Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 8.4e-271 936.4 469 100.0
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 3.1e-265 917.9 469 97.7
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 7.8e-208 727.2 465 76.3
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 1.6e-205 719.5 466 76.2
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 2.0e-203 712.6 475 75.4
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 3.4e-203 711.8 466 75.5
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 2.2e-202 709.1 439 77.7
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 9.2e-201 703.7 460 75.2
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 1.1e-198 696.8 468 74.4
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 1.3e-175 620.2 442 66.7
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 1.3e-175 620.2 465 65.2
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 1.3e-175 620.2 458 64.8
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 6.6e-175 617.8 466 64.6
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 4.3e-174 615.1 436 67.4
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 1.6e-173 613.2 447 66.7
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 3.6e-173 612.1 457 65.0
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 6.2e-173 611.3 450 64.2
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.4e-172 610.1 450 64.2
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 2.4e-172 609.4 449 65.5
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 2.4e-172 609.4 444 65.3
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 4.9e-170 601.7 433 66.1
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 1.2e-168 597.0 444 63.7
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 2.1e-168 596.3 461 63.6
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 3.5e-168 595.5 430 65.6
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 7.9e-168 594.3 430 65.3
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 1.8e-167 593.2 452 64.6
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 5.1e-167 591.7 444 65.8
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 6.7e-167 591.3 464 61.2
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 3.3e-166 589.0 437 63.6
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 3.3e-166 589.0 431 65.7
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 9.6e-166 587.4 442 64.5
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 2.8e-165 585.9 436 66.3
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 6.2e-165 584.7 467 63.0
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 5.3e-164 581.6 412 67.0
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 9.0e-164 580.9 465 61.9
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 6.4e-162 574.7 456 62.1
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 7.1e-161 571.2 460 61.3
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 1.5e-158 563.5 427 63.7
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 1.5e-158 563.5 435 62.8
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 5.3e-156 555.1 429 60.8
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 6.9e-156 554.7 429 62.0
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 6.9e-156 554.7 441 60.8
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 2.0e-155 553.1 445 61.6
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 1.3e-154 550.4 407 64.1
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 1.7e-154 550.1 428 63.1
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 2.9e-154 549.3 449 59.7
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 4.9e-154 548.5 457 61.3
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 2.5e-153 546.2 451 59.6
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 2.5e-153 546.2 434 61.5
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 3.2e-153 545.8 451 59.9
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 4.2e-153 545.4 457 60.8
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 2.7e-152 542.7 432 63.0
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 4.6e-152 542.0 451 59.4
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 4.6e-152 542.0 429 60.1
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 4.6e-152 542.0 457 60.6
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 6.0e-152 541.6 457 60.2
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 6.7e-151 538.1 452 59.5
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 1.5e-150 537.0 418 62.7
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 1.9e-150 536.6 436 60.3
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 1.9e-150 536.6 438 60.5
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 5.7e-150 535.0 438 60.5
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 9.7e-150 534.3 451 59.2
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.2e-149 533.1 451 60.5
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 4.8e-149 531.9 439 60.4
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.4e-148 530.4 451 60.1
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 9.0e-148 527.7 439 59.9
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 9.0e-148 527.7 469 56.5
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 4.5e-147 525.4 455 58.2
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 3.8e-146 522.3 440 60.0
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 3.8e-146 522.3 434 60.4
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 8.5e-146 521.2 335 76.7
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 1.4e-145 520.4 447 57.9
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 4.6e-144 515.4 420 62.4
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 1.8e-143 513.5 470 56.2
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 3.7e-141 505.8 399 61.4
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 1.5e-139 500.4 431 57.5
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.7e-138 496.9 361 64.8
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 9.4e-137 491.1 443 55.5
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 3.3e-134 482.6 495 50.7
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 3.3e-134 482.6 435 56.1
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 3.7e-133 479.2 442 55.9
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 3.1e-132 476.1 431 55.2
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 1.0e-130 471.1 445 52.1
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 2.9e-130 469.5 435 53.3
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 4.1e-124 449.1 447 53.9
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 2.5e-121 439.9 715 38.0
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.0e-119 434.5 442 49.5
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 9.1e-116 421.4 331 60.4
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 3.2e-113 412.9 318 62.9
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 3.0e-111 406.4 312 62.8
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 5.7e-110 402.1 393 53.2
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 8.6e-106 388.3 368 50.3
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 4.2e-105 386.0 364 51.1
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 2.3e-103 380.2 302 60.9
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 1.5e-102 377.5 316 60.1
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 3.4e-102 376.3 314 58.9
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 3.4e-102 376.3 428 47.4
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.6e-99 367.5 401 47.6
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 1.5e-97 360.9 319 57.4
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 1.4e-95 354.4 315 57.5
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.7e-93 347.4 400 47.2
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 5.4e-92 342.4 223 75.8
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 6.6e-82 308.9 220 65.5
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 3.2e-76 290.0 350 46.9
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 1.2e-75 288.1 192 70.8
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.2e-75 288.1 439 40.8
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 8.6e-74 282.0 234 59.0
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 2.6e-70 270.4 212 62.7
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 6.6e-66 255.8 217 57.6
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 3.0e-58 230.3 214 57.9
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 7.6e-54 215.7 141 79.4
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 2.1e-51 207.6 138 76.1
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 2.9e-45 187.2 173 53.8
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 2.5e-44 184.1 134 70.9
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 7.1e-44 182.6 229 43.7
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 1.6e-43 181.4 135 63.0
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 4.3e-41 173.3 148 58.1
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 1.8e-26 124.8 107 55.1
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 3.7e-24 117.1 140 43.6
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 1.0e-21 109.0 374 25.7
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 1.9e-20 104.8 75 66.7
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 9.4e-20 102.4 405 23.0
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 3.6e-19 100.5 405 25.2
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 6.7e-18 96.3 123 48.8
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 3.2e-12 77.4 400 22.0
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 1.2e-11 75.5 59 64.4
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 5.3e-07 60.1 37 81.1


User provided reference genes

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