Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 8.5e-122 440.7 274 100.0
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 2.5e-33 146.7 77 92.2
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 1.1e-28 131.3 68 92.6
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 5.0e-21 105.9 77 68.8
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 1.4e-20 104.4 126 49.2
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 1.4e-18 97.8 93 55.9
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 2.3e-18 97.1 72 65.3
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 1.1e-17 94.7 67 70.1
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 1.9e-17 94.0 129 48.8
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 2.5e-17 93.6 77 57.1
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 2.5e-17 93.6 77 57.1
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 2.5e-17 93.6 68 66.2
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 7.4e-17 92.0 78 56.4
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 7.4e-17 92.0 110 46.4
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 9.7e-17 91.7 71 60.6
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 9.7e-17 91.7 86 52.3
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 2.8e-16 90.1 66 69.7
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 2.8e-16 90.1 64 71.9
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 4.8e-16 89.4 126 48.4
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 8.2e-16 88.6 68 66.2
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 8.2e-16 88.6 66 66.7
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 1.1e-15 88.2 80 55.0
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 1.4e-15 87.8 78 55.1
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.4e-15 87.8 84 58.3
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 1.4e-15 87.8 65 69.2
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 1.8e-15 87.4 69 60.9
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 2.4e-15 87.0 85 50.6
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 2.4e-15 87.0 97 51.5
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 3.1e-15 86.7 63 68.3
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 3.1e-15 86.7 88 54.5
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 3.1e-15 86.7 115 44.3
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 4.1e-15 86.3 62 61.3
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 4.1e-15 86.3 65 67.7
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 4.1e-15 86.3 65 67.7
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 4.1e-15 86.3 86 58.1
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 4.1e-15 86.3 73 64.4
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 5.3e-15 85.9 68 60.3
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 9.1e-15 85.1 66 62.1
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 9.1e-15 85.1 66 62.1
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 9.1e-15 85.1 75 56.0
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 1.2e-14 84.7 97 44.3
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 1.2e-14 84.7 83 50.6
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 1.2e-14 84.7 83 50.6
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 1.2e-14 84.7 83 50.6
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 1.5e-14 84.3 62 64.5
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 1.5e-14 84.3 67 62.7
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 1.5e-14 84.3 107 47.7
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 2.0e-14 84.0 75 56.0
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 2.0e-14 84.0 75 56.0
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 2.0e-14 84.0 106 50.9
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 2.0e-14 84.0 61 68.9
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 2.6e-14 83.6 75 61.3
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 2.6e-14 83.6 75 61.3
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 2.6e-14 83.6 72 56.9
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 2.6e-14 83.6 109 48.6
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 3.4e-14 83.2 86 50.0
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 3.4e-14 83.2 63 63.5
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 3.4e-14 83.2 95 51.6
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 5.9e-14 82.4 72 56.9
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 5.9e-14 82.4 64 62.5
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 7.7e-14 82.0 115 45.2
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 7.7e-14 82.0 72 59.7
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 1.0e-13 81.6 68 61.8
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 1.0e-13 81.6 72 56.9
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 1.3e-13 81.3 76 52.6
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 1.3e-13 81.3 84 53.6
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 1.3e-13 81.3 77 53.2
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 2.9e-13 80.1 62 61.3
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 3.8e-13 79.7 61 68.9
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 3.8e-13 79.7 71 62.0
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 3.8e-13 79.7 72 56.9
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 5.0e-13 79.3 66 62.1
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 6.5e-13 79.0 62 66.1
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 6.5e-13 79.0 90 50.0
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 6.5e-13 79.0 59 67.8
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 6.5e-13 79.0 59 67.8
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 8.5e-13 78.6 63 58.7
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 1.1e-12 78.2 59 61.0
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 2.5e-12 77.0 53 67.9
arahy.Tifrunner.gnm1.ann1.RQ0K0U Arachis hypogaea HOM05D002734 ORTHO05D003035 3.2e-12 76.6 57 68.4
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 4.2e-12 76.3 68 58.8
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 4.2e-12 76.3 68 58.8
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 4.2e-12 76.3 63 54.0
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 4.2e-12 76.3 61 68.9
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 5.5e-12 75.9 67 58.2
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 5.5e-12 75.9 62 58.1
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 5.5e-12 75.9 54 66.7
Psat6g194280 Pisum sativum HOM05D000071 ORTHO05D000029 7.2e-12 75.5 90 65.6
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 9.4e-12 75.1 67 52.2
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 9.4e-12 75.1 54 64.8
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 1.2e-11 74.7 62 58.1
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 1.6e-11 74.3 60 65.0
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 1.6e-11 74.3 104 47.1
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 2.7e-11 73.6 83 44.6
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 2.7e-11 73.6 103 47.6
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 6.1e-11 72.4 77 53.2
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 7.9e-11 72.0 95 42.1
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 1.0e-10 71.6 68 54.4
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 1.0e-10 71.6 55 67.3
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 1.8e-10 70.9 102 44.1
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 3.9e-10 69.7 59 59.3
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 3.9e-10 69.7 61 57.4
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 5.1e-10 69.3 61 57.4
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 6.7e-10 68.9 63 58.7
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 6.7e-10 68.9 89 51.7
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 1.1e-09 68.2 60 56.7
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 1.5e-09 67.8 95 42.1
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 2.0e-09 67.4 66 51.5
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 1.3e-08 64.7 53 58.5
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 1.3e-08 64.7 74 50.0
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 1.3e-08 64.7 96 46.9
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 1.7e-08 64.3 83 44.6
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 6.3e-08 62.4 53 56.6
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 8.2e-08 62.0 50 60.0
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 1.1e-07 61.6 49 69.4
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 1.4e-07 61.2 49 67.3
Psat2g098920 Pisum sativum HOM05D001169 ORTHO05D000029 5.3e-07 59.3 71 46.5


User provided reference genes

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