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.2e-138 497.3 388 63.1
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 5.8e-138 495.0 389 63.0
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 4.2e-136 488.8 390 62.6
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.6e-135 486.9 389 61.7
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 7.9e-135 484.6 390 60.5
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 3.0e-134 482.6 405 60.5
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.1e-131 474.2 359 65.5
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 6.9e-131 471.5 386 61.7
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 4.5e-130 468.8 379 61.7
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 4.5e-130 468.8 391 61.4
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 5.8e-130 468.4 386 61.9
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 6.4e-129 464.9 396 59.3
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 1.9e-128 463.4 387 61.0
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 2.4e-128 463.0 389 59.6
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 2.4e-128 463.0 392 56.9
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 7.1e-128 461.5 391 60.6
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 7.1e-128 461.5 391 60.6
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 2.1e-127 459.9 396 58.8
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 6.0e-127 458.4 396 58.6
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 7.9e-127 458.0 363 62.5
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 1.1e-125 454.1 387 58.4
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.5e-125 453.0 388 56.4
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 3.3e-125 452.6 345 65.5
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 9.6e-125 451.1 416 53.8
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 9.6e-125 451.1 395 56.2
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.6e-124 450.3 362 62.4
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 2.8e-124 449.5 382 57.3
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 4.8e-124 448.7 365 61.9
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 1.8e-123 446.8 387 57.6
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.8e-123 446.8 390 55.9
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 1.5e-122 443.7 385 58.2
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 5.8e-122 441.8 385 57.7
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 1.7e-121 440.3 387 56.3
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 1.2e-119 434.1 387 56.6
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 1.5e-117 427.2 366 59.6
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 7.4e-117 424.9 381 59.8
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 9.7e-117 424.5 316 64.9
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 9.7e-117 424.5 389 56.3
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 2.8e-116 422.9 405 56.0
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.4e-115 420.6 385 55.8
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 3.4e-114 416.0 366 58.5
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.9e-113 412.9 379 56.5
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 8.5e-113 411.4 390 54.4
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.1e-112 411.0 368 58.7
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.4e-112 410.6 391 54.2
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.9e-112 410.2 354 57.1
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 1.9e-112 410.2 403 55.8
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 2.5e-112 409.8 382 54.2
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 3.2e-112 409.5 380 55.0
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 2.7e-111 406.4 390 55.9
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.6e-111 406.0 387 54.0
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 3.6e-111 406.0 365 55.9
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 4.6e-111 405.6 365 55.9
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.3e-110 404.1 374 57.8
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.0e-110 402.9 363 57.3
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.9e-110 402.5 354 57.1
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 1.1e-109 401.0 358 58.4
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.9e-109 400.2 403 55.8
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 2.5e-109 399.8 371 58.0
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 2.5e-109 399.8 371 57.1
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 1.3e-108 397.5 376 57.7
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.7e-108 397.1 377 53.8
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 2.2e-108 396.7 363 57.0
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.2e-108 396.7 389 52.2
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.8e-108 396.4 363 57.0
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.8e-108 396.4 376 53.7
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 1.1e-107 394.4 391 52.4
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.2e-106 391.0 390 52.8
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 1.2e-106 391.0 371 56.9
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.5e-106 390.6 390 52.8
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 2.0e-106 390.2 335 58.2
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 3.4e-106 389.4 373 56.3
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.4e-106 389.4 373 56.3
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.9e-104 383.6 366 56.0
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 4.2e-104 382.5 400 50.8
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.1e-103 380.2 369 53.1
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.7e-103 379.0 404 50.0
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 2.3e-102 376.7 307 62.9
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 3.3e-101 372.9 331 58.6
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 4.4e-101 372.5 362 53.6
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 3.1e-99 366.3 373 53.9
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.0e-98 363.6 362 52.8
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.6e-98 363.2 362 52.8
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 3.4e-98 362.8 334 54.8
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 2.9e-97 359.8 364 51.9
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 2.9e-97 359.8 349 53.9
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 3.8e-97 359.4 362 51.4
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 5.0e-97 359.0 377 50.7
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 8.5e-97 358.2 361 51.2
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 8.5e-97 358.2 361 51.2
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 8.5e-97 358.2 361 51.2
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 4.2e-96 355.9 346 53.2
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 9.4e-96 354.8 396 47.5
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.1e-95 353.6 366 52.7
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 3.0e-94 349.7 401 46.9
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 7.4e-93 345.1 349 50.7
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 1.1e-91 341.3 365 52.3
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 5.0e-89 332.4 389 46.8
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 1.1e-88 331.3 360 50.0
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 7.2e-88 328.6 417 44.8
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.0e-86 324.7 388 46.9
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.5e-85 320.9 388 44.1
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 3.7e-84 316.2 363 47.4
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.1e-83 314.7 388 43.0
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 2.5e-80 303.5 361 45.4
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 1.8e-78 297.4 384 41.9
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 6.8e-78 295.4 356 43.8
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 4.8e-76 289.3 271 54.2
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 1.8e-75 287.3 296 50.7
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 5.9e-74 282.3 342 45.9
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.0e-73 281.6 377 39.5
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.7e-73 280.8 354 44.6
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 2.8e-68 263.5 383 40.7
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.8e-68 263.5 257 54.5
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 4.9e-68 262.7 382 41.1
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 3.5e-66 256.5 388 39.2
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 1.9e-64 250.8 224 56.7
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.2e-60 237.3 297 48.8
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 2.3e-57 227.3 286 42.3
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.7e-52 211.1 231 49.4
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 2.3e-49 200.7 178 55.6
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 2.5e-48 197.2 354 36.4
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 5.2e-46 189.5 173 57.2
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 7.5e-45 185.7 214 48.1
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 1.2e-42 178.3 130 66.2
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 6.8e-38 162.5 211 43.6
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 6.4e-36 156.0 172 50.6
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 4.2e-35 153.3 129 60.5
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.3e-33 147.5 158 48.7
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 6.6e-33 146.0 150 48.0
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 4.3e-32 143.3 284 33.1
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 4.0e-30 136.7 113 58.4
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 9.9e-29 132.1 303 31.0
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 1.9e-27 127.9 330 32.1
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 8.7e-25 119.0 96 59.4
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 1.4e-14 85.1 61 63.9
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 7.6e-13 79.3 368 24.7
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 1.4e-11 75.1 340 23.8
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 2.5e-11 74.3 335 25.4
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 2.5e-11 74.3 335 25.4
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 5.5e-11 73.2 341 25.5
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.0e-09 68.9 46 67.4
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 2.5e-08 64.3 347 24.5
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.8e-07 60.1 48 58.3


User provided reference genes

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