Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 6.6e-131 470.7 235 100.0
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.0e-115 420.2 242 87.6
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.0e-115 420.2 242 87.6
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 4.9e-110 401.4 242 84.3
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.2e-109 398.7 242 83.5
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 4.6e-108 394.8 242 82.6
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 1.7e-107 392.9 238 83.2
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 3.0e-107 392.1 242 82.2
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 5.1e-107 391.3 241 81.3
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 8.6e-107 390.6 242 81.0
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.5e-106 389.8 242 81.0
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.9e-106 389.4 242 82.2
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 1.9e-106 389.4 242 81.4
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 2.5e-106 389.0 242 81.4
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.3e-106 388.7 242 81.0
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 5.6e-106 387.9 242 82.2
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 7.3e-106 387.5 242 80.2
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 9.6e-106 387.1 242 81.0
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 2.1e-105 386.0 242 79.8
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 2.8e-105 385.6 242 80.2
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 1.4e-104 383.3 242 79.8
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 2.4e-104 382.5 242 79.3
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 2.4e-104 382.5 242 78.9
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 2.4e-104 382.5 242 79.8
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 3.1e-104 382.1 242 78.9
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 6.8e-104 380.9 244 79.1
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 1.5e-103 379.8 242 79.3
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 1.5e-103 379.8 242 79.3
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.4e-103 378.6 242 78.5
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 3.4e-103 378.6 242 78.9
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 3.4e-103 378.6 242 78.9
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 7.6e-103 377.5 242 78.5
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.6e-103 377.5 242 78.1
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 9.9e-103 377.1 242 78.9
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 1.7e-102 376.3 242 78.9
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.7e-102 376.3 238 79.4
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 3.8e-102 375.2 242 78.1
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 3.8e-102 375.2 242 78.5
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 4.9e-102 374.8 242 78.1
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 6.4e-102 374.4 242 77.3
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 1.1e-101 373.6 242 78.5
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.4e-101 373.2 242 77.7
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 1.4e-101 373.2 242 76.9
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.4e-101 373.2 238 78.6
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 1.4e-101 373.2 242 77.3
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.9e-101 372.9 242 76.9
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.9e-101 372.9 242 76.4
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.2e-101 372.1 242 77.7
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.2e-101 371.7 242 77.7
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 4.2e-101 371.7 242 77.3
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 1.2e-100 370.2 242 77.3
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 1.6e-100 369.8 242 76.4
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 2.1e-100 369.4 242 76.4
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.7e-100 369.0 238 77.7
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.0e-99 367.1 242 77.3
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 1.0e-99 367.1 258 73.6
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.3e-99 366.7 242 75.6
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.3e-99 366.7 242 75.6
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.7e-99 366.3 242 76.9
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.0e-99 365.5 242 75.2
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.0e-99 365.5 242 76.0
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 3.9e-99 365.2 242 75.2
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.9e-99 365.2 242 76.0
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 5.1e-99 364.8 242 75.6
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 5.1e-99 364.8 242 75.6
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 5.1e-99 364.8 242 75.2
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 5.1e-99 364.8 242 76.0
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 6.6e-99 364.4 242 75.6
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 6.6e-99 364.4 242 75.6
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 6.6e-99 364.4 242 76.0
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 6.6e-99 364.4 242 75.6
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 8.7e-99 364.0 242 75.6
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 8.7e-99 364.0 242 74.8
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 1.1e-98 363.6 241 75.9
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 1.1e-98 363.6 242 75.2
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 1.5e-98 363.2 242 75.2
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.5e-98 363.2 242 75.2
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 1.9e-98 362.8 242 75.2
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 1.9e-98 362.8 242 76.4
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.9e-98 362.8 242 74.8
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 2.5e-98 362.5 242 76.4
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 3.3e-98 362.1 244 74.2
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 4.3e-98 361.7 242 75.2
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 5.6e-98 361.3 241 74.3
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 5.6e-98 361.3 242 74.8
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 7.3e-98 360.9 242 75.2
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 9.6e-98 360.5 242 75.2
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 9.6e-98 360.5 242 74.4
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 9.6e-98 360.5 242 75.2
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 2.1e-97 359.4 242 74.4
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 4.8e-97 358.2 242 73.6
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 4.8e-97 358.2 242 74.0
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 4.8e-97 358.2 242 73.6
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.4e-96 356.7 242 74.4
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.4e-96 356.7 242 74.8
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.8e-96 356.3 242 72.3
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 2.4e-96 355.9 238 73.5
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 4.0e-96 355.1 238 73.9
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 5.3e-96 354.8 242 71.5
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 5.3e-96 354.8 242 73.6
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 1.5e-95 353.2 242 74.0
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 3.4e-95 352.1 242 73.1
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 4.4e-95 351.7 242 74.0
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 9.9e-95 350.5 242 73.1
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 2.2e-94 349.4 242 74.0
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 2.9e-94 349.0 242 71.5
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 3.8e-94 348.6 242 71.5
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 3.2e-93 345.5 242 70.2
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 4.2e-93 345.1 287 64.5
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 5.4e-93 344.7 242 71.5
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 3.5e-92 342.0 241 71.8
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 4.6e-92 341.7 247 71.3
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 6.6e-91 337.8 242 69.0
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 8.7e-91 337.4 242 71.1
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.1e-88 330.5 224 74.6
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 4.5e-87 325.1 242 66.9
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 4.5e-87 325.1 241 66.8
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 7.6e-87 324.3 242 67.8
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 1.3e-86 323.6 244 67.2
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 8.4e-86 320.9 238 66.4
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 1.8e-83 313.2 238 64.3
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.3e-83 312.8 233 69.5
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 1.2e-79 300.4 204 72.5
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 3.4e-79 298.9 239 63.2
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 5.7e-74 281.6 185 74.6
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.8e-73 279.3 177 78.5
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.5e-71 273.5 183 74.9
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 5.9e-71 271.6 178 74.7
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.0e-70 268.5 168 79.2
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.7e-68 262.7 240 56.2
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.1e-64 250.8 168 74.4
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 2.4e-64 249.6 239 54.8
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 3.3e-58 229.2 244 50.8
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.1e-52 209.9 235 46.4
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.5e-46 188.3 135 71.9
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 9.4e-45 184.5 230 43.5
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 4.8e-41 172.2 229 41.5
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.1e-40 171.0 105 78.1
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 2.5e-29 133.3 76 84.2
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 7.0e-24 115.2 114 52.6
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-23 114.4 101 60.4
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 1.0e-19 101.3 53 88.7
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.5e-18 95.1 63 76.2
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.5e-13 80.9 48 83.3
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 3.4e-10 69.7 52 63.5
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 1.3e-09 67.8 155 31.0
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 1.1e-08 64.7 41 75.6


User provided reference genes

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