Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 0.0e+00 1927.5 962 100.0
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 0.0e+00 1927.5 962 100.0
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 0.0e+00 1388.6 978 73.6
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 0.0e+00 1378.2 976 73.5
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 0.0e+00 1374.8 976 73.1
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 0.0e+00 1364.0 976 72.2
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 0.0e+00 1360.5 976 72.3
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 0.0e+00 1344.3 977 71.6
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 0.0e+00 1344.3 978 72.1
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 0.0e+00 1337.4 966 72.8
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 0.0e+00 1329.7 940 73.0
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 0.0e+00 1296.2 970 69.7
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 0.0e+00 1218.4 949 68.6
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 2.0e-303 1045.8 983 58.8
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 8.5e-302 1040.4 1014 57.6
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.6e-300 1036.2 986 58.4
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 4.4e-298 1028.1 982 57.8
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.8e-288 996.1 986 55.7
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 4.1e-288 995.0 986 55.6
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 3.5e-287 991.9 954 56.6
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 4.5e-287 991.5 981 55.2
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 5.0e-286 988.0 988 55.7
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 6.5e-286 987.6 986 55.4
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 4.0e-283 978.4 986 55.3
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 1.7e-281 973.0 996 54.9
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 1.7e-281 973.0 979 55.2
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 2.9e-278 962.2 982 55.1
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 7.3e-277 957.6 1010 53.4
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 6.8e-275 951.0 986 54.0
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.9e-273 945.7 983 53.6
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 3.7e-273 945.3 980 54.2
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 3.5e-271 938.7 989 54.4
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 3.5e-271 938.7 914 56.0
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 6.6e-270 934.5 987 52.6
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.5e-269 933.3 984 53.8
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 2.1e-268 929.5 938 54.1
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.3e-267 926.0 984 53.5
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 3.4e-266 922.2 981 52.5
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 9.8e-266 920.6 984 52.9
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.2e-265 919.5 961 53.8
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 2.9e-265 919.1 991 53.6
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.4e-264 916.0 971 53.6
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 3.2e-264 915.6 915 55.5
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 2.7e-263 912.5 956 54.1
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 3.0e-262 909.1 918 55.0
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 9.5e-261 904.0 980 51.9
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.2e-260 903.7 997 51.2
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 2.1e-260 902.9 971 52.9
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.3e-257 893.6 989 51.6
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 2.2e-257 892.9 1005 50.5
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 3.9e-254 882.1 990 50.8
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 4.3e-253 878.6 987 50.9
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 4.3e-253 878.6 1000 50.4
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 3.6e-252 875.5 991 51.0
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 8.1e-252 874.4 991 50.8
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 6.8e-251 871.3 982 50.4
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 2.0e-250 869.8 1077 47.9
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 5.8e-250 868.2 976 51.4
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 2.9e-249 865.9 989 51.0
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 6.4e-249 864.8 967 50.2
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 2.1e-247 859.8 954 50.6
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 7.8e-247 857.8 916 51.5
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.0e-246 855.9 988 50.4
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 1.2e-244 850.5 989 50.3
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 3.6e-244 849.0 1008 49.9
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 6.9e-243 844.7 846 56.1
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.6e-242 842.8 988 49.9
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 5.4e-240 835.1 989 49.4
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 5.4e-240 835.1 988 49.4
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 6.0e-239 831.6 963 49.1
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 6.6e-238 828.2 961 48.6
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 3.3e-237 825.9 965 49.8
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 3.3e-237 825.9 948 50.7
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 1.4e-235 820.5 977 50.4
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 1.8e-235 820.1 971 50.1
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 1.2e-234 817.4 971 48.1
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 4.5e-234 815.5 696 60.6
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.2e-233 813.1 828 53.0
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.9e-233 812.8 979 48.2
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 4.9e-233 812.0 967 47.9
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 6.4e-233 811.6 955 48.6
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 7.1e-232 808.1 970 47.7
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 5.1e-230 802.0 678 60.2
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 6.7e-230 801.6 917 50.5
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 4.3e-229 798.9 979 47.1
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 3.7e-228 795.8 963 47.0
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 4.0e-227 792.3 988 48.1
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 9.0e-227 791.2 982 48.2
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.2e-226 790.8 963 48.0
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 4.5e-226 788.9 721 56.6
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 1.3e-222 777.3 962 46.0
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 3.3e-221 772.7 965 45.7
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 1.6e-220 770.4 1022 45.0
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 4.8e-220 768.8 983 45.3
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 2.0e-218 763.5 992 46.7
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 3.4e-218 762.7 984 44.9
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 7.4e-213 745.0 921 46.3
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 9.7e-213 744.6 687 55.7
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.0e-209 734.6 1015 44.9
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 7.7e-202 708.4 986 42.5
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 2.2e-201 706.8 807 49.4
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.1e-200 704.5 639 59.2
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 6.1e-199 698.7 975 44.0
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.4e-195 686.8 861 46.3
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 4.5e-186 656.0 977 41.4
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.1e-184 651.4 682 51.0
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 2.5e-184 650.2 697 49.5
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.4e-182 644.4 949 43.4
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.5e-177 625.2 744 48.5
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 8.0e-175 618.6 470 67.7
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 3.7e-172 609.8 657 50.2
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.2e-165 588.2 725 46.9
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 4.7e-159 566.2 459 63.6
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.1e-151 540.8 947 38.3
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.1e-150 538.5 664 46.5
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.2e-146 525.0 973 37.4
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 1.3e-145 521.5 866 38.8
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 1.1e-142 511.9 453 54.3
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 2.0e-141 507.7 708 44.1
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.4e-134 484.2 706 41.8
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 3.1e-126 457.2 746 39.3
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 7.8e-122 442.6 668 40.0
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 1.3e-111 408.7 517 48.4
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 9.0e-110 402.5 769 34.3
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 7.9e-98 362.8 537 43.8
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 1.1e-96 359.0 292 62.3
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 9.0e-94 349.4 492 42.5
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 5.9e-93 346.7 289 65.1
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 3.6e-90 337.4 431 44.8
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.7e-79 302.0 214 71.5
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 4.1e-70 270.8 219 64.8
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 3.2e-67 261.2 241 56.0
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.7e-65 253.4 181 70.2
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 5.3e-62 243.8 268 52.6
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 1.4e-57 229.2 236 46.6
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 3.7e-55 221.1 270 47.4
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 6.3e-55 220.3 171 69.6
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 1.2e-50 206.1 148 68.9
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.2e-49 200.7 130 77.7
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 3.1e-41 174.9 183 49.7
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 1.3e-39 169.5 114 69.3
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 3.6e-34 151.4 508 27.2
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 2.3e-33 148.7 321 34.3
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 7.1e-30 137.1 199 44.7
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 3.1e-25 121.7 80 73.8
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 2.1e-21 109.0 303 34.3
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 8.6e-20 103.6 536 24.4
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.4e-15 87.4 47 85.1
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 3.2e-14 85.1 72 51.4
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 2.3e-12 79.0 347 27.4
Cre16.g683437 Chlamydomonas reinhardtii HOM05D004501 ORTHO05D004944 1.1e-11 76.6 576 23.1
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 4.4e-08 64.7 47 61.7


User provided reference genes

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