Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 7.4e-189 663.7 331 100.0
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.2e-173 613.2 331 94.9
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 1.5e-160 569.7 328 86.3
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 4.7e-159 564.7 329 85.7
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 1.4e-158 563.1 329 85.7
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 3.1e-158 562.0 329 85.4
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 5.2e-158 561.2 329 85.4
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 5.8e-157 557.8 325 85.2
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 5.0e-153 544.7 326 83.1
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 4.3e-144 515.0 312 81.4
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 3.4e-141 505.4 323 77.4
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.0e-137 493.8 323 76.2
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-136 490.3 323 75.5
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.5e-136 490.0 323 75.9
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 3.6e-135 485.3 324 75.3
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 3.6e-135 485.3 320 75.3
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 8.1e-135 484.2 325 74.5
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.1e-134 483.8 321 74.5
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-134 483.8 321 74.5
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 1.4e-134 483.4 329 75.4
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 8.9e-134 480.7 331 72.8
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 8.9e-134 480.7 325 73.8
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.2e-133 480.3 329 73.3
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 2.0e-133 479.6 334 74.3
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 9.9e-133 477.2 326 72.1
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.7e-132 476.5 326 73.3
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 2.2e-132 476.1 348 70.1
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 2.2e-132 476.1 316 76.3
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 3.8e-132 475.3 323 70.9
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 3.8e-132 475.3 318 75.8
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.1e-131 473.8 337 73.0
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 2.4e-131 472.6 341 71.3
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.2e-131 472.2 337 72.4
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 3.2e-131 472.2 334 71.6
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 4.2e-131 471.9 322 72.0
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 9.3e-131 470.7 341 68.9
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 9.3e-131 470.7 327 74.3
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.6e-130 469.9 333 73.6
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 2.7e-130 469.2 327 73.7
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.5e-130 468.8 341 70.7
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 4.6e-130 468.4 317 75.1
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 7.8e-130 467.6 329 70.5
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 2.3e-129 466.1 320 72.5
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.3e-129 466.1 324 71.9
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.3e-129 466.1 324 71.9
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.1e-128 463.8 349 70.2
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 9.6e-128 460.7 343 67.9
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.4e-126 456.8 321 68.8
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.8e-126 456.4 321 69.5
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.8e-126 456.4 326 69.6
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.4e-126 456.1 355 66.5
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 3.1e-126 455.7 332 70.5
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.6e-125 452.6 322 70.2
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 3.4e-125 452.2 330 67.3
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 3.4e-125 452.2 336 70.5
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 2.2e-124 449.5 323 72.1
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 4.9e-124 448.4 334 66.2
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 4.9e-124 448.4 313 71.2
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 6.4e-124 448.0 321 68.8
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.1e-123 447.2 321 67.9
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 3.2e-123 445.7 334 65.9
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 4.2e-123 445.3 322 70.2
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 4.2e-123 445.3 332 68.4
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 7.1e-123 444.5 321 69.2
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.1e-122 443.0 330 66.1
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 6.0e-122 441.4 336 70.8
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 7.9e-122 441.0 323 67.2
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.0e-121 440.7 324 67.9
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.3e-121 440.3 317 69.1
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 3.0e-121 439.1 335 66.6
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 5.1e-121 438.3 315 68.3
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.5e-120 436.8 326 67.8
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 3.3e-120 435.6 313 69.0
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.3e-119 433.7 324 67.3
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 6.2e-119 431.4 297 73.1
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.8e-118 429.9 320 68.8
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 6.9e-118 427.9 334 66.5
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.5e-117 426.8 321 67.3
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 2.6e-117 426.0 324 66.7
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 5.8e-117 424.9 321 67.0
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 5.8e-117 424.9 324 66.7
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 3.8e-116 422.2 322 65.2
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 3.2e-115 419.1 291 71.5
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 9.3e-115 417.5 327 67.0
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 1.2e-114 417.2 320 67.2
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 3.5e-114 415.6 309 68.6
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 2.3e-113 412.9 293 72.7
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 6.7e-113 411.4 308 67.5
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.1e-112 410.6 329 63.8
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 3.3e-112 409.1 315 66.3
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 4.3e-112 408.7 251 79.7
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 5.6e-112 408.3 319 65.5
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 7.4e-112 407.9 315 66.3
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.3e-111 407.1 290 70.7
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 2.1e-111 406.4 317 67.2
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 3.1e-110 402.5 322 64.9
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 5.3e-110 401.7 315 66.0
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.5e-109 400.2 287 71.4
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 4.5e-109 398.7 351 59.5
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.0e-108 397.5 298 69.5
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.9e-107 393.3 292 69.2
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.5e-107 392.9 327 64.2
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 7.1e-107 391.3 324 63.0
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 1.6e-103 380.2 333 59.8
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 1.4e-102 377.1 298 66.8
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 4.1e-102 375.6 316 61.4
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 7.6e-101 371.3 304 63.8
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.7e-100 370.2 281 68.0
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 3.8e-100 369.0 298 66.8
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.7e-98 362.8 255 70.2
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 7.9e-98 361.3 339 59.3
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 4.3e-96 355.5 218 75.7
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 6.3e-95 351.7 267 68.2
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.4e-94 350.5 221 76.9
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 5.3e-94 348.6 295 60.3
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.5e-93 347.1 236 72.9
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 6.5e-92 341.7 322 58.7
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 9.7e-88 327.8 245 70.6
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.0e-84 315.5 261 64.0
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 2.5e-83 313.2 327 50.8
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 5.5e-83 312.0 263 61.6
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 8.8e-81 304.7 304 54.3
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 5.3e-78 295.4 228 68.4
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 1.7e-76 290.4 292 56.2
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 9.4e-75 284.6 228 64.5
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 2.3e-73 280.0 194 77.3
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 3.3e-72 276.2 273 54.2
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 4.4e-72 275.8 251 62.2
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 4.8e-71 272.3 268 57.8
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 4.5e-69 265.8 232 57.3
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 2.9e-68 263.1 173 68.2
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 5.0e-68 262.3 158 75.3
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 8.5e-68 261.5 213 68.1
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.1e-67 261.2 223 63.7
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.4e-64 249.6 212 61.8
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.6e-61 240.7 221 57.9
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.6e-61 240.7 221 57.9
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 5.7e-56 222.2 230 50.4
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 9.8e-56 221.5 228 56.1
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.3e-55 221.1 223 56.5
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 2.2e-55 220.3 191 62.8
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 5.9e-53 212.2 280 50.0
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 5.0e-52 209.1 140 71.4
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 4.3e-51 206.1 141 72.3
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.1e-46 191.4 251 43.0
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 7.8e-45 185.3 230 45.7
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.1e-42 177.2 114 70.2
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.7e-39 167.5 152 52.0
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 2.4e-38 163.7 148 55.4
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.2e-37 161.4 177 52.0
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.2e-37 161.4 177 52.0
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 1.2e-37 161.4 160 50.0
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.6e-37 161.0 259 36.3
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.6e-37 161.0 176 52.3
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 2.0e-37 160.6 122 72.1
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 6.6e-36 155.6 113 63.7
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 3.6e-34 149.8 186 51.1
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 3.7e-31 139.8 151 47.0
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.5e-27 127.9 174 49.4
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 1.6e-26 124.4 101 68.3
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 2.3e-25 120.6 108 61.1
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.3e-23 114.8 81 66.7
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.3e-23 114.8 99 57.6
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 2.2e-23 114.0 82 67.1
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 6.4e-23 112.5 108 48.1
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.1e-22 111.7 75 58.7
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.4e-22 111.3 70 62.9
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 2.4e-22 110.5 79 59.5
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 7.1e-22 109.0 98 61.2
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 1.0e-20 105.1 69 63.8
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 1.0e-20 105.1 69 63.8
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 1.0e-20 105.1 99 48.5
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 5.1e-20 102.8 313 27.5
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.9e-19 100.9 67 62.7
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 2.5e-19 100.5 74 59.5
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 2.5e-19 100.5 74 59.5
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 3.3e-19 100.1 98 44.9
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.8e-17 94.4 73 54.8
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.8e-17 94.4 73 54.8
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.2e-14 83.2 78 52.6
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 1.6e-13 81.3 107 41.1
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.7e-13 80.5 73 63.0
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 1.1e-11 75.1 176 36.4
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 4.9e-07 59.7 70 45.7
EL10Ac2g03558 Beta vulgaris HOM05D003601 ORTHO05D004896 1.1e-06 58.5 68 48.5
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 1.1e-06 58.5 68 50.0
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.1e-06 58.5 89 46.1


User provided reference genes

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