Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.6e-233 811.2 411 100.0
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.6e-233 811.2 411 100.0
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 1.5e-207 726.1 437 84.7
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 3.5e-204 714.9 437 83.1
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 6.0e-204 714.1 437 82.8
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 8.1e-201 703.7 437 81.7
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 4.0e-200 701.4 433 82.9
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 2.0e-199 699.1 436 81.7
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 2.6e-199 698.7 436 82.1
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 6.8e-192 674.1 437 78.0
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 1.2e-188 663.3 404 83.2
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.7e-187 659.4 457 74.8
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 3.9e-187 658.3 456 74.8
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 8.7e-179 630.6 451 72.1
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.9e-176 620.9 435 73.1
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.5e-175 619.8 435 73.1
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 3.4e-175 618.6 435 72.9
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.1e-173 613.6 435 72.4
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.5e-172 608.6 435 72.0
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 4.6e-172 608.2 434 71.2
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 4.6e-172 608.2 435 72.0
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.1e-168 597.0 432 70.6
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.8e-168 596.3 404 75.5
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.8e-168 596.3 432 69.9
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.4e-168 595.9 435 71.5
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 4.0e-168 595.1 436 70.2
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 2.0e-167 592.8 435 69.0
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 7.6e-167 590.9 436 69.5
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.7e-166 589.7 404 74.8
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.4e-165 586.6 439 69.2
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.5e-165 585.9 432 69.4
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 4.2e-165 585.1 430 70.0
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.2e-164 583.6 432 69.2
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.6e-164 583.2 432 68.8
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.1e-164 582.8 401 74.6
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.1e-164 582.8 401 74.6
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 2.7e-164 582.4 432 67.8
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 3.5e-164 582.0 413 72.9
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 4.6e-164 581.6 401 74.3
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.3e-163 579.3 433 68.8
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.9e-162 576.2 433 68.6
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 4.3e-162 575.1 433 67.4
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 5.7e-162 574.7 400 72.2
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 2.1e-161 572.8 432 67.8
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.8e-161 572.4 432 68.5
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 2.8e-161 572.4 400 72.8
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 2.4e-160 569.3 432 67.8
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 1.2e-159 567.0 435 68.3
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.3e-158 563.5 403 70.0
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 5.0e-158 561.6 380 71.6
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.9e-157 559.7 428 66.4
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.2e-157 558.5 463 62.9
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.2e-156 557.0 383 70.5
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.2e-156 557.0 407 69.5
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 4.6e-156 555.1 433 65.4
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 4.6e-156 555.1 461 64.2
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 3.9e-155 552.0 383 69.7
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 3.9e-155 552.0 382 72.0
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.5e-154 550.1 382 72.5
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.3e-153 547.0 380 68.7
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 2.8e-153 545.8 400 68.0
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 1.1e-152 543.9 426 66.2
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 7.7e-151 537.7 433 65.1
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.9e-150 535.8 433 63.5
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.4e-149 533.5 424 65.6
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 2.5e-149 532.7 417 68.8
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.4e-147 526.9 400 67.5
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 4.1e-144 515.4 411 66.2
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 6.9e-144 514.6 381 68.2
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 6.9e-144 514.6 349 73.1
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 5.9e-143 511.5 380 65.5
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 2.9e-142 509.2 411 65.2
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 3.2e-141 505.8 319 79.6
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 7.2e-141 504.6 431 60.6
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.0e-139 500.7 430 58.4
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 1.4e-139 500.4 433 57.7
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.8e-139 500.0 382 64.4
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 2.3e-139 499.6 443 60.0
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 6.7e-139 498.0 403 61.8
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 8.8e-139 497.7 381 62.5
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.5e-138 496.9 387 66.4
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.4e-138 495.4 381 65.6
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.3e-137 493.8 344 73.5
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.7e-137 493.4 408 60.8
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 2.2e-137 493.0 404 62.6
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.8e-137 492.7 381 63.8
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 2.8e-137 492.7 390 64.4
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 3.7e-137 492.3 382 63.6
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 8.2e-137 491.1 390 64.1
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.1e-136 490.7 382 63.1
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.4e-136 490.3 381 64.6
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 3.1e-136 489.2 433 56.8
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 4.1e-136 488.8 383 63.4
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 5.0e-134 481.9 401 59.4
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 3.2e-133 479.2 384 61.7
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.6e-132 476.9 384 61.5
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 8.0e-132 474.6 307 74.9
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 3.0e-131 472.6 322 72.7
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 6.3e-129 464.9 401 59.6
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 6.3e-129 464.9 433 57.7
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.4e-128 463.8 402 60.2
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 3.1e-128 462.6 383 64.2
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 3.1e-128 462.6 433 58.0
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 3.5e-127 459.1 440 57.5
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.9e-126 456.1 379 60.4
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 5.0e-126 455.3 392 59.9
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.1e-125 454.1 299 75.3
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.8e-121 439.5 434 57.8
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 8.3e-121 438.0 419 54.9
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.0e-118 431.0 386 57.5
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 5.0e-118 428.7 433 54.3
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.5e-117 427.2 353 59.2
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 8.0e-116 421.4 464 52.4
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 8.0e-116 421.4 358 60.6
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.0e-115 421.0 352 60.8
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.5e-114 417.2 383 58.7
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 7.5e-114 414.8 331 63.7
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 1.0e-107 394.4 439 51.5
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 6.8e-107 391.7 433 52.4
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 6.8e-99 365.2 277 66.8
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.4e-96 357.5 321 58.9
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.7e-89 334.0 431 46.9
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 9.5e-85 318.2 362 47.8
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 3.4e-82 309.7 228 63.2
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.8e-82 308.9 227 64.3
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 8.4e-81 305.1 228 63.6
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.9e-80 303.9 277 56.3
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.1e-80 302.0 259 59.1
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 9.2e-80 301.6 227 65.2
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.6e-79 300.8 277 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 5.6e-77 292.4 274 51.5
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 1.1e-75 288.1 157 94.9
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.4e-72 277.7 177 80.8
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.9e-72 277.3 157 89.8
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.4e-72 276.9 156 89.7
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 3.0e-70 270.0 155 88.4
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 2.1e-68 263.8 163 72.4
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 4.8e-68 262.7 193 63.2
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.5e-66 257.7 156 83.3
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.6e-66 255.4 145 89.7
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 6.9e-59 232.3 141 83.0
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 4.5e-58 229.6 460 38.7
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.7e-57 227.6 133 88.0
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.8e-57 226.5 184 65.8
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 3.0e-54 216.9 182 63.2
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 5.6e-53 212.6 333 38.4
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 2.1e-52 210.7 122 86.1
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 3.4e-50 203.4 233 47.2
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 7.6e-50 202.2 486 34.8
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 8.4e-49 198.7 229 45.4
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 2.5e-48 197.2 132 81.1
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 3.0e-46 190.3 155 57.4
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 2.2e-41 174.1 178 57.9
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 5.0e-41 172.9 284 38.4
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 6.5e-41 172.6 106 83.0
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.4e-40 171.4 99 89.9
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.4e-35 154.8 140 57.1
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 1.8e-30 137.9 146 53.4
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.4e-22 111.7 68 85.3
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 1.1e-21 108.6 215 36.3
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 4.8e-20 103.2 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 4.5e-18 96.7 56 91.1
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 7.5e-13 79.3 119 37.8
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 9.7e-13 79.0 257 28.4
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 1.7e-12 78.2 84 51.2
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 4.0e-06 57.0 70 48.6


User provided reference genes

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