Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CC2P36 Arachis hypogaea HOM05D001415 ORTHO05D001075 1.1e-26 122.5 60 100.0
Glyma.20G182200 Glycine max HOM05D001415 ORTHO05D001075 4.3e-10 67.4 47 66.0
Glyma.10G208500 Glycine max HOM05D001415 ORTHO05D001075 1.2e-09 65.9 52 55.8
Phvul.007G098500 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.2e-09 65.9 50 58.0
Lalb_Chr02g0152101 Lupinus albus HOM05D001415 ORTHO05D001075 4.7e-09 63.9 51 58.8
COL.COLO4_17147 Corchorus olitorius HOM05D001415 ORTHO05D001075 6.2e-09 63.5 41 65.9
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 6.2e-09 63.5 49 67.3
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 8.1e-09 63.2 51 58.8
CiPaw.02G172500 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.1e-08 62.8 48 58.3
Gohir.A05G293900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-08 62.8 41 65.9
Gohir.D05G294600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-08 62.8 41 65.9
Gorai.009G311300 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.1e-08 62.8 41 65.9
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.4e-08 62.4 49 65.3
Glyma.10G208400 Glycine max HOM05D001415 ORTHO05D001075 1.8e-08 62.0 50 56.0
Glyma.20G182300 Glycine max HOM05D001415 ORTHO05D001075 1.8e-08 62.0 50 56.0
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.8e-08 62.0 39 69.2
Phvul.007G098400 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.8e-08 62.0 52 55.8
Manes.07G133164 Manihot esculenta HOM05D001415 ORTHO05D001075 3.1e-08 61.2 39 64.1
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 3.1e-08 61.2 39 71.8
CiPaw.01G269600 Carya illinoinensis HOM05D001415 ORTHO05D001075 8.9e-08 59.7 39 66.7
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 8.9e-08 59.7 36 75.0
CiPaw.10G130800 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.2e-07 59.3 41 58.5
Lj5g0008582 Lotus japonicus HOM05D001415 ORTHO05D001075 1.2e-07 59.3 35 68.6
Phvul.007G235700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.2e-07 59.3 39 61.5
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 2.0e-07 58.5 39 64.1
Duzib128G1683 Durio zibethinus HOM05D001415 ORTHO05D001075 3.4e-07 57.8 41 56.1
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 3.4e-07 57.8 36 72.2
CANSAT56G2970 Cannabis sativa HOM05D001415 ORTHO05D001075 4.4e-07 57.4 51 56.9
COL.COLO4_26977 Corchorus olitorius HOM05D001415 ORTHO05D001075 4.4e-07 57.4 39 59.0
Manes.09G067380 Manihot esculenta HOM05D001415 ORTHO05D001075 4.4e-07 57.4 41 56.1
Manes.10G049900 Manihot esculenta HOM05D001415 ORTHO05D001075 5.8e-07 57.0 41 53.7
CSS0026842 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 9.9e-07 56.2 51 52.9
Potri.006G125600 Populus trichocarpa HOM05D001415 ORTHO05D001075 9.9e-07 56.2 47 48.9
Migut.F01961 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.3e-06 55.8 33 72.7
RcHm_v2.0_Chr3g0470051 Rosa chinensis HOM05D001415 ORTHO05D001075 1.3e-06 55.8 45 55.6
FAN05G3971 Fragaria x ananassa HOM05D001415 ORTHO05D001075 1.7e-06 55.5 37 59.5
FAN14G2263 Fragaria x ananassa HOM05D001415 ORTHO05D001075 1.7e-06 55.5 37 59.5
Manes.08G009400 Manihot esculenta HOM05D001415 ORTHO05D001075 2.2e-06 55.1 49 49.0
CANSAT80G1980 Cannabis sativa HOM05D001415 ORTHO05D001075 2.9e-06 54.7 39 53.8
Glyma.10G122700 Glycine max HOM05D001415 ORTHO05D001075 2.9e-06 54.7 34 67.6
BcaB01g03804 Brassica carinata HOM05D001415 ORTHO05D001075 3.7e-06 54.3 37 56.8
BcaC01g05622 Brassica carinata HOM05D001415 ORTHO05D001075 3.7e-06 54.3 37 56.8
A03p20360 Brassica napus HOM05D001415 ORTHO05D001075 3.7e-06 54.3 37 56.8
C03p23940 Brassica napus HOM05D001415 ORTHO05D001075 3.7e-06 54.3 37 56.8
BolC3t14783H Brassica oleracea HOM05D001415 ORTHO05D001075 3.7e-06 54.3 37 56.8
BraA03t11281Z Brassica rapa HOM05D001415 ORTHO05D001075 3.7e-06 54.3 37 56.8
CSS0013409 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 3.7e-06 54.3 32 68.8
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 3.7e-06 54.3 32 68.8
QL08p060355 Quercus lobata HOM05D001415 ORTHO05D001075 4.9e-06 53.9 32 68.8
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 4.9e-06 53.9 30 76.7
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 6.4e-06 53.5 30 73.3
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 6.4e-06 53.5 30 73.3
Glyma.13G143700 Glycine max HOM05D001415 ORTHO05D001075 6.4e-06 53.5 37 56.8
Gohir.A10G203600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.4e-06 53.5 52 50.0
Gohir.D10G211700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.4e-06 53.5 52 50.0
Gorai.011G237600 Gossypium raimondii HOM05D001415 ORTHO05D001075 6.4e-06 53.5 52 50.0
Lalb_Chr25g0289021 Lupinus albus HOM05D001415 ORTHO05D001075 6.4e-06 53.5 37 56.8
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 6.4e-06 53.5 32 68.8
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 6.4e-06 53.5 30 73.3
HPP92_012600 Vanilla planifolia HOM05D001415 ORTHO05D001075 6.4e-06 53.5 34 64.7
Atru.chr12.418 Acer truncatum HOM05D001415 ORTHO05D001075 8.4e-06 53.1 32 65.6
Aa31LG5G22210 Aethionema arabicum HOM05D001415 ORTHO05D001075 8.4e-06 53.1 49 51.0
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 8.4e-06 53.1 32 65.6
Glyma.10G057200 Glycine max HOM05D001415 ORTHO05D001075 8.4e-06 53.1 38 55.3
Lalb_Chr04g0251121 Lupinus albus HOM05D001415 ORTHO05D001075 8.4e-06 53.1 32 65.6
Potri.008G057800 Populus trichocarpa HOM05D001415 ORTHO05D001075 8.4e-06 53.1 32 65.6


User provided reference genes

Program Settings