Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.DL1CJS Arachis hypogaea HOM05D006430 ORTHO05D007585 1.8e-164 582.8 361 100.0
arahy.Tifrunner.gnm1.ann1.NYPU2B Arachis hypogaea HOM05D006430 ORTHO05D007585 3.3e-113 412.5 294 94.2
Phvul.002G268300 Phaseolus vulgaris HOM05D006430 ORTHO05D007585 3.5e-99 365.9 289 86.5
VMungo0251G0154 Vigna mungo HOM05D006430 ORTHO05D007585 4.6e-99 365.5 289 85.8
Medtr8g092620 Medicago truncatula HOM05D006430 ORTHO05D007585 1.2e-96 357.5 338 74.9
Ca_17667_v3 Cicer arietinum L. HOM05D006430 ORTHO05D007585 3.6e-96 355.9 289 84.4
Glyma.08G145700 Glycine max HOM05D006430 ORTHO05D007585 1.8e-95 353.6 289 86.9
Haze_25101 Corylus avellana HOM05D006430 ORTHO05D007585 2.0e-94 350.1 298 80.5
Lj4g0013268 Lotus japonicus HOM05D006430 ORTHO05D007585 2.6e-94 349.7 289 84.1
TPR.G2201 Trifolium pratense HOM05D006430 ORTHO05D007585 2.6e-94 349.7 289 84.4
Psat7g048920 Pisum sativum HOM05D006430 ORTHO05D007585 7.6e-94 348.2 289 83.7
Cfa002800 Carpinus fangiana HOM05D006430 ORTHO05D007585 1.7e-93 347.1 289 81.7
CANSAT01G2305 Cannabis sativa HOM05D006430 ORTHO05D007585 2.2e-93 346.7 289 84.4
Lalb_Chr12g0203371 Lupinus albus HOM05D006430 ORTHO05D007585 2.2e-93 346.7 289 87.5
arahy.Tifrunner.gnm1.ann1.H2AKZ1 Arachis hypogaea HOM05D006430 ORTHO05D007585 3.8e-93 345.9 289 85.8
Cpa.g.sc72.36 Carica papaya HOM05D006430 ORTHO05D007585 6.4e-93 345.1 291 82.8
MELO3C008023.2 Cucumis melo HOM05D006430 ORTHO05D007585 6.4e-93 345.1 289 82.7
Ciclev10026172m.g Citrus clementina HOM05D006430 ORTHO05D007585 1.4e-92 344.0 289 82.7
Thecc.01G118500 Theobroma cacao HOM05D006430 ORTHO05D007585 1.4e-92 344.0 289 82.7
Sabra16G0192700 Salix brachista HOM05D006430 ORTHO05D007585 1.9e-92 343.6 287 84.0
CsaV3_6G042010 Cucumis sativus L. HOM05D006430 ORTHO05D007585 5.4e-92 342.0 289 82.4
Manes.12G148000 Manihot esculenta HOM05D006430 ORTHO05D007585 5.4e-92 342.0 289 82.4
CiPaw.03G130500 Carya illinoinensis HOM05D006430 ORTHO05D007585 9.2e-92 341.3 290 81.4
Hma1.2p1_0253F.1_g102940 Hydrangea macrophylla HOM05D006430 ORTHO05D007585 1.2e-91 340.9 289 82.0
Potri.001G306500 Populus trichocarpa HOM05D006430 ORTHO05D007585 1.2e-91 340.9 287 82.6
Oeu015836.1 Olea europaea HOM05D006430 ORTHO05D007585 2.1e-91 340.1 289 79.9
Gohir.A08G035600 Gossypium hirsutum HOM05D006430 ORTHO05D007585 3.5e-91 339.3 289 81.7
TWI79G0409 Tripterygium wilfordii HOM05D006430 ORTHO05D007585 3.5e-91 339.3 289 79.6
Duzib187G0475 Durio zibethinus HOM05D006430 ORTHO05D007585 6.0e-91 338.6 289 80.3
GSVIVG01016788001 Vitis vinifera HOM05D006430 ORTHO05D007585 7.8e-91 338.2 289 79.9
Dinv02715 Davidia involucrata HOM05D006430 ORTHO05D007585 1.0e-90 337.8 286 81.5
Glyma.05G187400 Glycine max HOM05D006430 ORTHO05D007585 1.3e-90 337.4 290 86.2
Gohir.D08G046300 Gossypium hirsutum HOM05D006430 ORTHO05D007585 1.7e-90 337.0 289 81.3
Gorai.004G045500 Gossypium raimondii HOM05D006430 ORTHO05D007585 1.7e-90 337.0 289 81.3
QL08p047156 Quercus lobata HOM05D006430 ORTHO05D007585 1.7e-90 337.0 289 82.4
Migut.L00052 Erythranthe guttata HOM05D006430 ORTHO05D007585 3.0e-90 336.3 289 78.9
Eucgr.H04894 Eucalyptus grandis HOM05D006430 ORTHO05D007585 3.0e-90 336.3 289 80.6
Actinidia09815 Actinidia chinensis HOM05D006430 ORTHO05D007585 6.6e-90 335.1 289 80.6
RcHm_v2.0_Chr2g0119831 Rosa chinensis HOM05D006430 ORTHO05D007585 6.6e-90 335.1 289 81.7
RcHm_v2.0_Chr6g0259141 Rosa chinensis HOM05D006430 ORTHO05D007585 6.6e-90 335.1 289 81.7
COL.COLO4_22379 Corchorus olitorius HOM05D006430 ORTHO05D007585 1.1e-89 334.3 289 82.7
Prupe.6G161500 Prunus persica HOM05D006430 ORTHO05D007585 1.5e-89 334.0 289 80.3
SGA_v2.0_scaffold47G17683 Striga asiatica HOM05D006430 ORTHO05D007585 1.5e-89 334.0 289 77.9
Sed0026374 Sechium edule HOM05D006430 ORTHO05D007585 2.5e-89 333.2 289 81.7
Atru.chr4.619 Acer truncatum HOM05D006430 ORTHO05D007585 4.3e-89 332.4 289 81.0
TAR628G1086 Trochodendron aralioides HOM05D006430 ORTHO05D007585 4.3e-89 332.4 289 81.0
Ah.03g140160 Amaranthus hybridus HOM05D006430 ORTHO05D007585 5.6e-89 332.0 286 79.7
MSTRG.3821 Avicennia marina HOM05D006430 ORTHO05D007585 5.6e-89 332.0 289 77.5
AUR62003640 Chenopodium quinoa HOM05D006430 ORTHO05D007585 5.6e-89 332.0 289 80.6
Hund19623 Selenicereus undatus HOM05D006430 ORTHO05D007585 5.6e-89 332.0 330 73.0
EL10Ac6g15234 Beta vulgaris HOM05D006430 ORTHO05D007585 7.3e-89 331.6 289 80.3
FvH4_1g23870 Fragaria vesca HOM05D006430 ORTHO05D007585 1.2e-88 330.9 289 80.6
FAN26G1413 Fragaria x ananassa HOM05D006430 ORTHO05D007585 1.2e-88 330.9 289 79.6
RcHm_v2.0_Chr2g0119791 Rosa chinensis HOM05D006430 ORTHO05D007585 1.2e-88 330.9 289 60.9
Cc07_g16870 Coffea canephora HOM05D006430 ORTHO05D007585 1.6e-88 330.5 286 78.7
HanXRQChr07g0201191 Helianthus annuus HOM05D006430 ORTHO05D007585 2.1e-88 330.1 289 80.6
FAN19G1422 Fragaria x ananassa HOM05D006430 ORTHO05D007585 2.8e-88 329.7 286 81.1
AUR62017950 Chenopodium quinoa HOM05D006430 ORTHO05D007585 3.6e-88 329.3 289 80.3
ECA238G4454 Erigeron canadensis HOM05D006430 ORTHO05D007585 8.1e-88 328.2 289 77.2
Sc03g0004640 Simmondsia chinensis HOM05D006430 ORTHO05D007585 1.1e-87 327.8 289 79.9
CSS0010804 Camellia sinensis var. sinensis HOM05D006430 ORTHO05D007585 1.8e-87 327.0 284 80.6
CDE08G0124 Ceratophyllum demersum HOM05D006430 ORTHO05D007585 1.8e-87 327.0 285 80.4
PSO675G2196 Papaver somniferum HOM05D006430 ORTHO05D007585 1.8e-87 327.0 289 79.9
FAN28G2007 Fragaria x ananassa HOM05D006430 ORTHO05D007585 4.0e-87 325.9 306 76.5
DCAR_011471 Daucus carota HOM05D006430 ORTHO05D007585 1.2e-86 324.3 284 80.3
Lsat_1_v5_gn_2_116520 Lactuca sativa HOM05D006430 ORTHO05D007585 1.5e-86 323.9 289 79.2
unitig_37.g12838 Utricularia gibba HOM05D006430 ORTHO05D007585 1.5e-86 323.9 286 77.3
ATR0311G002 Amborella trichopoda HOM05D006430 ORTHO05D007585 3.4e-86 322.8 289 76.5
FAN05G3385 Fragaria x ananassa HOM05D006430 ORTHO05D007585 3.4e-86 322.8 289 59.2
Aqoxy6G00390 Aquilegia oxysepala HOM05D006430 ORTHO05D007585 7.6e-86 321.6 284 79.2
THA.LOC104799376 Tarenaya hassleriana HOM05D006430 ORTHO05D007585 1.7e-85 320.5 285 80.0
Aa31LG1G17180 Aethionema arabicum HOM05D006430 ORTHO05D007585 6.4e-85 318.5 309 72.5
HPP92_016153 Vanilla planifolia HOM05D006430 ORTHO05D007585 8.4e-85 318.2 288 80.6
MBI09_g02046_MAGBIO Magnolia biondii HOM05D006430 ORTHO05D007585 1.4e-84 317.4 286 67.8
Nitab4.5_0001582g0080 Nicotiana tabacum HOM05D006430 ORTHO05D007585 2.4e-84 316.6 289 76.5
vmacro18651 Vaccinium macrocarpon HOM05D006430 ORTHO05D007585 4.2e-84 315.8 287 78.4
Peaxi162Scf00025g02621 Petunia axillaris HOM05D006430 ORTHO05D007585 9.3e-84 314.7 289 75.1
Rhsim08G0004200 Rhododendron simsii HOM05D006430 ORTHO05D007585 9.3e-84 314.7 287 78.7
Sp2g27800 Schrenkiella parvula HOM05D006430 ORTHO05D007585 9.3e-84 314.7 285 77.2
Solyc11g005550.2 Solanum lycopersicum HOM05D006430 ORTHO05D007585 1.6e-83 313.9 289 75.1
BcaB02g09817 Brassica carinata HOM05D006430 ORTHO05D007585 2.1e-83 313.5 285 76.5
BcaC01g02704 Brassica carinata HOM05D006430 ORTHO05D007585 2.1e-83 313.5 285 76.5
A06p31510 Brassica napus HOM05D006430 ORTHO05D007585 2.1e-83 313.5 285 76.5
C03p61450 Brassica napus HOM05D006430 ORTHO05D007585 2.1e-83 313.5 285 76.5
BolC3t18404H Brassica oleracea HOM05D006430 ORTHO05D007585 2.1e-83 313.5 285 76.5
Sopen11g001520 Solanum pennellii HOM05D006430 ORTHO05D007585 2.1e-83 313.5 289 75.4
AT5G64730 Arabidopsis thaliana HOM05D006430 ORTHO05D007585 2.7e-83 313.2 289 75.1
Nitab4.5_0002138g0060 Nicotiana tabacum HOM05D006430 ORTHO05D007585 3.5e-83 312.8 289 75.8
BraA06t26090Z Brassica rapa HOM05D006430 ORTHO05D007585 4.6e-83 312.4 285 76.1
Carub.0008s2554 Capsella rubella HOM05D006430 ORTHO05D007585 7.8e-83 311.6 285 76.5
PGSC0003DMG400003975 Solanum tuberosum HOM05D006430 ORTHO05D007585 7.8e-83 311.6 289 74.7
AL8G42180 Arabidopsis lyrata HOM05D006430 ORTHO05D007585 1.3e-82 310.8 285 75.8
CARHR278720 Cardamine hirsuta HOM05D006430 ORTHO05D007585 1.3e-82 310.8 285 76.1
Thhalv10004678m.g Eutrema salsugineum HOM05D006430 ORTHO05D007585 1.1e-81 307.8 285 75.4
Manes.12G148300 Manihot esculenta HOM05D006430 ORTHO05D007585 3.6e-80 302.8 271 68.6
Mapoly0011s0172 Marchantia polymorpha HOM05D006430 ORTHO05D007585 6.2e-72 275.4 287 72.1
Lj2C583G2 Lonicera japonica HOM05D000121 ORTHO05D000102 6.0e-67 258.8 290 71.4
PGR102G2076 Punica granatum HOM05D006430 ORTHO05D007585 6.7e-66 255.4 159 79.2
Pp3c23_12950 Physcomitrium patens HOM05D006430 ORTHO05D007585 1.9e-65 253.8 284 70.8
Zm00001eb181820 Zea mays HOM05D006430 ORTHO05D007585 4.8e-64 249.2 286 69.6
Lj2A575G41 Lonicera japonica HOM05D006430 ORTHO05D007585 2.1e-59 233.8 290 57.6
SMO361G0710 Selaginella moellendorffii HOM05D006430 ORTHO05D007585 3.5e-59 233.0 286 60.5
Os02g0543400 Oryza sativa ssp. japonica HOM05D006430 ORTHO05D007585 6.5e-53 212.2 284 63.0
CBR_g30933 Chara braunii HOM05D006430 ORTHO05D007585 3.6e-43 179.9 241 67.6
MCO04G315 Micromonas commoda HOM05D006430 ORTHO05D007585 3.1e-39 166.8 283 53.4
AagrBONN_evm.TU.Sc2ySwM_228.1007 Anthoceros agrestis HOM05D006430 ORTHO05D007585 1.5e-38 164.5 225 71.6
PRCOL_00003041 Prasinoderma coloniale HOM05D006430 ORTHO05D007585 1.7e-37 161.0 286 51.7
CiPaw.09G145300 Carya illinoinensis HOM05D006430 ORTHO05D007585 2.2e-37 160.6 112 72.3
Cre16.g675301 Chlamydomonas reinhardtii HOM05D006430 ORTHO05D007585 4.2e-36 156.4 287 50.9
CiPaw.15G162200 Carya illinoinensis HOM05D006430 ORTHO05D007585 2.4e-31 140.6 135 58.5
MD15G1340800 Malus domestica HOM05D006430 ORTHO05D007585 2.7e-27 127.1 139 54.0
Hma1.2p1_0253F.1_g102950 Hydrangea macrophylla HOM05D006430 ORTHO05D007585 1.0e-26 125.2 60 91.7
FvH4_6g20551 Fragaria vesca HOM05D006430 ORTHO05D007585 1.8e-26 124.4 60 90.0
SHI11515 Sapria himalayana HOM05D000105 ORTHO05D000023 7.5e-25 119.0 60 85.0
SEGI_20850 Sequoiadendron giganteum HOM05D006430 ORTHO05D007585 4.5e-22 109.8 54 87.0
Peaxi162Scf01159g00015 Petunia axillaris HOM05D006430 ORTHO05D007585 1.5e-17 94.7 59 67.8
Lsat_1_v5_gn_7_93000 Lactuca sativa HOM05D006430 ORTHO05D007585 1.3e-13 81.6 58 69.0
Lsat_1_v5_gn_8_143080 Lactuca sativa HOM05D006430 ORTHO05D007585 1.7e-13 81.3 82 57.3
Lsat_1_v5_gn_2_95121 Lactuca sativa HOM05D000015 ORTHO05D007585 1.1e-12 78.6 45 82.2
Lsat_1_v5_gn_4_159620 Lactuca sativa HOM05D000911 ORTHO05D007585 1.5e-12 78.2 47 78.7
BcaB02g09845 Brassica carinata HOM05D006430 ORTHO05D007585 1.6e-11 74.7 59 59.3
Lsat_1_v5_gn_9_87941 Lactuca sativa HOM05D006430 ORTHO05D007585 3.6e-11 73.6 46 73.9
AL4G16230 Arabidopsis lyrata HOM05D006430 ORTHO05D007585 3.0e-10 70.5 40 82.5
AL6G50270 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 1.5e-09 68.2 96 36.5
Carub.0006s3437 Capsella rubella HOM05D002943 ORTHO05D002685 1.5e-09 68.2 96 36.5
CARHR251070 Cardamine hirsuta HOM05D002943 ORTHO05D002685 1.5e-09 68.2 96 36.5
AT4G02730 Arabidopsis thaliana HOM05D002943 ORTHO05D002685 2.0e-09 67.8 117 33.3
Thhalv10028762m.g Eutrema salsugineum HOM05D002943 ORTHO05D002685 2.0e-09 67.8 96 36.5
BcaB05g23663 Brassica carinata HOM05D002943 ORTHO05D002685 2.6e-09 67.4 96 35.4
Sp6g02690 Schrenkiella parvula HOM05D002943 ORTHO05D002685 3.4e-09 67.0 96 36.5
CDE02G1640 Ceratophyllum demersum HOM05D005494 ORTHO05D006689 4.4e-09 66.6 37 78.4
Lsat_1_v5_gn_4_28161 Lactuca sativa HOM05D002943 ORTHO05D002685 3.7e-08 63.5 89 34.8
RcHm_v2.0_Chr6g0290821 Rosa chinensis HOM05D002943 ORTHO05D002685 4.9e-08 63.2 94 37.2
GSVIVG01001162001 Vitis vinifera HOM05D002943 ORTHO05D002685 8.3e-08 62.4 132 30.3
Lj5g0020766 Lotus japonicus HOM05D002943 ORTHO05D002685 1.1e-07 62.0 102 32.4
Os07g0572000 Oryza sativa ssp. japonica HOM05D002943 ORTHO05D002685 1.1e-07 62.0 181 25.4
CANSAT56G2303 Cannabis sativa HOM05D002943 ORTHO05D002685 1.4e-07 61.6 94 36.2
Cc03_g10690 Coffea canephora HOM05D002943 ORTHO05D002685 1.4e-07 61.6 138 29.7
QL12p021366 Quercus lobata HOM05D002943 ORTHO05D002685 1.8e-07 61.2 96 34.4
MBI04_g36449_MAGBIO Magnolia biondii HOM05D002943 ORTHO05D002685 2.4e-07 60.8 100 34.0
AagrBONN_evm.TU.Sc2ySwM_292.2 Anthoceros agrestis HOM05D002943 ORTHO05D002685 7.0e-07 59.3 91 36.3
Cfa006157 Carpinus fangiana HOM05D002943 ORTHO05D002685 7.0e-07 59.3 96 34.4
Zm00001eb325000 Zea mays HOM05D002943 ORTHO05D002685 7.0e-07 59.3 84 32.1
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 9.2e-07 58.9 136 29.4
Medtr1g072140 Medicago truncatula HOM05D002943 ORTHO05D002685 9.2e-07 58.9 96 33.3
Haze_04694 Corylus avellana HOM05D002943 ORTHO05D002685 1.2e-06 58.5 96 34.4
MD03G1263200 Malus domestica HOM05D002943 ORTHO05D002685 1.2e-06 58.5 98 32.7
PRCOL_00005022 Prasinoderma coloniale HOM05D001610 ORTHO05D002685 1.6e-06 58.2 90 30.0
Lalb_Chr12g0202001 Lupinus albus HOM05D000464 ORTHO05D006292 2.7e-06 57.4 136 31.6
Rhsim12G0170400 Rhododendron simsii HOM05D000464 ORTHO05D006292 2.7e-06 57.4 134 32.1
Glyma.02G146800 Glycine max HOM05D002943 ORTHO05D002685 3.5e-06 57.0 96 32.3
Phvul.007G172600 Phaseolus vulgaris HOM05D002943 ORTHO05D002685 3.5e-06 57.0 96 32.3
VMungo0720G0375 Vigna mungo HOM05D002943 ORTHO05D002685 3.5e-06 57.0 96 32.3
CDE06G2114 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 4.5e-06 56.6 149 28.2
Sed0026548 Sechium edule HOM05D002943 ORTHO05D002685 4.5e-06 56.6 90 32.2
ClCG09G007120 Citrullus lanatus HOM05D002943 ORTHO05D002685 5.9e-06 56.2 90 32.2
SalBow5G5416 Salvia bowleyana HOM05D006430 ORTHO05D007585 5.9e-06 56.2 31 80.6
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 7.8e-06 55.8 134 31.3
Psat6g060720 Pisum sativum HOM05D002943 ORTHO05D002685 7.8e-06 55.8 92 32.6
Prupe.8G239500 Prunus persica HOM05D002943 ORTHO05D002685 7.8e-06 55.8 94 33.0
VMungo1215G0985 Vigna mungo HOM05D000464 ORTHO05D006292 7.8e-06 55.8 135 31.1


User provided reference genes

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