Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 0.0e+00 1174.5 568 100.0
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 0.0e+00 1169.1 568 99.5
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 0.0e+00 1166.0 568 99.3
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 0.0e+00 1164.8 568 99.3
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 0.0e+00 1156.4 568 98.4
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 0.0e+00 1126.3 571 96.3
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 6.1e-308 1060.1 568 88.4
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 8.0e-308 1059.7 568 88.4
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.4e-307 1058.9 568 88.0
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 2.3e-307 1058.1 568 88.4
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 2.0e-306 1055.0 570 89.6
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 2.3e-302 1041.6 568 87.9
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 9.5e-301 1036.2 565 87.8
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 3.6e-300 1034.2 569 86.5
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 8.0e-300 1033.1 563 87.0
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 2.3e-299 1031.6 563 86.9
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 3.4e-298 1027.7 562 86.7
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 3.4e-298 1027.7 568 85.6
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 7.5e-298 1026.5 549 89.1
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 1.3e-297 1025.8 564 86.5
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 3.5e-295 1017.7 559 86.9
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 5.9e-295 1016.9 569 85.4
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 5.9e-295 1016.9 570 84.6
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 5.9e-295 1016.9 570 86.3
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 3.0e-294 1014.6 564 85.6
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 3.0e-294 1014.6 559 86.8
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 3.9e-294 1014.2 564 85.8
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 5.0e-294 1013.8 556 87.1
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 6.6e-294 1013.4 565 85.5
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 6.6e-294 1013.4 568 84.2
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.1e-293 1012.7 549 87.1
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.9e-293 1011.9 559 86.2
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 2.5e-293 1011.5 570 85.1
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 3.3e-293 1011.1 568 84.9
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 5.6e-293 1010.4 566 85.5
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.8e-292 1008.1 569 84.4
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 2.8e-292 1008.1 549 86.9
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 3.6e-292 1007.7 573 84.8
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.7e-292 1007.3 569 84.0
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 8.0e-292 1006.5 569 84.4
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 8.0e-292 1006.5 569 84.2
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 1.8e-291 1005.4 549 87.1
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 2.3e-291 1005.0 573 83.4
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 6.8e-291 1003.4 559 85.5
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 8.9e-291 1003.0 551 86.0
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 8.9e-291 1003.0 592 81.1
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 549 86.7
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 549 86.5
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 2.0e-290 1001.9 594 81.0
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 4.4e-290 1000.7 568 83.3
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 7.5e-290 1000.0 549 86.3
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 1.7e-289 998.8 573 83.6
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 6.4e-289 996.9 549 85.1
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.1e-288 996.1 549 86.0
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 1.1e-288 996.1 567 84.3
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 1.9e-288 995.3 549 86.2
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 3.2e-288 994.6 562 83.8
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 4.1e-288 994.2 549 85.1
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 5.4e-288 993.8 549 86.0
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 2.0e-287 991.9 544 86.2
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 2.7e-287 991.5 549 85.4
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 7.8e-287 989.9 549 86.0
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 1.0e-286 989.6 570 83.7
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 1.0e-286 989.6 549 84.9
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 1.7e-286 988.8 549 84.7
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 1.7e-286 988.8 564 84.0
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 3.0e-286 988.0 549 84.7
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 1.5e-285 985.7 564 83.7
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 1.9e-285 985.3 549 85.2
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 3.3e-285 984.6 549 85.2
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 4.3e-285 984.2 565 83.7
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 8.1e-284 979.9 549 85.6
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.4e-283 979.2 569 81.5
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 4.0e-283 977.6 549 83.8
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 4.0e-283 977.6 543 86.0
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 5.2e-283 977.2 549 85.2
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 6.8e-283 976.9 549 83.8
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 8.9e-283 976.5 561 82.2
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 2.6e-282 974.9 550 84.4
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 2.4e-280 968.4 557 83.1
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 9.2e-280 966.5 563 81.3
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.1e-279 965.3 570 81.1
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 2.7e-279 964.9 568 80.6
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.5e-277 958.4 549 82.5
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 7.3e-277 956.8 567 80.4
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 2.4e-275 951.8 567 79.9
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 1.5e-274 949.1 567 79.5
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 1.5e-274 949.1 543 83.4
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 4.4e-274 947.6 547 83.9
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 5.8e-274 947.2 569 81.9
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 3.8e-273 944.5 569 80.7
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.4e-272 941.8 550 81.8
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 3.5e-271 937.9 546 81.5
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 1.0e-270 936.4 527 85.0
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 1.8e-267 925.6 569 79.8
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.2e-263 912.9 573 77.1
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 1.0e-262 909.8 553 78.7
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.3e-262 909.4 568 78.2
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 3.6e-260 901.4 547 76.6
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.3e-254 882.1 553 75.9
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 8.7e-254 880.2 565 75.6
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 1.9e-253 879.0 494 83.8
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 4.3e-253 877.9 559 76.6
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.3e-253 877.9 539 76.8
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.4e-253 877.1 539 76.6
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 2.2e-249 865.5 544 74.6
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 3.7e-244 848.2 554 76.0
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 6.2e-244 847.4 552 76.6
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 6.5e-241 837.4 551 72.2
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 6.0e-239 830.9 455 87.7
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 3.3e-237 825.1 565 73.5
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 7.9e-231 803.9 506 75.9
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 1.8e-230 802.7 549 71.2
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 3.3e-229 798.5 555 68.8
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.2e-226 790.0 424 88.9
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 7.7e-226 787.3 423 88.7
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 2.9e-225 785.4 536 69.4
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.2e-215 753.4 532 67.5
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 3.3e-213 745.3 541 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.9e-209 732.3 537 65.2
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.0e-205 719.5 533 67.0
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.0e-205 719.5 533 67.0
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 1.4e-198 696.8 607 61.1
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 3.4e-173 612.5 330 89.1
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.1e-170 603.2 334 85.3
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 9.5e-168 594.3 292 98.6
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.2e-165 587.4 568 57.2
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 4.2e-147 525.8 546 50.5
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.4e-139 500.7 323 76.2
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.0e-133 480.3 309 75.7
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 3.7e-127 459.5 351 67.8
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.7e-103 380.9 199 90.5
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.7e-88 329.3 500 43.0
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 1.3e-71 275.0 186 68.8
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.1e-70 271.9 336 45.2
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.5e-69 266.9 130 99.2
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 1.5e-59 235.0 133 83.5
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 2.5e-59 234.2 139 81.3
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 4.1e-54 216.9 131 78.6
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 3.3e-51 207.2 137 71.5
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 4.3e-51 206.8 124 79.0
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 5.2e-49 199.9 127 74.0
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 5.2e-49 199.9 127 74.0
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 8.9e-49 199.1 109 78.9
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 2.7e-45 187.6 115 76.5
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 2.7e-45 187.6 115 76.5
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.7e-44 184.9 119 73.1
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.7e-44 184.9 119 73.1
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 8.6e-44 182.6 119 72.3
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 7.3e-43 179.5 95 84.2
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 4.3e-35 153.7 76 89.5
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 6.9e-33 146.4 79 87.3
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 1.4e-25 122.1 118 51.7
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.2e-24 119.0 86 68.6
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 4.5e-24 117.1 189 41.8
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.9e-22 111.7 63 81.0
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 2.1e-21 108.2 68 75.0
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 9.0e-17 92.8 63 71.4
Pp3s42_50 Physcomitrium patens HOM05D065563 ORTHO05D309536 3.4e-08 64.3 269 22.3


User provided reference genes

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