Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 9.7e-121 436.8 216 100.0
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 3.8e-85 318.5 204 80.4
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 1.0e-82 310.5 195 82.6
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 1.8e-74 283.1 195 72.3
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 2.3e-74 282.7 195 72.8
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 5.2e-74 281.6 195 72.8
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 4.4e-73 278.5 194 72.2
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 9.8e-73 277.3 198 70.7
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 1.3e-72 276.9 198 70.7
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 1.7e-72 276.6 198 70.2
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 2.2e-72 276.2 195 71.3
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 1.4e-71 273.5 195 70.3
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 5.4e-71 271.6 195 70.3
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 2.3e-69 266.2 198 67.7
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 2.3e-69 266.2 198 66.7
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 3.0e-69 265.8 198 69.7
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.9e-69 265.4 198 67.2
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 3.9e-69 265.4 198 67.2
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 6.6e-69 264.6 194 69.6
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 3.3e-68 262.3 195 66.2
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 4.3e-68 261.9 195 65.1
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 5.6e-68 261.5 198 65.2
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 1.6e-67 260.0 195 65.6
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 2.1e-67 259.6 195 65.6
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 2.8e-67 259.2 198 64.1
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 3.6e-67 258.8 195 66.2
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 6.2e-67 258.1 195 65.1
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 6.2e-67 258.1 195 63.6
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 6.2e-67 258.1 195 63.6
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 8.0e-67 257.7 195 63.6
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 1.0e-66 257.3 196 64.3
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 1.4e-66 256.9 206 62.1
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.8e-66 256.5 198 63.1
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 2.3e-66 256.1 194 64.9
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 3.1e-66 255.8 198 63.6
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.2e-66 255.0 195 63.1
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.2e-66 255.0 195 62.1
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 6.8e-66 254.6 211 63.0
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 6.8e-66 254.6 198 63.6
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 8.9e-66 254.2 195 63.6
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 1.5e-65 253.4 195 64.1
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.5e-65 253.4 195 64.1
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 2.0e-65 253.1 195 62.6
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 2.0e-65 253.1 200 62.0
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 2.6e-65 252.7 195 63.1
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.4e-65 251.9 195 61.5
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 7.5e-65 251.1 195 63.1
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 9.8e-65 250.8 195 62.6
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 1.3e-64 250.4 195 62.6
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.3e-64 250.4 195 62.1
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 2.2e-64 249.6 194 63.9
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 3.7e-64 248.8 195 62.6
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 6.4e-64 248.1 198 63.1
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 6.4e-64 248.1 195 62.1
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 1.1e-63 247.3 194 61.9
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.1e-63 247.3 195 62.6
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 1.4e-63 246.9 198 61.6
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 1.9e-63 246.5 195 61.5
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 1.9e-63 246.5 198 61.6
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.4e-63 246.1 198 62.6
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 3.2e-63 245.7 195 62.1
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 4.1e-63 245.4 195 61.5
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 4.1e-63 245.4 195 63.1
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 5.4e-63 245.0 195 63.1
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 5.4e-63 245.0 195 62.6
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 5.4e-63 245.0 195 63.1
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 7.0e-63 244.6 194 61.3
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 1.2e-62 243.8 198 62.1
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 1.6e-62 243.4 195 61.5
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 1.6e-62 243.4 198 60.6
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 2.0e-62 243.0 198 61.6
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 2.0e-62 243.0 198 61.6
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 2.7e-62 242.7 195 61.0
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 4.6e-62 241.9 198 59.6
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 6.0e-62 241.5 198 61.1
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 7.8e-62 241.1 203 60.1
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 1.0e-61 240.7 195 62.1
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 1.7e-61 240.0 198 59.6
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 1.7e-61 240.0 198 62.6
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 3.0e-61 239.2 198 60.1
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 3.0e-61 239.2 197 60.4
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 3.9e-61 238.8 198 59.6
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 3.9e-61 238.8 198 60.1
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 6.6e-61 238.0 198 58.6
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 8.6e-61 237.7 198 59.6
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.1e-60 237.3 195 58.5
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 1.1e-60 237.3 198 59.1
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 1.1e-60 237.3 198 59.1
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 1.9e-60 236.5 198 59.1
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.9e-60 236.5 194 59.8
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 3.3e-60 235.7 198 58.6
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 3.3e-60 235.7 198 58.6
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 9.5e-60 234.2 198 58.6
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.2e-59 233.8 195 58.5
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 1.6e-59 233.4 200 58.5
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 2.8e-59 232.6 198 57.6
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 2.8e-59 232.6 198 58.6
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 3.6e-59 232.3 195 59.5
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.1e-58 230.7 153 72.5
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 8.9e-58 227.6 196 58.2
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 2.6e-57 226.1 198 57.1
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.1e-50 204.1 320 38.8
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 1.5e-49 200.3 155 63.9
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 7.8e-46 188.0 184 53.3
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 8.6e-45 184.5 198 43.9
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 5.6e-44 181.8 195 46.2
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.8e-43 179.5 198 43.4
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 4.7e-43 178.7 198 46.5
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.7e-43 178.7 198 44.4
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 1.1e-42 177.6 131 64.1
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 1.4e-39 167.2 143 59.4
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 6.9e-34 148.3 207 41.5
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 3.4e-33 146.0 110 71.8
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 2.4e-31 139.8 213 39.4
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 6.0e-30 135.2 92 66.3
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.1e-28 131.0 88 69.3
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 1.6e-27 127.1 107 60.7
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 1.1e-26 124.4 107 60.7
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 6.9e-26 121.7 115 55.7
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.2e-25 120.9 205 35.1
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 2.7e-22 109.8 141 43.3
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 4.6e-22 109.0 143 42.0
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 6.0e-22 108.6 63 76.2
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 5.8e-17 92.0 235 25.1
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 4.9e-16 89.0 204 30.9
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 1.4e-15 87.4 67 56.7
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.5e-15 86.7 83 55.4
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 5.5e-15 85.5 83 55.4
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 7.1e-15 85.1 96 49.0
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.6e-14 84.0 64 60.9
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 2.1e-11 73.6 86 46.5
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.3e-08 64.3 200 25.5
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 6.5e-08 62.0 45 66.7


User provided reference genes

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