Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 6.9e-105 384.4 263 100.0
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 6.9e-105 384.4 263 100.0
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 9.1e-81 304.3 266 86.5
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 4.0e-76 288.9 281 80.8
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 2.0e-75 286.6 269 83.3
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 2.6e-75 286.2 281 81.5
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 4.1e-73 278.9 272 80.9
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 9.5e-70 267.7 267 80.1
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 4.7e-69 265.4 271 76.4
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 3.0e-68 262.7 266 74.4
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 4.0e-68 262.3 269 75.8
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 5.2e-68 261.9 216 93.5
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 5.2e-68 261.9 265 74.7
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 8.9e-68 261.2 265 76.2
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 4.4e-67 258.8 269 75.8
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 9.8e-67 257.7 269 77.0
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 1.7e-66 256.9 265 75.8
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 2.2e-66 256.5 217 90.3
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 3.7e-66 255.8 220 90.0
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 6.3e-66 255.0 236 84.7
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 6.3e-66 255.0 280 72.5
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 6.3e-66 255.0 236 83.9
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 6.3e-66 255.0 268 76.1
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.4e-65 253.8 270 77.0
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 5.4e-65 251.9 250 76.0
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 9.2e-65 251.1 241 83.8
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 2.0e-64 250.0 278 72.3
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 2.3e-63 246.5 279 72.0
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 3.8e-63 245.7 273 74.7
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 3.8e-63 245.7 226 81.9
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 5.0e-63 245.4 271 75.3
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 5.0e-63 245.4 217 88.0
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 1.5e-62 243.8 278 72.3
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 1.5e-62 243.8 268 72.0
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 1.9e-62 243.4 267 76.0
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.9e-62 243.4 222 81.5
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 1.9e-62 243.4 286 68.5
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 4.3e-62 242.3 212 90.6
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 5.6e-62 241.9 311 47.9
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 5.6e-62 241.9 246 76.0
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 7.3e-62 241.5 284 72.9
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 1.2e-61 240.7 217 81.6
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 2.1e-61 240.0 215 81.4
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 6.1e-61 238.4 270 64.4
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 8.0e-61 238.0 281 70.5
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 1.4e-60 237.3 215 76.7
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 1.4e-60 237.3 216 86.1
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 2.3e-60 236.5 269 74.7
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 3.0e-60 236.1 215 87.9
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 4.0e-60 235.7 221 84.6
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 4.0e-60 235.7 284 72.2
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 5.2e-60 235.3 246 63.0
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 6.8e-60 235.0 215 75.3
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 8.9e-60 234.6 283 72.1
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 1.2e-59 234.2 277 72.9
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 1.5e-59 233.8 229 83.4
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 2.0e-59 233.4 209 90.4
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 4.4e-59 232.3 221 86.0
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 5.7e-59 231.9 281 70.8
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 7.5e-59 231.5 216 88.0
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 7.5e-59 231.5 216 88.0
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 9.8e-59 231.1 216 87.0
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 1.7e-58 230.3 280 70.7
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 2.2e-58 229.9 281 70.5
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 2.2e-58 229.9 284 72.2
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 2.2e-58 229.9 286 68.5
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 3.7e-58 229.2 280 71.1
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 3.7e-58 229.2 281 69.8
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 3.7e-58 229.2 215 75.8
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 1.8e-57 226.9 215 85.1
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 2.4e-57 226.5 223 70.4
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 3.2e-57 226.1 217 85.3
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 5.4e-57 225.3 215 85.1
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 7.0e-57 224.9 196 87.2
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 9.2e-57 224.6 217 84.8
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 2.7e-56 223.0 217 84.3
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 2.7e-56 223.0 217 84.3
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 2.3e-55 219.9 246 61.0
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 2.3e-55 219.9 213 85.0
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 6.6e-55 218.4 254 55.5
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 8.6e-55 218.0 196 88.8
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 2.3e-52 209.9 183 86.9
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 2.3e-52 209.9 193 77.2
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 4.0e-52 209.1 305 46.6
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 6.4e-50 201.8 257 60.3
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 3.2e-49 199.5 231 54.5
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 1.3e-47 194.1 215 66.5
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 7.3e-46 188.3 208 64.9
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 7.3e-46 188.3 209 77.0
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 9.2e-41 171.4 86 93.0
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.6e-40 170.6 187 58.8
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 3.5e-40 169.5 85 92.9
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 1.0e-39 167.9 88 88.6
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.1e-39 165.6 88 89.8
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.1e-39 165.6 88 89.8
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 3.3e-38 162.9 85 91.8
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 9.5e-38 161.4 88 88.6
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 6.8e-36 155.2 85 87.1
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 1.9e-33 147.1 202 77.7
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 5.4e-33 145.6 187 55.6
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.7e-31 140.6 213 71.8
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 3.4e-27 126.3 180 66.7
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 1.9e-25 120.6 143 62.2
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 2.7e-24 116.7 123 56.1
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 5.1e-23 112.5 118 54.2
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 2.2e-18 97.1 66 71.2
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 3.2e-17 93.2 69 68.1
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 7.9e-16 88.6 188 48.9
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 1.3e-13 81.3 63 63.5
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 4.8e-13 79.3 45 84.4
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 5.8e-11 72.4 88 53.4
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 4.9e-10 69.3 66 56.1
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 3.5e-08 63.2 54 63.0
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 2.5e-06 57.0 52 55.8


User provided reference genes

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