Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 9.7e-89 330.1 165 100.0
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 1.2e-81 306.6 164 92.7
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 5.7e-81 304.3 164 92.1
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 4.1e-71 271.6 164 80.5
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 2.4e-63 245.7 147 81.6
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 1.6e-62 243.0 158 74.7
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 4.6e-62 241.5 164 72.0
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.9e-61 238.4 159 75.5
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 5.0e-61 238.0 159 73.6
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 5.0e-61 238.0 147 80.3
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 6.6e-61 237.7 152 75.7
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 8.6e-61 237.3 158 73.4
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.1e-60 236.9 159 74.8
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 1.9e-60 236.1 159 73.6
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 1.9e-60 236.1 142 78.9
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.5e-60 235.7 159 74.8
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 3.3e-60 235.3 147 76.2
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 4.3e-60 235.0 161 71.4
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 5.6e-60 234.6 141 78.7
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 7.3e-60 234.2 152 73.7
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 7.3e-60 234.2 148 75.7
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 9.5e-60 233.8 150 73.3
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 9.5e-60 233.8 141 78.0
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 1.2e-59 233.4 156 71.2
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.2e-59 233.4 150 75.3
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.2e-59 233.4 157 73.2
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.6e-59 233.0 154 72.7
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.6e-59 233.0 150 75.3
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.1e-59 232.6 152 74.3
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 2.1e-59 232.6 150 75.3
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 2.8e-59 232.3 162 73.5
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 2.8e-59 232.3 160 71.2
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 2.8e-59 232.3 159 71.7
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 3.6e-59 231.9 148 76.4
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 6.2e-59 231.1 140 77.1
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 6.2e-59 231.1 140 77.1
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 6.2e-59 231.1 140 77.1
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 6.2e-59 231.1 140 77.1
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 6.2e-59 231.1 140 77.1
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 6.2e-59 231.1 168 68.5
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 8.0e-59 230.7 161 70.2
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 1.0e-58 230.3 164 67.7
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 1.4e-58 229.9 145 75.9
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.4e-58 229.9 151 73.5
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 1.4e-58 229.9 154 72.7
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 2.3e-58 229.2 148 75.0
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 3.1e-58 228.8 140 76.4
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 3.1e-58 228.8 151 73.5
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 3.1e-58 228.8 159 73.0
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 3.1e-58 228.8 147 76.2
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 3.1e-58 228.8 165 68.5
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 4.0e-58 228.4 141 75.9
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 4.0e-58 228.4 162 71.6
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 4.0e-58 228.4 164 71.3
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 5.2e-58 228.0 151 71.5
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 6.8e-58 227.6 153 71.9
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 6.8e-58 227.6 143 74.1
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 8.9e-58 227.3 159 69.8
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 8.9e-58 227.3 151 72.2
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 1.2e-57 226.9 140 78.6
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 1.5e-57 226.5 159 71.1
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.5e-57 226.5 159 69.8
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 1.5e-57 226.5 147 76.2
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.5e-57 226.5 141 78.0
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 2.0e-57 226.1 158 70.9
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.0e-57 226.1 138 76.8
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.0e-57 226.1 159 69.8
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.0e-57 226.1 150 71.3
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.0e-57 226.1 141 77.3
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 2.6e-57 225.7 152 71.1
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 2.6e-57 225.7 164 68.3
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.6e-57 225.7 155 69.7
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 2.6e-57 225.7 142 77.5
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 2.6e-57 225.7 151 71.5
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 3.4e-57 225.3 143 74.1
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 5.8e-57 224.6 158 70.9
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 7.5e-57 224.2 159 68.6
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 1.3e-56 223.4 158 70.3
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.3e-56 223.4 158 70.3
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 1.3e-56 223.4 158 70.3
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 1.3e-56 223.4 138 76.8
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.3e-56 223.4 146 73.3
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.9e-56 222.2 150 71.3
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 3.7e-56 221.9 144 72.2
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 4.9e-56 221.5 158 70.9
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 6.4e-56 221.1 145 73.1
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.1e-55 220.3 140 74.3
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.1e-55 220.3 147 71.4
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 1.4e-55 219.9 158 70.3
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.4e-55 219.9 138 75.4
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 1.9e-55 219.5 138 74.6
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 3.2e-55 218.8 142 72.5
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 4.1e-55 218.4 140 72.9
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 9.2e-55 217.2 138 74.6
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 1.2e-54 216.9 141 72.3
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.2e-54 216.9 141 72.3
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-54 216.5 141 72.3
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-54 216.5 141 72.3
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-54 216.5 141 72.3
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 4.6e-54 214.9 138 73.2
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 4.6e-54 214.9 173 65.9
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 6.0e-54 214.5 151 69.5
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.0e-54 214.5 141 71.6
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 2.3e-53 212.6 152 68.4
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 6.6e-53 211.1 159 66.0
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.1e-52 210.3 177 61.6
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 3.3e-52 208.8 141 70.2
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 4.3e-52 208.4 161 65.8
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 5.6e-52 208.0 203 55.2
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.1e-51 206.1 194 56.2
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 8.1e-51 204.1 143 67.1
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 8.1e-51 204.1 142 69.7
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 5.8e-49 198.0 141 65.2
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 9.8e-49 197.2 151 63.6
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.4e-47 192.6 138 68.1
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 2.4e-47 192.6 138 65.2
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 7.8e-46 187.6 112 76.8
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 1.3e-45 186.8 138 63.0
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.0e-45 185.7 139 61.9
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 6.6e-45 184.5 140 64.3
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 6.6e-45 184.5 121 75.2
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 3.3e-44 182.2 138 61.6
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 3.3e-44 182.2 138 61.6
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.3e-44 182.2 127 66.9
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 4.3e-44 181.8 141 60.3
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.4e-42 176.8 136 61.8
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-42 176.4 179 52.0
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 1.5e-41 173.3 100 80.0
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.7e-40 169.9 100 79.0
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 6.4e-40 167.9 100 80.0
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.4e-39 166.8 172 49.4
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 5.4e-39 164.9 141 60.3
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 7.1e-39 164.5 160 51.2
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.2e-38 163.7 116 63.8
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 6.0e-38 161.4 118 62.7
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.0e-37 160.6 151 54.3
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.1e-36 157.1 118 61.9
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.3e-36 155.6 138 58.0
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.8e-34 149.8 100 69.0
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 7.1e-31 137.9 85 74.1
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 2.8e-27 125.9 73 82.2
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.2e-25 120.6 155 44.5
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.5e-25 120.2 176 40.3
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.6e-25 119.4 72 72.2
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 3.4e-25 119.0 72 75.0
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 1.6e-19 100.1 59 76.3
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.8e-18 96.7 86 57.0
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 4.0e-18 95.5 140 41.4
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 5.3e-18 95.1 68 70.6
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.3e-16 90.5 113 43.4
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 2.9e-16 89.4 56 71.4
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 1.9e-15 86.7 81 56.8
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.2e-15 85.9 61 63.9
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 3.9e-13 79.0 81 42.0
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 6.7e-13 78.2 52 71.2
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-10 70.9 47 78.7


User provided reference genes

Program Settings