Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 0.0e+00 1506.5 1006 100.0
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 0.0e+00 1450.6 1039 95.3
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 0.0e+00 1127.1 1041 78.7
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 0.0e+00 1103.6 1036 77.8
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 0.0e+00 1103.6 1037 78.5
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 0.0e+00 1097.0 1043 77.7
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 0.0e+00 1095.1 1044 77.8
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 0.0e+00 1088.9 1044 77.7
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 0.0e+00 1088.9 1044 77.7
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 1.4e-311 1073.2 1040 76.8
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 4.1e-307 1058.1 1049 76.7
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 4.7e-303 1044.6 1043 76.2
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 1.1e-302 1043.5 1043 76.1
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 6.8e-302 1040.8 1043 75.8
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 1.1e-296 1023.5 1041 75.1
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 6.8e-294 1014.2 1041 74.6
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 7.3e-280 967.6 910 81.0
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 2.7e-274 949.1 1049 71.2
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 2.0e-269 932.9 1063 69.7
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 3.8e-268 928.7 1047 70.7
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 1.7e-260 903.3 1043 69.5
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 1.6e-258 896.7 1083 67.1
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 2.1e-258 896.3 1046 69.0
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 7.9e-258 894.4 1122 66.0
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 3.0e-257 892.5 1105 66.3
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 1.5e-256 890.2 1056 67.7
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 2.5e-256 889.4 1047 63.2
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 1.1e-254 884.0 1046 68.7
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 5.3e-254 881.7 1049 68.3
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 9.0e-254 880.9 1115 65.7
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 3.4e-253 879.0 1110 66.2
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 1.3e-252 877.1 1107 65.2
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 1.3e-252 877.1 1061 67.6
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 1.7e-252 876.7 1105 65.5
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 3.8e-252 875.5 1059 67.8
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 6.5e-252 874.8 1110 66.1
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 1.4e-251 873.6 1100 66.5
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 2.5e-251 872.8 1108 66.0
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 3.2e-251 872.5 1046 68.1
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 4.2e-251 872.1 1110 66.0
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 9.3e-251 870.9 1100 65.3
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 1.6e-250 870.2 1049 68.2
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 2.7e-250 869.4 1036 67.6
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 6.1e-250 868.2 1056 57.2
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.9e-249 865.5 1077 66.7
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 6.7e-249 864.8 1186 44.7
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 1.3e-247 860.5 1129 64.3
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 2.8e-247 859.4 1058 67.2
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 9.0e-246 854.4 1045 67.8
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 3.4e-245 852.4 1024 68.5
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 2.9e-244 849.4 1058 66.8
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 3.8e-244 849.0 1110 64.5
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 1.4e-243 847.0 1107 64.4
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 7.2e-243 844.7 1083 65.2
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.2e-242 844.0 1083 65.1
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 2.1e-242 843.2 494 81.8
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 7.9e-242 841.3 1042 66.2
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 3.1e-238 829.3 1050 66.4
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 4.1e-238 828.9 1084 63.9
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 2.0e-237 826.6 1053 65.3
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 4.5e-237 825.5 1013 67.7
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 5.9e-237 825.1 1043 66.8
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 1.7e-236 823.5 1050 65.8
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 8.5e-236 821.2 1041 65.8
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 8.5e-236 821.2 1070 64.7
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 1.1e-235 820.8 1051 66.3
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 3.2e-235 819.3 485 79.4
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 4.7e-234 815.5 1070 65.0
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 1.1e-232 810.8 1055 63.0
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 5.7e-232 808.5 1043 66.2
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 7.4e-232 808.1 1041 66.5
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 6.3e-231 805.1 1047 65.2
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 1.1e-230 804.3 494 76.1
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 4.1e-230 802.4 1109 63.4
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 7.0e-230 801.6 1040 65.5
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 2.0e-229 800.0 1080 61.8
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 1.7e-228 797.0 1084 63.7
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 2.5e-227 793.1 1057 64.8
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 5.5e-227 792.0 1069 62.1
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 7.2e-227 791.6 1069 62.0
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 6.7e-225 785.0 1059 61.6
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 1.5e-224 783.9 1045 63.2
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 2.0e-224 783.5 1034 65.0
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 1.1e-222 777.7 1052 59.2
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 1.8e-222 776.9 493 73.8
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 4.1e-222 775.8 1080 60.6
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 9.1e-222 774.6 1050 63.1
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 5.9e-221 771.9 1134 42.0
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 1.5e-219 767.3 1058 61.1
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 4.4e-216 755.7 916 70.7
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 4.1e-214 749.2 1050 61.6
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 7.7e-213 745.0 1050 61.6
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 7.2e-211 738.4 980 60.2
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 8.0e-210 734.9 1064 60.2
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 1.2e-208 731.1 1028 61.5
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 6.3e-207 725.3 824 62.4
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 1.3e-204 717.6 489 68.5
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 6.4e-183 645.6 1044 55.3
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 6.2e-178 629.0 1052 49.4
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 1.2e-176 624.8 480 61.5
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 1.1e-174 618.2 489 60.1
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 1.8e-169 600.9 969 56.6
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 5.3e-161 572.8 776 73.8
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 3.0e-148 530.4 918 60.2
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 3.8e-135 486.9 446 56.3
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 7.4e-131 472.6 480 49.6
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 1.5e-128 464.9 477 49.1
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 3.8e-127 460.3 836 63.0
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 6.1e-125 453.0 253 82.6
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 6.8e-100 369.8 539 39.0
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 6.1e-93 346.7 506 43.3
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 8.8e-92 342.8 205 74.6
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 2.0e-88 331.6 202 76.7
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 9.2e-73 279.6 456 36.6
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 6.4e-66 256.9 504 36.1
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 2.4e-65 255.0 269 53.9
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 3.5e-64 251.1 173 67.6
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 3.6e-61 241.1 701 52.5
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 1.2e-51 209.5 339 44.5
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 4.9e-50 204.1 186 62.4
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 5.6e-46 190.7 133 63.9
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 1.4e-44 186.0 345 39.7
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 6.9e-44 183.7 183 57.9
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 7.9e-40 170.2 99 73.7
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 2.5e-38 165.2 128 63.3
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 4.3e-38 164.5 128 63.3
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 6.2e-37 160.6 93 84.9
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.8e-35 154.1 112 74.1
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.6e-32 146.0 88 77.3
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 6.7e-31 140.6 343 35.6
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.9e-30 139.0 74 79.7
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 1.4e-28 132.9 93 69.9
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 3.5e-24 118.2 298 34.6
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 1.0e-23 116.7 105 60.0
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 1.4e-20 106.3 141 46.1
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 1.1e-17 96.7 123 43.1
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 1.0e-10 73.6 111 45.9
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 8.5e-10 70.5 46 71.7
arahy.Tifrunner.gnm1.ann1.48QRQ3 Arachis hypogaea HOM05D002189 ORTHO05D002233 1.9e-09 69.3 36 94.4
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 1.8e-07 62.8 38 65.8
ATR0030G038 Amborella trichopoda HOM05D047453 ORTHO05D006199 5.7e-06 57.8 72 43.1
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 7.4e-06 57.4 40 62.5


User provided reference genes

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