Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FN5ZTC Arachis hypogaea HOM05D000921 ORTHO05D002852 3.4e-308 1060.8 538 100.0
arahy.Tifrunner.gnm1.ann1.UYJG1L Arachis hypogaea HOM05D000921 ORTHO05D002852 8.8e-256 886.7 546 87.5
Glyma.18G223300 Glycine max HOM05D000921 ORTHO05D002852 8.3e-214 747.3 548 74.6
Glyma.09G267100 Glycine max HOM05D000921 ORTHO05D002852 7.0e-213 744.2 543 74.6
VMungo1383G3256 Vigna mungo HOM05D000921 ORTHO05D002852 7.0e-213 744.2 540 75.0
Phvul.008G074600 Phaseolus vulgaris HOM05D000921 ORTHO05D002852 1.6e-212 743.0 541 74.3
arahy.Tifrunner.gnm1.ann1.4FT79Q Arachis hypogaea HOM05D000921 ORTHO05D002852 1.6e-209 733.0 546 75.5
LjContig00136g0027596 Lotus japonicus HOM05D000921 ORTHO05D002852 1.1e-208 730.3 551 72.8
Ca_07837_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 1.8e-208 729.6 549 72.7
Lalb_Chr07g0189601 Lupinus albus HOM05D000921 ORTHO05D002852 8.9e-208 727.2 547 72.2
Medtr7g075660 Medicago truncatula HOM05D000921 ORTHO05D002852 9.9e-207 723.8 538 73.2
TPR.G37773 Trifolium pratense HOM05D000921 ORTHO05D002852 6.4e-206 721.1 550 71.8
Lj3g0001885 Lotus japonicus HOM05D000921 ORTHO05D002852 7.1e-205 717.6 549 71.0
Psat3g104040 Pisum sativum HOM05D000921 ORTHO05D002852 2.4e-200 702.6 549 70.3
Lalb_Chr01g0021281 Lupinus albus HOM05D000921 ORTHO05D002852 2.9e-198 695.7 543 70.5
TPR.G28298 Trifolium pratense HOM05D000921 ORTHO05D002852 6.4e-198 694.5 549 68.9
Ca_23824_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 7.6e-191 671.0 529 69.8
Ca_23828_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 7.6e-191 671.0 529 69.8
ClCG05G002030 Citrullus lanatus HOM05D000921 ORTHO05D002852 7.6e-191 671.0 559 65.8
Medtr8g035750 Medicago truncatula HOM05D000921 ORTHO05D002852 1.3e-190 670.2 548 67.5
Glyma.03G021400 Glycine max HOM05D000921 ORTHO05D002852 3.8e-190 668.7 548 66.8
Haze_16736 Corylus avellana HOM05D000921 ORTHO05D002852 2.4e-189 666.0 551 66.4
VMungo0331G0475 Vigna mungo HOM05D000921 ORTHO05D002852 5.4e-189 664.8 533 67.4
QL08p051741 Quercus lobata HOM05D000921 ORTHO05D002852 3.9e-187 658.7 551 64.6
MELO3C006169.2 Cucumis melo HOM05D000921 ORTHO05D002852 5.1e-187 658.3 552 65.8
CsaV3_3G009490 Cucumis sativus L. HOM05D000921 ORTHO05D002852 6.6e-187 657.9 559 65.1
Manes.05G043300 Manihot esculenta HOM05D000921 ORTHO05D002852 2.5e-186 656.0 547 64.7
CANSAT56G4522 Cannabis sativa HOM05D000921 ORTHO05D002852 3.3e-186 655.6 558 64.5
Psat4g150320 Pisum sativum HOM05D000921 ORTHO05D002852 5.6e-186 654.8 550 66.7
Sed0009254 Sechium edule HOM05D000921 ORTHO05D002852 5.6e-186 654.8 553 65.5
CiPaw.02G165500 Carya illinoinensis HOM05D000921 ORTHO05D002852 1.3e-185 653.7 551 65.0
Dinv43732 Davidia involucrata HOM05D000921 ORTHO05D002852 1.6e-185 653.3 557 64.3
Sed0001143 Sechium edule HOM05D000921 ORTHO05D002852 1.6e-185 653.3 552 65.4
Sabra02G0118700 Salix brachista HOM05D000921 ORTHO05D002852 2.8e-185 652.5 551 63.5
Dinv32396 Davidia involucrata HOM05D000921 ORTHO05D002852 4.8e-185 651.7 527 66.8
Potri.002G150000 Populus trichocarpa HOM05D000921 ORTHO05D002852 4.8e-185 651.7 550 63.5
Potri.014G072600 Populus trichocarpa HOM05D000921 ORTHO05D002852 1.8e-184 649.8 552 63.0
CSS0003914 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D002852 1.5e-183 646.7 553 64.2
Gohir.A11G082900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 2.0e-183 646.4 544 64.7
Sabra14G0051800 Salix brachista HOM05D000921 ORTHO05D002852 4.5e-183 645.2 550 63.5
Rhsim07G0024100 Rhododendron simsii HOM05D000921 ORTHO05D002852 5.8e-183 644.8 558 63.8
Gohir.D11G087000 Gossypium hirsutum HOM05D000921 ORTHO05D002852 2.2e-182 642.9 544 64.3
Thecc.01G372900 Theobroma cacao HOM05D000921 ORTHO05D002852 2.9e-182 642.5 552 64.7
Gorai.007G092900 Gossypium raimondii HOM05D000921 ORTHO05D002852 6.4e-182 641.3 544 64.3
Prupe.2G149000 Prunus persica HOM05D000921 ORTHO05D002852 1.1e-181 640.6 551 63.5
RcHm_v2.0_Chr1g0351141 Rosa chinensis HOM05D000921 ORTHO05D002852 1.1e-181 640.6 555 63.2
Actinidia09569 Actinidia chinensis HOM05D000921 ORTHO05D002852 1.6e-180 636.7 553 62.9
Atru.chr5.339 Acer truncatum HOM05D000921 ORTHO05D002852 3.5e-180 635.6 549 63.2
Ciclev10024213m.g Citrus clementina HOM05D000921 ORTHO05D002852 4.6e-180 635.2 552 62.5
FAN03G0226 Fragaria x ananassa HOM05D000921 ORTHO05D002852 4.6e-180 635.2 557 62.5
Aqoxy7G00539 Aquilegia oxysepala HOM05D000921 ORTHO05D002852 1.3e-179 633.6 549 62.7
FAN10G3046 Fragaria x ananassa HOM05D000921 ORTHO05D002852 2.3e-179 632.9 553 62.6
FAN10G3969 Fragaria x ananassa HOM05D000921 ORTHO05D002852 2.3e-179 632.9 553 62.6
Lj9A573G74 Lonicera japonica HOM05D000921 ORTHO05D002852 3.0e-179 632.5 526 66.5
FvH4_7g12350 Fragaria vesca HOM05D000921 ORTHO05D002852 1.5e-178 630.2 557 62.3
Gorai.004G041500 Gossypium raimondii HOM05D000921 ORTHO05D002852 1.9e-178 629.8 542 63.1
Gohir.D08G042932 Gossypium hirsutum HOM05D000921 ORTHO05D002852 4.3e-178 628.6 548 62.4
FAN06G4917 Fragaria x ananassa HOM05D000921 ORTHO05D002852 5.6e-178 628.2 557 62.1
Gohir.A08G031900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 5.6e-178 628.2 548 62.4
MD02G1199600 Malus domestica HOM05D000921 ORTHO05D002852 7.4e-178 627.9 551 62.6
FAN06G2098 Fragaria x ananassa HOM05D000921 ORTHO05D002852 1.6e-177 626.7 557 61.9
Peaxi162Scf00416g00039 Petunia axillaris HOM05D000921 ORTHO05D002852 2.8e-177 625.9 551 63.5
Solyc01g094050.1 Solanum lycopersicum HOM05D000921 ORTHO05D002852 4.8e-177 625.2 549 63.0
TWI14G1087 Tripterygium wilfordii HOM05D000921 ORTHO05D002852 6.2e-177 624.8 553 62.4
Cc02_g36420 Coffea canephora HOM05D000921 ORTHO05D002852 8.1e-177 624.4 538 63.9
TAR629G2419 Trochodendron aralioides HOM05D000921 ORTHO05D002852 8.1e-177 624.4 551 62.4
Sopen01g037870 Solanum pennellii HOM05D000921 ORTHO05D002852 1.8e-176 623.2 549 63.0
TAR629G0908 Trochodendron aralioides HOM05D000921 ORTHO05D002852 5.3e-176 621.7 551 62.3
Lj7C526G8 Lonicera japonica HOM05D000921 ORTHO05D002852 1.5e-175 620.2 550 63.1
CAN.G1561.17 Capsicum annuum HOM05D000921 ORTHO05D002852 3.4e-175 619.0 551 62.6
FAN01G1835 Fragaria x ananassa HOM05D000921 ORTHO05D002852 3.4e-175 619.0 553 62.9
Gorai.004G155500 Gossypium raimondii HOM05D000921 ORTHO05D002852 3.8e-174 615.5 545 62.0
Nn1g01159 Nelumbo nucifera HOM05D000921 ORTHO05D002852 3.8e-174 615.5 549 61.0
Gohir.D08G149700 Gossypium hirsutum HOM05D000921 ORTHO05D002852 2.5e-173 612.8 547 62.0
Sc02g0002400 Simmondsia chinensis HOM05D000921 ORTHO05D002852 4.2e-173 612.1 567 59.8
Gohir.A08G128400 Gossypium hirsutum HOM05D000921 ORTHO05D002852 9.3e-173 610.9 547 61.6
Sc26g0001150 Simmondsia chinensis HOM05D000921 ORTHO05D002852 2.1e-172 609.8 558 60.6
AUR62004245 Chenopodium quinoa HOM05D000921 ORTHO05D002852 6.0e-172 608.2 559 59.6
Migut.F01430 Erythranthe guttata HOM05D000921 ORTHO05D002852 6.0e-172 608.2 545 62.8
DCAR_025120 Daucus carota HOM05D000921 ORTHO05D002852 7.9e-172 607.8 575 59.8
SGA_v2.0_scaffold303G47875 Striga asiatica HOM05D000921 ORTHO05D002852 5.1e-171 605.1 545 61.8
Nn6g34350 Nelumbo nucifera HOM05D000921 ORTHO05D002852 1.9e-170 603.2 549 59.2
Carub.0004s2816 Capsella rubella HOM05D000921 ORTHO05D002852 7.4e-170 601.3 560 58.8
Eucgr.E01352 Eucalyptus grandis HOM05D000921 ORTHO05D002852 7.4e-170 601.3 564 59.6
AUR62013603 Chenopodium quinoa HOM05D000921 ORTHO05D002852 9.6e-170 600.9 559 59.0
Aa31LG1G27030 Aethionema arabicum HOM05D000921 ORTHO05D002852 1.3e-169 600.5 566 59.0
EL10Ac1g00924 Beta vulgaris HOM05D000921 ORTHO05D002852 3.7e-169 599.0 563 58.6
Lsat_1_v5_gn_7_7601 Lactuca sativa HOM05D000921 ORTHO05D002852 6.2e-169 598.2 536 62.3
A05p05550 Brassica napus HOM05D000921 ORTHO05D002852 1.1e-168 597.4 564 57.6
TAR636G1827 Trochodendron aralioides HOM05D000921 ORTHO05D002852 1.8e-168 596.7 551 60.4
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 2.4e-168 596.3 564 57.6
COL.COLO4_12586 Corchorus olitorius HOM05D000921 ORTHO05D002852 2.4e-168 596.3 553 61.5
AT2G45540 Arabidopsis thaliana HOM05D000921 ORTHO05D002852 9.0e-168 594.3 565 58.2
ECA236G3038 Erigeron canadensis HOM05D000921 ORTHO05D002852 2.0e-167 593.2 537 60.9
Thhalv10001277m.g Eutrema salsugineum HOM05D000921 ORTHO05D002852 2.0e-167 593.2 565 58.2
MBI04_g43159_MAGBIO Magnolia biondii HOM05D000921 ORTHO05D002852 2.0e-167 593.2 577 58.4
Sp4g27560 Schrenkiella parvula HOM05D000921 ORTHO05D002852 4.5e-167 592.0 564 58.0
THA.LOC104801996 Tarenaya hassleriana HOM05D000921 ORTHO05D002852 5.8e-167 591.7 577 57.0
PSO782G1119 Papaver somniferum HOM05D000921 ORTHO05D002852 1.3e-166 590.5 549 59.2
AL4G44720 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 6.5e-166 588.2 569 57.6
PSO478G4503 Papaver somniferum HOM05D000921 ORTHO05D002852 1.1e-165 587.4 549 58.8
HanXRQChr04g0122231 Helianthus annuus HOM05D000921 ORTHO05D002852 2.5e-165 586.3 540 60.6
BolC4t22272H Brassica oleracea HOM05D000921 ORTHO05D002852 9.3e-165 584.3 565 56.8
Nitab4.5_0002436g0070 Nicotiana tabacum HOM05D000921 ORTHO05D002852 1.2e-164 583.9 531 62.0
BraA05t19525Z Brassica rapa HOM05D000921 ORTHO05D002852 1.6e-164 583.6 586 55.1
THA.LOC104827617 Tarenaya hassleriana HOM05D000921 ORTHO05D002852 5.1e-163 578.6 573 56.7
Sp5g02330 Schrenkiella parvula HOM05D000921 ORTHO05D002852 1.1e-160 570.9 556 57.6
BraA04t15853Z Brassica rapa HOM05D000921 ORTHO05D002852 2.4e-160 569.7 516 60.3
A04p01340 Brassica napus HOM05D000921 ORTHO05D002852 4.5e-159 565.5 528 59.7
ATR0757G054 Amborella trichopoda HOM05D000921 ORTHO05D002852 7.7e-159 564.7 559 58.0
vmacro13368 Vaccinium macrocarpon HOM05D000921 ORTHO05D002852 2.2e-158 563.1 518 60.8
Thhalv10005733m.g Eutrema salsugineum HOM05D000921 ORTHO05D002852 1.2e-156 557.4 524 58.6
Lsat_1_v5_gn_3_135480 Lactuca sativa HOM05D000921 ORTHO05D002852 1.2e-156 557.4 531 57.4
GSVIVG01027547001 Vitis vinifera HOM05D000921 ORTHO05D002852 1.0e-155 554.3 512 60.0
Carub.0005s2767 Capsella rubella HOM05D000921 ORTHO05D002852 8.8e-155 551.2 555 55.1
Os04g0555600 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 5.7e-154 548.5 554 54.5
CDE11G1134 Ceratophyllum demersum HOM05D000921 ORTHO05D002852 7.4e-154 548.1 534 57.1
HanXRQChr03g0093641 Helianthus annuus HOM05D000921 ORTHO05D002852 1.4e-152 543.9 545 56.7
C04p31670 Brassica napus HOM05D000921 ORTHO05D002852 2.4e-152 543.1 519 57.8
BolC4t24715H Brassica oleracea HOM05D000921 ORTHO05D002852 2.4e-152 543.1 519 57.8
MBI12_g38016_MAGBIO Magnolia biondii HOM05D000921 ORTHO05D002852 3.1e-152 542.7 549 55.0
ECA240G3430 Erigeron canadensis HOM05D000921 ORTHO05D002852 4.1e-152 542.3 540 56.9
AL5G43240 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 7.7e-151 538.1 555 54.2
Oeu029683.1 Olea europaea HOM05D000921 ORTHO05D002852 7.7e-151 538.1 543 56.5
unitig_22.g5373 Utricularia gibba HOM05D000921 ORTHO05D002852 2.2e-150 536.6 540 56.7
Aa31LG10G15130 Aethionema arabicum HOM05D000921 ORTHO05D002852 5.0e-150 535.4 563 54.2
Zm00001eb074430 Zea mays HOM05D000921 ORTHO05D002852 9.4e-149 531.2 545 53.8
BcaC07g42649 Brassica carinata HOM05D000921 ORTHO05D002852 1.5e-146 523.9 531 55.9
BcaC07g40611 Brassica carinata HOM05D000921 ORTHO05D002852 2.6e-146 523.1 544 55.3
BolC8t51174H Brassica oleracea HOM05D000921 ORTHO05D002852 4.4e-146 522.3 544 55.3
DCAR_006882 Daucus carota HOM05D000921 ORTHO05D002852 2.8e-145 519.6 543 54.7
C08p35860 Brassica napus HOM05D000921 ORTHO05D002852 6.3e-145 518.5 544 55.1
A09p53140 Brassica napus HOM05D000921 ORTHO05D002852 8.2e-145 518.1 550 54.0
BraA09t40739Z Brassica rapa HOM05D000921 ORTHO05D002852 8.2e-145 518.1 550 54.0
CARHR171310 Cardamine hirsuta HOM05D000921 ORTHO05D002852 5.3e-144 515.4 534 55.1
Os02g0663300 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 8.2e-137 491.5 542 50.2
Zm00001eb249850 Zea mays HOM05D000921 ORTHO05D002852 1.8e-136 490.3 540 50.4
BcaC02g10197 Brassica carinata HOM05D000921 ORTHO05D002852 9.1e-136 488.0 519 53.9
AT3G60920 Arabidopsis thaliana HOM05D000921 ORTHO05D002852 6.5e-134 481.9 485 56.3
SEGI_07876 Sequoiadendron giganteum HOM05D000921 ORTHO05D002852 3.2e-133 479.6 570 48.8
Oeu003495.3 Olea europaea HOM05D000921 ORTHO05D002852 7.2e-133 478.4 537 51.4
HPP92_003358 Vanilla planifolia HOM05D000921 ORTHO05D002852 1.4e-123 447.6 555 48.1
CARHR140720 Cardamine hirsuta HOM05D000921 ORTHO05D002852 6.3e-121 438.7 458 54.8
SMO347G0262 Selaginella moellendorffii HOM05D000921 ORTHO05D002852 4.5e-119 432.6 523 47.2
AagrBONN_evm.TU.Sc2ySwM_117.767 Anthoceros agrestis HOM05D000921 ORTHO05D002852 9.8e-114 414.8 577 44.2
Phvul.010G049000 Phaseolus vulgaris HOM05D000921 ORTHO05D002852 7.0e-112 408.7 262 79.0
HPP92_009978 Vanilla planifolia HOM05D000921 ORTHO05D002852 4.6e-111 406.0 526 47.5
Mapoly0056s0137 Marchantia polymorpha HOM05D000921 ORTHO05D002852 3.3e-109 399.8 586 42.8
Pp3c8_11180 Physcomitrium patens HOM05D000921 ORTHO05D002852 9.5e-109 398.3 581 43.9
Pp3c25_6190 Physcomitrium patens HOM05D000921 ORTHO05D002852 3.1e-107 393.3 585 43.1
Pp3c16_14330 Physcomitrium patens HOM05D000921 ORTHO05D002852 1.4e-99 367.9 582 40.7
arahy.Tifrunner.gnm1.ann1.P2FPY5 Arachis hypogaea HOM05D000921 ORTHO05D002852 1.4e-88 331.3 550 41.8
AL937U10010 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 2.1e-84 317.4 218 71.6
Gohir.D08G042866 Gossypium hirsutum HOM05D000921 ORTHO05D002852 1.1e-67 261.9 562 36.7
Cpa.g.sc18.152 Carica papaya HOM05D000921 ORTHO05D002852 5.5e-64 249.6 165 72.1
Actinidia31439 Actinidia chinensis HOM05D000921 ORTHO05D002852 9.6e-61 238.8 206 62.1
CBR_g26196 Chara braunii HOM05D000921 ORTHO05D002852 6.0e-55 219.5 599 30.6
MD10G1005600 Malus domestica HOM05D000921 ORTHO05D002852 1.4e-51 208.4 234 53.0
Cpa.g.sc18.151 Carica papaya HOM05D000921 ORTHO05D002852 2.0e-50 204.5 177 63.8
arahy.Tifrunner.gnm1.ann1.JZMQ8V Arachis hypogaea HOM05D000921 ORTHO05D002852 1.2e-34 152.1 92 80.4
Lsat_1_v5_gn_4_182080 Lactuca sativa HOM05D000921 ORTHO05D002852 4.8e-28 130.2 104 66.3
Lsat_1_v5_gn_4_116401 Lactuca sativa HOM05D000921 ORTHO05D002852 4.5e-18 97.1 58 79.3
Lsat_1_v5_gn_4_100180 Lactuca sativa HOM05D000921 ORTHO05D026843 5.9e-18 96.7 58 79.3
AUR62037342 Chenopodium quinoa HOM05D000921 ORTHO05D002852 1.3e-17 95.5 124 49.2
FAN23G1025 Fragaria x ananassa HOM05D000949 ORTHO05D001276 1.3e-17 95.5 106 55.7
Lsat_1_v5_gn_1_91420 Lactuca sativa HOM05D001184 ORTHO05D026843 1.6e-07 62.0 37 83.8


User provided reference genes

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