Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C6RLDL Arachis hypogaea HOM05D003177 ORTHO05D003481 2.6e-56 221.9 115 100.0
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 7.6e-48 193.7 110 90.9
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 9.9e-48 193.4 110 90.0
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 1.0e-36 156.8 108 71.3
Glyma.12G135500 Glycine max HOM05D003177 ORTHO05D003481 1.8e-36 156.0 108 72.2
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 1.1e-35 153.3 110 71.8
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 2.5e-35 152.1 108 71.3
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 2.1e-34 149.1 108 69.4
arahy.Tifrunner.gnm1.ann1.PSAJ1X Arachis hypogaea HOM05D003177 ORTHO05D003481 2.4e-33 145.6 92 80.4
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 7.6e-32 140.6 108 65.7
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 1.0e-31 140.2 108 65.7
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 1.0e-31 140.2 108 64.8
VMungo1127G0069 Vigna mungo HOM05D003177 ORTHO05D003481 4.9e-31 137.9 108 63.0
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 1.9e-30 136.0 108 63.9
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 1.6e-29 132.9 110 63.6
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 2.1e-29 132.5 114 61.4
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 3.5e-29 131.7 114 60.5
Lj1C863T22 Lonicera japonica HOM05D003177 ORTHO05D003481 1.0e-28 130.2 114 64.9
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 3.9e-28 128.3 110 59.1
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 1.1e-27 126.7 112 58.0
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 3.3e-27 125.2 113 57.5
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 3.3e-27 125.2 110 58.2
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 7.4e-27 124.0 114 58.8
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 7.4e-27 124.0 114 56.1
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 7.4e-27 124.0 114 57.0
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 1.3e-26 123.2 114 55.3
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 2.1e-26 122.5 110 60.9
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 2.8e-26 122.1 110 58.2
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 2.8e-26 122.1 110 59.1
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 3.7e-26 121.7 114 54.4
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 6.3e-26 120.9 114 55.3
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 6.3e-26 120.9 110 58.2
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 6.3e-26 120.9 110 58.2
Eucgr.G00523 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.4e-25 119.8 114 54.4
Ciclev10008545m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.8e-25 119.4 114 54.4
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 1.8e-25 119.4 108 56.5
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.1e-25 118.2 106 58.5
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.1e-25 118.2 106 58.5
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 4.1e-25 118.2 106 58.5
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 4.1e-25 118.2 114 53.5
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 5.3e-25 117.9 114 54.4
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 6.9e-25 117.5 110 53.6
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 9.0e-25 117.1 110 56.4
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 1.2e-24 116.7 110 57.3
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.5e-24 116.3 107 56.1
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 2.0e-24 115.9 110 54.5
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 2.0e-24 115.9 110 57.3
Glyma.13G287400 Glycine max HOM05D003177 ORTHO05D003481 3.4e-24 115.2 108 53.7
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 4.5e-24 114.8 114 51.8
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 4.5e-24 114.8 110 56.4
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 7.6e-24 114.0 110 54.5
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 1.0e-23 113.6 88 65.9
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 1.7e-23 112.8 114 50.9
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 2.2e-23 112.5 110 53.6
RcHm_v2.0_Chr5g0037561 Rosa chinensis HOM05D003177 ORTHO05D003481 2.2e-23 112.5 110 53.6
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.9e-23 112.1 110 52.7
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 5.0e-23 111.3 114 51.8
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.5e-23 110.9 110 52.7
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 6.5e-23 110.9 110 54.5
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 8.4e-23 110.5 110 51.8
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 8.4e-23 110.5 110 52.7
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 8.4e-23 110.5 110 51.8
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 1.1e-22 110.2 110 51.8
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 1.4e-22 109.8 115 52.2
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.2e-22 108.6 110 50.9
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 4.2e-22 108.2 110 50.9
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 5.5e-22 107.8 108 51.9
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 5.5e-22 107.8 108 51.9
Actinidia35317 Actinidia chinensis HOM05D003177 ORTHO05D003481 1.2e-21 106.7 110 50.0
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 1.2e-21 106.7 114 49.1
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.1e-21 105.9 111 52.3
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 2.1e-21 105.9 114 50.0
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 2.7e-21 105.5 103 55.3
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 4.6e-21 104.8 114 49.1
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 7.9e-21 104.0 94 58.5
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 1.3e-20 103.2 110 49.1
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 1.8e-20 102.8 114 48.2
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 2.3e-20 102.4 108 49.1
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.7e-20 100.9 125 46.4
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 1.9e-19 99.4 114 48.2
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 3.3e-19 98.6 110 50.9
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 3.3e-19 98.6 114 47.4
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 1.6e-18 96.3 109 51.4
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 2.2e-18 95.9 109 47.7
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 3.7e-18 95.1 114 45.6
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 4.8e-18 94.7 110 48.2
arahy.Tifrunner.gnm1.ann1.BRX1G6 Arachis hypogaea HOM05D003177 ORTHO05D003481 6.9e-17 90.9 66 72.7
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 1.5e-16 89.7 112 42.9
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 2.0e-16 89.4 110 48.2
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 3.4e-16 88.6 114 43.0
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 4.5e-16 88.2 111 45.9
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 4.5e-16 88.2 114 43.0
arahy.Tifrunner.gnm1.ann1.4630L6 Arachis hypogaea HOM05D003177 ORTHO05D003481 5.9e-16 87.8 114 51.8
arahy.Tifrunner.gnm1.ann1.P5VPT7 Arachis hypogaea HOM05D003177 ORTHO05D003481 5.9e-16 87.8 110 54.5
Hma1.2p1_1546F.1_g289990 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 7.7e-16 87.4 105 47.6
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 7.7e-16 87.4 110 42.7
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 7.7e-16 87.4 110 46.4
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 1.3e-15 86.7 110 45.5
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 6.5e-15 84.3 110 40.9
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 6.5e-15 84.3 99 50.5
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 6.5e-15 84.3 110 43.6
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 1.1e-14 83.6 110 38.2
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 1.1e-14 83.6 110 38.2
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 1.4e-14 83.2 99 50.5
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 2.5e-14 82.4 110 37.3
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 2.5e-14 82.4 110 36.4
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 2.5e-14 82.4 110 37.3
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 5.5e-14 81.3 110 38.2
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 7.2e-14 80.9 110 38.2
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 7.2e-14 80.9 95 43.2
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 1.2e-13 80.1 110 40.9
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.6e-13 79.7 110 38.2
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 2.1e-13 79.3 110 37.3
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 4.6e-13 78.2 110 38.2
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 6.1e-13 77.8 110 43.6
CsaV3_UNG229000 Cucumis sativus L. HOM05D003177 ORTHO05D003481 6.1e-13 77.8 110 43.6
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 7.9e-13 77.4 110 39.1
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 7.9e-13 77.4 110 38.2
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 3.9e-12 75.1 110 38.2
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 3.9e-12 75.1 114 41.2
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 5.1e-12 74.7 110 35.5
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 5.1e-12 74.7 110 35.5
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 5.1e-12 74.7 110 35.5
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 5.1e-12 74.7 78 47.4
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 6.7e-12 74.3 110 35.5
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 6.7e-12 74.3 110 35.5
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 6.7e-12 74.3 74 48.6
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 8.8e-12 73.9 110 36.4
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 1.5e-11 73.2 110 40.0
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 2.0e-11 72.8 108 37.0
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 2.0e-11 72.8 104 37.5
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 2.0e-11 72.8 111 39.6
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 3.3e-11 72.0 104 35.6
SEGI_25291 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 7.4e-11 70.9 112 37.5
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 1.1e-09 67.0 70 47.1
Medtr4g133410 Medicago truncatula HOM05D003177 ORTHO05D003481 1.5e-08 63.2 96 38.5
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 4.5e-08 61.6 110 32.7
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 2.9e-07 58.9 74 43.2
Medtr8g070020 Medicago truncatula HOM05D003177 ORTHO05D003481 2.9e-07 58.9 96 36.5


User provided reference genes

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