Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 9.1e-102 373.6 195 100.0
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 1.8e-73 279.6 199 77.4
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 1.7e-52 209.9 129 77.5
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 2.5e-51 206.1 129 76.7
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 4.3e-51 205.3 129 75.2
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 1.8e-49 199.9 130 75.4
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 2.3e-49 199.5 153 66.7
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 6.8e-49 198.0 148 68.9
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 6.8e-49 198.0 128 76.6
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 4.9e-47 191.8 146 68.5
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 9.2e-46 187.6 146 65.8
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 2.7e-45 186.0 148 64.9
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 6.0e-45 184.9 149 65.1
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 3.9e-44 182.2 147 63.9
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 1.1e-43 180.6 121 71.9
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 1.5e-43 180.3 148 62.2
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 1.5e-43 180.3 150 65.3
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 2.5e-43 179.5 148 62.2
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 2.5e-43 179.5 148 63.5
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 3.3e-43 179.1 152 64.5
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 4.3e-43 178.7 159 60.4
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 5.6e-43 178.3 149 61.7
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 5.6e-43 178.3 145 62.1
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 7.3e-43 177.9 152 63.8
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 2.8e-42 176.0 156 62.2
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 2.8e-42 176.0 152 63.2
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 8.1e-42 174.5 148 60.1
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 1.1e-41 174.1 156 59.6
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 1.1e-41 174.1 152 63.2
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 1.8e-41 173.3 143 62.2
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 2.4e-41 172.9 156 59.0
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 2.4e-41 172.9 159 59.1
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 4.0e-41 172.2 152 58.6
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 4.0e-41 172.2 149 58.4
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 4.0e-41 172.2 125 68.0
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 5.2e-41 171.8 146 62.3
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 6.8e-41 171.4 156 59.0
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 8.9e-41 171.0 121 67.8
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 8.9e-41 171.0 167 58.1
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 1.2e-40 170.6 144 61.1
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 1.5e-40 170.2 153 62.1
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 2.0e-40 169.9 122 68.0
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 2.0e-40 169.9 123 66.7
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 2.6e-40 169.5 121 68.6
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.6e-40 169.5 151 57.6
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.6e-40 169.5 151 57.6
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 2.6e-40 169.5 123 68.3
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 5.8e-40 168.3 128 68.0
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 7.6e-40 167.9 126 65.1
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 7.6e-40 167.9 138 63.0
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 9.9e-40 167.5 123 65.9
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 9.9e-40 167.5 133 63.9
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 9.9e-40 167.5 149 60.4
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 9.9e-40 167.5 126 65.1
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 1.3e-39 167.2 126 66.7
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 1.3e-39 167.2 132 63.6
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 1.7e-39 166.8 126 64.3
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 3.8e-39 165.6 123 66.7
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 4.9e-39 165.2 128 63.3
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 6.4e-39 164.9 122 63.9
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 8.4e-39 164.5 125 66.4
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 1.1e-38 164.1 121 66.9
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 1.4e-38 163.7 135 60.7
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 2.4e-38 162.9 133 60.2
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 2.4e-38 162.9 121 66.1
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 2.4e-38 162.9 133 60.2
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 2.4e-38 162.9 133 60.2
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 3.2e-38 162.5 143 59.4
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 3.2e-38 162.5 131 61.1
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 4.1e-38 162.2 145 58.6
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 5.4e-38 161.8 121 66.1
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 5.4e-38 161.8 121 65.3
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 7.1e-38 161.4 141 61.0
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 7.1e-38 161.4 121 66.1
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 9.2e-38 161.0 112 70.5
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.2e-37 160.6 105 71.4
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 2.7e-37 159.5 121 65.3
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 6.0e-37 158.3 122 61.5
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 6.0e-37 158.3 105 70.5
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 7.8e-37 157.9 121 62.8
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 1.7e-36 156.8 151 55.0
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 5.1e-36 155.2 120 62.5
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 1.9e-35 153.3 148 56.1
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 3.3e-35 152.5 123 60.2
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 3.3e-35 152.5 120 62.5
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 4.3e-35 152.1 122 59.8
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 4.3e-35 152.1 147 55.8
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 3.6e-34 149.1 120 58.3
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 1.1e-33 147.5 104 68.3
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 1.8e-33 146.7 123 56.1
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 3.4e-32 142.5 102 65.7
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 1.7e-31 140.2 99 69.7
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 5.4e-30 135.2 99 67.7
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 1.6e-29 133.7 118 61.0
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 6.0e-29 131.7 119 61.3
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 6.6e-28 128.3 117 53.0
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 8.7e-28 127.9 120 50.8
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 2.5e-27 126.3 99 63.6
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 3.3e-27 125.9 154 49.4
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 7.3e-27 124.8 165 43.6
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 8.1e-26 121.3 118 48.3
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 5.3e-25 118.6 93 64.5
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 1.2e-24 117.5 118 57.6
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.0e-24 116.7 120 51.7
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 3.4e-24 115.9 105 61.0
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 3.4e-24 115.9 105 53.3
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 9.9e-24 114.4 121 50.4
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 1.3e-23 114.0 95 62.1
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.9e-23 112.8 121 49.6
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 2.9e-23 112.8 103 57.3
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 1.5e-19 100.5 102 47.1
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.8e-18 96.3 98 55.1
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 3.7e-18 95.9 100 44.0
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 9.0e-17 91.3 88 53.4
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 5.8e-16 88.6 90 55.6
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 4.9e-15 85.5 69 62.3
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 4.9e-15 85.5 74 55.4
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 1.9e-14 83.6 110 43.6
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 2.7e-13 79.7 92 45.7
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 1.1e-11 74.3 116 30.2
ECA248G3831 Erigeron canadensis HOM05D002376 ORTHO05D008821 8.2e-10 68.2 73 53.4
EL10Ac2g03070 Beta vulgaris HOM05D000615 ORTHO05D000447 3.2e-06 56.2 33 69.7


User provided reference genes

Program Settings