Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 0.0e+00 1512.7 1016 100.0
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 0.0e+00 1494.9 1016 99.1
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 0.0e+00 1199.1 1043 83.0
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 0.0e+00 1182.9 1042 82.8
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 0.0e+00 1182.9 1042 82.8
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 0.0e+00 1182.5 1046 83.3
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 0.0e+00 1138.3 1042 81.6
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 0.0e+00 1133.2 1044 80.7
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 0.0e+00 1118.2 1043 79.6
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 0.0e+00 1116.7 1050 79.1
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 0.0e+00 1109.4 1050 79.1
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 0.0e+00 1101.7 1043 78.3
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 0.0e+00 1092.0 1041 77.8
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 1.9e-307 1059.3 1042 77.3
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 2.3e-297 1025.8 1043 75.2
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 1.3e-295 1020.0 1041 75.1
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 1.3e-284 983.4 909 83.1
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 7.2e-283 977.6 1060 72.1
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 1.6e-282 976.5 1049 72.7
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 4.8e-279 964.9 1050 72.7
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 3.3e-272 942.2 1047 71.6
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 4.1e-270 935.3 1091 70.3
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 9.1e-270 934.1 1114 68.1
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 1.5e-269 933.3 1112 67.3
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 4.5e-269 931.8 1107 68.9
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 4.5e-269 931.8 1046 71.1
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 1.0e-268 930.6 1050 71.6
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 2.9e-268 929.1 1109 67.7
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 1.9e-267 926.4 1052 70.6
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 4.2e-267 925.2 1048 70.1
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.6e-266 923.3 1058 69.8
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 4.7e-266 921.8 1077 69.5
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 7.9e-266 921.0 1088 69.4
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 2.3e-265 919.5 1051 70.2
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.0e-264 916.4 1083 69.3
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 2.6e-264 916.0 1097 67.5
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 2.6e-264 916.0 1045 69.5
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 9.7e-264 914.1 1052 59.1
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 4.8e-263 911.8 1108 67.9
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 2.4e-262 909.4 1112 66.8
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 5.3e-262 908.3 1108 67.6
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 2.0e-261 906.4 1112 66.7
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 1.3e-260 903.7 1112 66.7
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 2.9e-260 902.5 1084 67.6
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 6.5e-260 901.4 1110 67.4
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 1.5e-259 900.2 1058 69.5
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 5.5e-259 898.3 1128 65.9
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 7.2e-259 897.9 1109 67.4
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 8.8e-257 891.0 1055 69.1
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 3.3e-256 889.0 1057 69.0
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 8.2e-255 884.4 1048 68.9
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 2.5e-251 872.8 1043 68.5
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 9.8e-248 860.9 1067 65.8
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 6.3e-247 858.2 1092 66.6
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 1.1e-246 857.4 1084 64.6
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.1e-246 857.4 1092 66.5
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 1.4e-246 857.1 1073 65.1
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 5.4e-246 855.1 1050 67.9
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 1.2e-245 854.0 1071 65.3
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 1.6e-245 853.6 1056 67.0
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 5.9e-245 851.7 1113 64.4
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 7.7e-245 851.3 1039 68.3
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 4.2e-243 845.5 1048 66.0
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 4.2e-243 845.5 1076 65.9
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 6.1e-242 841.6 1048 67.9
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 6.1e-242 841.6 1056 66.4
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 3.0e-241 839.3 1041 67.7
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 5.2e-241 838.6 1062 64.6
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.5e-240 837.0 1077 66.5
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 2.0e-240 836.6 1055 61.9
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 2.0e-240 836.6 1049 67.5
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 2.6e-240 836.3 1046 66.6
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 5.7e-240 835.1 1078 63.9
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 7.5e-240 834.7 1089 66.1
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 1.2e-237 827.4 1058 60.8
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 8.6e-236 821.2 1066 64.1
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 3.3e-235 819.3 1207 43.6
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 4.0e-233 812.4 1038 66.1
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 1.2e-232 810.8 1056 65.3
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 3.4e-232 809.3 1046 66.5
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 4.4e-232 808.9 498 80.7
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 9.8e-232 807.7 1146 43.1
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 6.4e-231 805.1 1051 64.4
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.1e-230 804.3 1060 65.8
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 4.7e-226 788.9 1064 63.3
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 1.8e-225 786.9 1031 64.3
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 4.0e-225 785.8 1042 64.7
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 4.0e-225 785.8 954 63.8
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 5.2e-225 785.4 1044 65.0
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 9.8e-224 781.2 1039 64.5
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 5.4e-222 775.4 1049 65.9
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 2.8e-218 763.1 485 76.3
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 1.5e-211 740.7 498 70.9
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 4.0e-209 732.6 497 71.4
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 1.7e-207 727.2 920 69.9
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.5e-197 693.0 827 61.4
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 5.3e-193 679.1 1047 57.1
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 9.3e-190 668.3 1041 52.2
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 1.1e-187 661.4 489 66.5
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 1.5e-179 634.4 792 75.1
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 2.0e-176 624.0 1045 58.0
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 4.2e-166 589.7 982 56.1
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 3.3e-163 580.1 482 60.8
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 7.4e-163 578.9 911 62.5
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 1.1e-134 485.3 837 64.5
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 3.4e-131 473.8 1028 44.5
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 5.7e-123 446.4 438 54.6
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 9.5e-118 429.1 240 82.9
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 1.2e-112 412.1 1043 44.0
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 2.7e-96 357.8 700 59.0
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 1.1e-89 335.9 200 78.5
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 1.8e-84 318.5 539 36.5
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 4.4e-83 313.9 338 55.3
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 5.6e-78 297.0 899 33.3
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 4.8e-77 293.9 348 53.7
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 1.1e-76 292.7 179 73.7
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 2.1e-69 268.5 177 74.0
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 2.6e-67 261.5 197 73.6
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.7e-61 241.1 345 49.3
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 4.9e-58 230.7 479 35.9
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 1.0e-55 223.0 454 32.6
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 1.1e-52 213.0 299 48.8
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 9.0e-52 209.9 249 51.4
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 3.9e-47 194.5 181 58.6
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 3.1e-44 184.9 131 62.6
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 3.1e-44 184.9 99 83.8
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 3.8e-42 177.9 198 53.0
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 1.9e-41 175.6 130 66.9
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 3.2e-41 174.9 130 66.9
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 9.7e-38 163.3 93 87.1
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.8e-37 161.0 111 73.0
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 3.1e-36 158.3 120 70.8
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.0e-34 153.3 93 79.6
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 5.2e-31 141.0 93 74.2
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.1e-30 139.8 75 77.3
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 9.4e-25 120.2 105 61.0
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 4.7e-24 117.9 83 73.5
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 5.3e-20 104.4 126 46.8
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 4.4e-14 84.7 120 39.2
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.8e-12 79.3 44 84.1
CBR_g36362 Chara braunii HOM05D004966 ORTHO05D006199 2.4e-12 79.0 139 33.8
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 2.1e-08 65.9 49 53.1
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.0e-07 62.0 40 72.5
arahy.Tifrunner.gnm1.ann1.48QRQ3 Arachis hypogaea HOM05D002189 ORTHO05D002233 8.9e-07 60.5 38 73.7
HanXRQChr06g0176501 Helianthus annuus HOM05D004966 ORTHO05D006199 7.5e-06 57.4 36 69.4


User provided reference genes

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