Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.9e-286 988.4 477 100.0
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 3.9e-271 937.6 502 92.0
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 6.0e-264 913.7 478 91.4
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 6.8e-260 900.2 478 91.0
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 1.7e-258 895.6 478 90.0
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 1.5e-254 882.5 478 89.1
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 1.9e-254 882.1 478 88.3
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 5.6e-254 880.6 478 89.1
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 9.5e-254 879.8 479 88.7
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.1e-252 876.3 478 88.3
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 3.1e-252 874.8 458 91.5
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 2.3e-247 858.6 473 87.3
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 1.9e-246 855.5 473 86.9
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 3.6e-245 851.3 473 86.5
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 4.0e-244 847.8 478 84.5
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 1.5e-243 845.9 479 85.2
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.7e-242 842.4 481 85.0
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.7e-242 842.4 481 85.0
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 2.2e-242 842.0 473 85.4
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 3.8e-242 841.3 480 85.2
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 8.4e-242 840.1 478 82.6
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 1.4e-241 839.3 479 84.3
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 3.2e-241 838.2 478 82.8
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.2e-241 838.2 473 85.2
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 4.2e-241 837.8 478 82.4
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 5.4e-241 837.4 478 83.1
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 5.4e-241 837.4 478 82.2
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 5.4e-241 837.4 478 84.5
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 9.3e-241 836.6 478 84.5
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 2.1e-240 835.5 479 84.6
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 2.7e-240 835.1 477 84.5
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.7e-240 835.1 473 84.1
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 2.7e-240 835.1 480 84.0
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 2.7e-240 835.1 481 84.0
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 7.8e-240 833.6 479 83.3
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 7.8e-240 833.6 481 84.2
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.0e-239 833.2 473 84.6
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 1.0e-239 833.2 478 83.9
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 1.3e-239 832.8 480 83.1
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 3.0e-239 831.6 479 83.9
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 8.7e-239 830.1 486 81.7
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 8.7e-239 830.1 478 84.7
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 8.7e-239 830.1 480 83.8
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.1e-238 829.7 485 82.9
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 1.5e-238 829.3 478 83.5
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 1.9e-238 828.9 479 82.0
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 1.9e-238 828.9 479 82.0
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 1.9e-238 828.9 478 83.1
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 4.3e-238 827.8 478 82.2
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 4.3e-238 827.8 478 82.4
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 4.3e-238 827.8 478 81.8
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 7.3e-238 827.0 479 83.5
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 9.6e-238 826.6 478 83.3
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.6e-237 825.9 471 84.7
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.1e-237 825.5 482 82.8
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 2.8e-237 825.1 478 82.0
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 3.6e-237 824.7 478 82.6
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 4.8e-237 824.3 471 82.6
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 4.8e-237 824.3 480 82.3
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 1.8e-236 822.4 478 82.0
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.8e-236 822.4 479 83.5
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 2.4e-236 822.0 470 83.6
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 3.1e-236 821.6 486 82.5
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 5.3e-236 820.8 478 82.2
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 1.2e-235 819.7 479 82.7
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.5e-235 819.3 479 83.3
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 3.4e-235 818.1 481 82.5
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 5.8e-235 817.4 484 81.6
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 5.8e-235 817.4 486 81.7
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 1.3e-234 816.2 478 81.4
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 1.7e-234 815.8 478 81.0
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.7e-234 815.8 442 88.2
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 2.2e-234 815.5 473 83.1
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 2.9e-234 815.1 473 82.0
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 3.8e-234 814.7 473 82.2
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 8.4e-234 813.5 442 87.8
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 1.4e-233 812.8 479 82.5
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 1.9e-233 812.4 479 83.1
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 2.4e-233 812.0 452 85.6
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 3.2e-233 811.6 478 80.8
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 4.2e-233 811.2 474 83.5
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 1.2e-232 809.7 480 81.5
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.3e-231 806.2 473 82.9
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 1.7e-231 805.8 486 78.8
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 3.0e-231 805.1 479 80.6
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 3.9e-231 804.7 482 80.7
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 5.1e-231 804.3 479 80.2
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 1.6e-229 799.3 473 81.4
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 2.1e-229 798.9 471 82.2
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 7.6e-227 790.4 477 81.6
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 7.6e-227 790.4 471 81.3
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 7.6e-227 790.4 461 80.9
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 1.3e-226 789.6 476 80.9
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 2.2e-226 788.9 475 78.9
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 6.4e-226 787.3 494 77.1
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 8.4e-226 786.9 478 81.6
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 1.4e-225 786.2 456 81.4
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.4e-225 785.4 471 80.7
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 4.2e-225 784.6 472 80.9
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 7.1e-225 783.9 491 78.6
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 9.3e-217 756.9 473 77.2
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.6e-216 756.1 498 75.1
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 7.9e-216 753.8 476 78.2
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 4.1e-212 741.5 452 80.5
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 3.5e-208 728.4 506 73.1
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 4.3e-206 721.5 481 74.2
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 6.9e-204 714.1 470 71.3
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 7.7e-203 710.7 501 72.5
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 1.7e-197 693.0 472 71.2
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 4.5e-195 684.9 449 71.3
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 4.5e-195 684.9 471 69.0
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 1.8e-191 672.9 384 82.8
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 5.0e-186 654.8 461 71.6
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 1.9e-185 652.9 483 69.4
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.4e-174 615.5 365 78.9
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 3.5e-171 605.5 365 78.1
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 8.5e-170 600.9 455 67.5
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 3.6e-160 568.9 480 62.5
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 1.9e-153 546.6 281 94.0
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 4.7e-152 542.0 420 67.6
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 1.4e-151 540.4 275 94.2
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.1e-143 514.2 304 78.9
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 4.3e-137 492.3 304 77.0
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 8.9e-135 484.6 410 59.3
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 1.0e-130 471.1 445 52.6
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 1.0e-122 444.5 306 71.9
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 5.6e-121 438.7 308 69.8
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.9e-105 387.1 211 87.2
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.9e-101 373.2 255 71.4
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 6.5e-101 372.1 228 76.8
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 6.5e-101 372.1 228 76.8
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 9.6e-97 358.2 416 47.8
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 3.3e-89 333.2 200 80.5
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 1.3e-88 331.3 463 43.8
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 2.3e-82 310.5 172 84.3
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 1.1e-81 308.1 172 83.7
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 4.2e-76 289.7 427 42.2
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 1.2e-70 271.6 179 71.5
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 4.5e-70 269.6 147 83.0
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 7.7e-70 268.9 179 70.9
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 7.0e-47 192.6 99 84.8
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 7.0e-47 192.6 99 84.8
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 1.0e-45 188.7 111 79.3
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 6.6e-37 159.5 105 72.4
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 4.3e-36 156.8 95 82.1
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 4.3e-36 156.8 97 76.3
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 1.6e-30 138.3 77 81.8
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 6.2e-27 126.3 77 77.9
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 1.1e-26 125.6 80 72.5
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 1.1e-20 105.5 56 82.1
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 1.5e-20 105.1 136 41.2
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 7.3e-20 102.8 65 72.3
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 1.1e-15 89.0 73 67.1
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 4.1e-15 87.0 75 57.3
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 7.1e-15 86.3 45 84.4
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 2.1e-14 84.7 72 61.1
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.1e-14 84.7 72 61.1
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 1.1e-10 72.4 34 91.2
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 6.9e-10 69.7 38 86.8
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 3.8e-08 63.9 34 91.2
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 5.4e-07 60.1 64 54.7
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 2.7e-06 57.8 55 54.5
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 3.5e-06 57.4 55 50.9
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 3.5e-06 57.4 55 50.9


User provided reference genes

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