Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 1.3e-310 1069.3 712 100.0
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 9.4e-290 1000.0 712 95.6
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 2.0e-239 832.8 695 84.7
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 1.7e-230 803.1 691 82.6
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 1.1e-229 800.4 706 77.5
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 6.0e-228 794.7 688 78.8
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 3.3e-226 788.9 696 81.3
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 2.0e-223 779.6 685 80.0
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 9.3e-221 770.8 682 81.4
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 1.0e-219 767.3 685 75.5
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 3.0e-219 765.8 699 75.1
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 5.1e-219 765.0 713 75.5
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 6.2e-217 758.1 682 81.4
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 3.9e-211 738.8 694 77.1
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 2.2e-209 733.0 695 76.5
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.4e-208 729.6 704 71.7
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 4.1e-208 728.8 704 74.7
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 6.9e-208 728.0 699 72.7
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.5e-207 726.9 705 74.2
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.7e-206 723.4 696 73.4
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.7e-206 723.4 704 74.1
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.9e-206 722.6 704 74.4
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 6.5e-206 721.5 716 71.6
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 1.1e-205 720.7 691 71.5
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.4e-205 720.3 704 68.3
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 7.2e-205 718.0 716 70.8
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 2.7e-204 716.1 656 78.5
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 3.6e-204 715.7 714 71.6
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 1.0e-203 714.1 705 65.5
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 5.1e-203 711.8 695 71.7
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 8.8e-203 711.1 695 73.1
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 1.3e-201 707.2 709 71.9
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 1.3e-201 707.2 695 73.1
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 1.7e-201 706.8 696 74.9
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 2.8e-201 706.1 706 71.8
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 4.8e-201 705.3 707 75.7
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.8e-200 703.4 715 69.2
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 2.4e-200 703.0 687 73.9
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 3.4e-199 699.1 699 77.3
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 2.9e-198 696.0 700 74.0
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 7.2e-197 691.4 713 71.2
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 7.2e-197 691.4 713 68.4
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 2.7e-196 689.5 717 69.6
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 6.1e-196 688.3 691 73.5
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 2.0e-194 683.3 678 71.8
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 3.7e-193 679.1 734 63.5
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 6.3e-193 678.3 709 71.1
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 8.2e-193 677.9 701 69.9
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 5.3e-192 675.2 693 74.2
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 5.3e-192 675.2 695 73.1
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 9.1e-192 674.5 693 73.7
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.5e-191 673.7 693 73.6
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 7.7e-191 671.4 704 72.0
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 8.5e-190 667.9 695 68.9
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.4e-189 667.2 724 66.7
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 1.4e-189 667.2 702 72.9
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 1.9e-189 666.8 683 69.8
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 5.5e-189 665.2 689 72.9
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 1.0e-187 661.0 701 68.5
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 5.2e-187 658.7 701 71.2
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 2.6e-186 656.4 701 71.2
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 7.4e-186 654.8 694 67.9
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 2.2e-185 653.3 687 69.3
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 2.2e-185 653.3 702 67.8
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 2.8e-185 652.9 685 70.4
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 3.7e-185 652.5 702 68.4
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 4.8e-185 652.1 691 68.7
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 8.2e-185 651.4 706 69.7
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 2.4e-184 649.8 690 68.7
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 2.4e-184 649.8 690 68.7
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 3.1e-184 649.4 690 68.6
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 5.3e-184 648.7 667 70.2
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 5.3e-184 648.7 692 68.8
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 7.0e-184 648.3 692 68.4
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 9.1e-184 647.9 690 68.8
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 9.1e-184 647.9 690 68.8
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 2.0e-183 646.7 707 67.2
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 2.0e-183 646.7 706 69.0
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 2.6e-183 646.4 694 68.7
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 2.6e-183 646.4 697 68.0
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 2.6e-183 646.4 699 71.1
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 3.5e-183 646.0 695 67.9
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 5.9e-183 645.2 695 67.9
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 8.5e-182 641.3 710 64.1
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.9e-181 640.2 670 69.3
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 1.2e-180 637.5 688 71.9
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.0e-179 634.4 690 69.9
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 1.4e-179 634.0 694 70.0
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.8e-179 633.6 719 61.5
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 3.3e-178 629.4 596 69.1
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.3e-177 627.5 689 67.2
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 2.2e-177 626.7 595 77.5
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 3.7e-177 625.9 675 67.9
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.8e-176 623.6 586 74.1
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 1.8e-176 623.6 691 70.9
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 5.3e-176 622.1 683 60.3
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 3.5e-175 619.4 685 63.8
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 3.5e-175 619.4 695 69.4
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 6.5e-174 615.1 592 71.5
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.5e-173 614.0 676 66.9
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 1.5e-173 614.0 725 59.6
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.3e-169 600.9 698 61.2
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.2e-167 594.3 705 63.8
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 2.0e-167 593.6 640 68.3
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.3e-166 590.9 593 72.8
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 9.5e-165 584.7 560 81.8
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 4.9e-161 572.4 677 54.5
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 2.0e-159 567.0 685 62.8
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 1.2e-156 557.8 686 66.0
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 6.1e-156 555.4 518 76.1
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 6.8e-155 552.0 693 62.3
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.0e-151 540.4 695 67.6
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 5.0e-150 535.8 587 65.2
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.2e-145 520.4 724 64.8
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 2.7e-143 513.5 521 73.7
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 1.9e-141 507.3 514 73.5
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 1.3e-126 458.0 721 49.4
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 1.6e-124 451.1 515 62.1
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 8.4e-121 438.7 533 66.8
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 8.4e-121 438.7 659 50.2
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 4.2e-120 436.4 650 50.5
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 6.7e-110 402.5 651 48.8
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 7.1e-104 382.5 314 65.9
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 7.9e-103 379.0 513 55.9
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.3e-102 378.3 291 68.7
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.7e-97 361.3 455 47.0
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.1e-95 354.4 278 65.8
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.3e-94 351.7 473 65.1
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 8.2e-92 342.4 346 66.8
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.0e-81 308.9 251 75.7
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 2.2e-81 307.8 305 57.0
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 6.5e-81 306.2 306 58.8
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 8.5e-81 305.8 502 55.6
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.5e-69 268.5 281 85.8
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 3.7e-68 263.8 218 64.7
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 1.8e-67 261.5 284 54.2
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 9.4e-64 249.2 319 68.7
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 6.1e-63 246.5 216 82.9
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 4.5e-58 230.3 177 60.5
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 4.7e-55 220.3 138 76.8
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 1.1e-51 209.1 282 45.0
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 1.8e-51 208.4 293 44.4
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.6e-50 205.3 230 52.2
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 1.8e-46 191.8 111 83.8
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 9.8e-45 186.0 289 76.5
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 2.8e-44 184.5 111 81.1
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 1.1e-40 172.6 83 95.2
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 1.5e-40 172.2 167 55.1
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.0e-34 151.8 176 54.5
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.0e-29 135.2 102 67.6
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-29 134.0 323 51.7
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 9.8e-29 132.9 102 67.6
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.7e-28 132.1 111 63.1
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.9e-28 130.6 95 68.4
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.1e-24 119.4 128 44.5
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 2.7e-18 98.2 69 66.7
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 6.2e-15 87.0 548 30.3
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 8.1e-15 86.7 68 63.2
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 1.2e-13 82.8 170 35.9
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 3.4e-13 81.3 67 58.2
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 9.9e-13 79.7 67 58.2
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 2.2e-12 78.6 166 33.1
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 8.4e-12 76.6 73 56.2
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 2.4e-11 75.1 549 28.4
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 9.3e-11 73.2 62 58.1
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 1.2e-10 72.8 55 61.8
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.6e-10 70.9 54 63.0
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 3.0e-09 68.2 158 27.2
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 8.7e-09 66.6 118 40.7
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 1.5e-08 65.9 163 34.4
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 3.6e-07 61.2 55 54.5
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 8.1e-07 60.1 44 59.1
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 3.1e-06 58.2 58 50.0
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 3.1e-06 58.2 49 55.1
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 6.9e-06 57.0 67 50.7


User provided reference genes

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