Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 0.0e+00 1370.1 890 100.0
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 0.0e+00 1330.1 880 98.5
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 2.0e-249 866.3 924 67.9
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 2.2e-243 846.3 911 68.9
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 1.0e-240 837.4 908 65.3
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 1.8e-234 816.6 931 69.0
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 2.8e-230 802.7 904 63.6
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 9.3e-202 708.0 810 67.4
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 1.9e-191 673.7 931 59.3
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 2.9e-187 659.8 916 53.4
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 4.6e-185 652.5 760 67.5
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 8.2e-182 641.7 757 67.8
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 1.0e-176 624.8 908 54.5
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.2e-172 611.3 923 54.5
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 3.4e-172 609.8 941 54.2
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 1.3e-171 607.8 933 53.8
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 1.1e-170 604.7 669 55.8
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 6.1e-169 599.0 916 51.4
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.3e-168 597.0 721 52.1
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 2.4e-165 587.0 706 52.7
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 9.1e-165 585.1 710 52.7
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 7.2e-162 575.5 957 52.1
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 6.1e-161 572.4 701 51.1
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 2.3e-160 570.5 924 54.0
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 4.5e-156 556.2 721 49.5
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.9e-154 550.8 719 49.7
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 1.1e-151 541.6 735 47.6
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 2.0e-151 540.8 925 50.1
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 4.8e-150 536.2 978 45.9
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 5.3e-149 532.7 734 64.6
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 1.5e-146 524.6 669 50.4
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 4.0e-144 516.5 709 47.5
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 1.5e-143 514.6 732 62.4
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 2.8e-142 510.4 586 56.0
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 5.3e-141 506.1 657 50.4
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 7.7e-140 502.3 736 45.9
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.7e-139 501.1 745 45.9
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 6.5e-139 499.2 733 46.5
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 1.6e-137 494.6 528 55.5
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 1.0e-136 491.9 687 48.3
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 1.0e-136 491.9 758 46.6
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 4.0e-136 490.0 682 49.0
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.5e-135 488.0 686 47.4
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 3.4e-135 486.9 701 47.4
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 6.3e-134 482.6 729 45.8
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 7.0e-133 479.2 783 43.8
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 4.5e-132 476.5 775 56.6
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 1.1e-130 471.9 707 46.4
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 1.9e-130 471.1 667 46.3
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 2.1e-129 467.6 721 45.2
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 1.4e-128 464.9 787 53.9
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 1.2e-127 461.8 588 53.2
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 4.9e-126 456.4 774 57.8
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 2.4e-125 454.1 705 44.3
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 1.2e-124 451.8 783 53.0
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 2.0e-124 451.1 937 48.6
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 4.5e-124 449.9 555 53.0
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 1.0e-123 448.7 672 47.2
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 2.3e-123 447.6 667 47.4
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 5.0e-123 446.4 946 46.6
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 1.9e-122 444.5 711 43.7
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 7.3e-122 442.6 709 43.2
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 9.5e-122 442.2 757 51.9
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 1.2e-121 441.8 672 46.9
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 1.6e-121 441.4 955 45.5
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 4.7e-121 439.9 727 43.1
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 6.1e-121 439.5 703 45.5
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 5.8e-119 433.0 521 53.0
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 1.7e-118 431.4 740 43.2
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 1.4e-117 428.3 696 43.4
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.4e-117 428.3 766 42.7
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 5.4e-117 426.4 668 44.8
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 2.7e-116 424.1 842 47.5
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 4.7e-113 413.3 702 43.3
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 2.0e-111 407.9 709 42.2
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 2.6e-111 407.5 733 42.3
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 2.6e-111 407.5 583 48.0
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 8.3e-110 402.5 511 52.3
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 1.9e-109 401.4 743 40.1
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 6.0e-108 396.4 513 50.1
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 3.3e-106 390.6 643 44.2
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 3.3e-106 390.6 729 53.4
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 3.7e-102 377.1 590 44.6
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 1.3e-99 368.6 733 38.9
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 1.2e-97 362.1 580 45.3
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 3.6e-97 360.5 750 39.6
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 4.6e-92 343.6 729 38.8
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 4.8e-81 307.0 570 40.7
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 1.5e-79 302.0 326 57.4
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 4.2e-77 293.9 347 51.9
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 5.4e-77 293.5 754 32.5
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 9.3e-77 292.7 786 32.6
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 7.4e-74 283.1 560 39.6
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 2.1e-73 281.6 354 49.7
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 6.4e-70 270.0 372 48.9
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 2.4e-69 268.1 568 39.4
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 6.5e-62 243.4 456 39.3
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 9.7e-58 229.6 518 39.4
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 2.4e-56 224.9 438 40.0
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 1.2e-55 222.6 724 31.2
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 6.5e-54 216.9 550 33.8
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 3.8e-46 191.0 523 34.0
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 3.9e-35 154.5 138 59.4
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 6.7e-35 153.7 146 59.6
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 8.8e-35 153.3 140 58.6
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 7.4e-34 150.2 148 57.4
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 1.8e-32 145.6 146 56.2
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 1.6e-31 142.5 145 53.8
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 5.9e-31 140.6 148 52.0
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 7.7e-31 140.2 131 61.1
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 1.5e-29 136.0 143 53.1
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 2.4e-24 118.6 145 48.3
VMungo0251G0907 Vigna mungo HOM05D001291 ORTHO05D008027 1.9e-21 109.0 162 45.7
Cre11.g481700 Chlamydomonas reinhardtii HOM05D006512 ORTHO05D008027 6.8e-11 73.9 68 51.5
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 7.5e-10 70.5 79 49.4
Cpa.g.c37452 Carica papaya HOM05D006512 ORTHO05D008027 2.3e-06 58.9 67 56.7
C02p33950 Brassica napus HOM05D014849 ORTHO05D016773 5.0e-06 57.8 56 60.7
BolC2t09315H Brassica oleracea HOM05D014849 ORTHO05D016773 5.0e-06 57.8 56 60.7


User provided reference genes

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