Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 2.8e-202 708.4 353 100.0
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 3.2e-190 668.3 353 94.9
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 4.1e-169 598.2 327 89.6
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 5.4e-169 597.8 331 88.5
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 7.0e-169 597.4 329 88.8
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 1.6e-168 596.3 327 89.3
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 8.5e-167 590.5 349 85.7
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 1.1e-166 590.1 331 87.9
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 1.9e-166 589.3 329 88.4
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 2.1e-165 585.9 340 85.9
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 1.8e-164 582.8 323 87.9
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 3.1e-161 572.0 324 85.8
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 7.7e-160 567.4 327 83.2
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 6.6e-159 564.3 324 85.2
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 1.5e-158 563.1 327 82.6
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 1.6e-157 559.7 351 80.1
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 2.8e-157 558.9 332 82.5
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 3.0e-156 555.4 325 83.1
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 4.0e-156 555.1 322 84.5
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 4.0e-156 555.1 327 81.7
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 5.2e-156 554.7 329 81.8
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 5.2e-156 554.7 343 79.3
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 8.9e-156 553.9 341 79.8
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 8.9e-156 553.9 341 79.8
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 2.0e-155 552.7 322 83.2
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 2.6e-155 552.4 327 82.9
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 5.7e-155 551.2 320 82.5
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 7.5e-155 550.8 318 84.0
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.3e-154 550.1 339 79.4
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 1.3e-154 550.1 328 81.4
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 2.2e-154 549.3 337 78.3
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.2e-154 549.3 350 78.3
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 3.7e-154 548.5 350 78.3
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 4.9e-154 548.1 328 81.1
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 6.4e-154 547.7 318 83.3
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 8.3e-154 547.4 348 77.0
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 1.4e-153 546.6 328 80.8
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.8e-153 546.2 339 78.8
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.8e-153 546.2 350 78.0
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 3.2e-153 545.4 342 78.1
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 5.4e-153 544.7 321 81.6
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 1.6e-152 543.1 318 82.7
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 1.6e-152 543.1 318 82.4
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 2.0e-152 542.7 317 82.6
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 2.7e-152 542.3 326 81.3
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 4.6e-152 541.6 336 77.4
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 4.6e-152 541.6 314 82.8
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.7e-151 539.7 336 79.5
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 1.7e-151 539.7 338 76.9
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 1.7e-151 539.7 349 77.4
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 2.3e-151 539.3 321 81.6
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 3.0e-151 538.9 349 76.5
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 5.0e-151 538.1 322 80.1
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 6.6e-151 537.7 328 79.0
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 1.9e-150 536.2 323 79.6
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 3.3e-150 535.4 338 77.8
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 7.3e-150 534.3 326 81.0
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 9.5e-150 533.9 338 76.3
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 2.1e-149 532.7 322 80.1
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 2.8e-149 532.3 317 81.1
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 3.6e-149 531.9 325 79.7
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 4.7e-149 531.6 340 77.4
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 8.0e-149 530.8 336 77.7
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 1.2e-147 526.9 348 75.3
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 2.0e-147 526.2 290 89.3
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 2.0e-147 526.2 349 74.5
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 2.6e-147 525.8 340 76.2
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 4.4e-147 525.0 324 79.0
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 8.3e-146 520.8 328 75.3
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 1.1e-145 520.4 334 77.2
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.4e-145 520.0 339 75.5
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 7.8e-144 514.2 346 75.1
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 7.8e-144 514.2 316 82.9
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 7.8e-144 514.2 326 75.8
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 8.6e-143 510.8 333 75.4
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 1.1e-142 510.4 335 75.5
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 1.5e-142 510.0 321 76.3
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 4.7e-141 505.0 321 75.4
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 1.8e-140 503.1 343 74.3
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 3.1e-140 502.3 346 73.7
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 6.8e-140 501.1 327 75.2
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.2e-139 500.4 299 82.3
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 2.0e-139 499.6 323 74.3
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 2.6e-139 499.2 325 75.1
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 2.6e-139 499.2 321 75.4
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.3e-138 496.9 301 79.7
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 3.7e-138 495.4 322 74.5
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 8.3e-138 494.2 342 71.3
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 4.1e-137 491.9 298 80.9
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 3.5e-136 488.8 333 73.3
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 6.0e-136 488.0 326 73.0
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 6.0e-136 488.0 326 73.0
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 2.3e-135 486.1 327 74.9
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 3.0e-135 485.7 326 72.7
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 3.9e-135 485.3 319 74.0
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 8.1e-133 477.6 325 72.3
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 1.2e-131 473.8 262 85.5
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 3.4e-131 472.2 359 64.9
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.1e-128 463.0 256 85.5
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.0e-127 460.7 255 85.5
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 5.6e-126 454.9 258 83.7
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 1.6e-125 453.4 368 66.0
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 2.8e-125 452.6 319 73.4
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 4.7e-125 451.8 340 67.4
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 8.1e-125 451.1 289 76.1
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 1.5e-118 430.3 278 77.3
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.4e-113 412.9 256 77.7
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.5e-110 403.7 224 85.7
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 3.8e-106 389.0 226 85.8
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 1.6e-104 383.6 325 60.3
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 1.6e-104 383.6 326 58.9
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 6.9e-100 368.2 341 55.7
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 2.5e-86 323.2 281 63.3
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 4.1e-84 315.8 372 49.5
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 1.9e-81 307.0 207 74.9
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 6.3e-77 292.0 206 66.5
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.8e-71 273.9 175 77.7
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 3.0e-71 273.1 150 88.7
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 2.2e-61 240.4 207 59.9
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 5.9e-59 232.3 208 60.1
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 1.1e-52 211.5 329 37.7
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.9e-49 200.7 321 41.1
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 1.0e-47 194.9 177 58.2
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 4.0e-47 193.0 239 45.2
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 2.3e-42 177.2 410 32.2
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 1.1e-41 174.9 114 75.4
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 1.2e-38 164.9 231 48.9
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 5.4e-36 156.0 318 35.5
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 2.0e-35 154.1 121 62.8
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 2.6e-22 110.5 249 35.3
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 1.6e-19 101.3 57 87.7
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 6.6e-18 95.9 98 53.1
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 1.4e-15 88.2 45 88.9
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 9.2e-12 75.5 78 50.0
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 9.2e-12 75.5 55 65.5
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 2.1e-08 64.3 30 86.7
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.8e-07 61.2 54 64.8


User provided reference genes

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