Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 0.0e+00 1203.0 599 100.0
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 0.0e+00 1166.8 599 97.3
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 4.6e-298 1027.3 599 84.8
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 1.0e-297 1026.2 599 84.6
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 5.7e-296 1020.4 599 84.8
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 2.1e-290 1001.9 599 83.6
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 1.3e-287 992.6 599 82.5
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 1.8e-281 972.2 605 81.8
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 1.7e-263 912.5 600 75.5
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 4.8e-263 911.0 567 80.6
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 6.3e-263 910.6 601 75.2
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 3.1e-262 908.3 599 76.3
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 7.0e-262 907.1 604 74.8
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 2.7e-261 905.2 604 74.0
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 3.5e-261 904.8 602 74.3
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 4.5e-261 904.4 604 74.7
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 2.9e-260 901.7 602 74.4
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 1.9e-259 899.0 599 74.0
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 4.2e-259 897.9 600 74.7
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 1.8e-257 892.5 601 74.0
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 2.3e-257 892.1 552 79.9
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 1.5e-256 889.4 600 74.0
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 2.0e-256 889.0 601 73.9
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 2.6e-256 888.6 599 74.8
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 1.7e-255 885.9 538 82.7
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 3.7e-255 884.8 563 76.7
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 4.9e-255 884.4 518 83.2
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 1.4e-254 882.9 592 73.5
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 3.1e-254 881.7 563 77.6
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 7.8e-253 877.1 600 72.0
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 1.0e-252 876.7 570 75.1
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.3e-252 875.5 630 70.8
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 2.3e-252 875.5 676 66.1
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 2.3e-252 875.5 600 73.8
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 2.9e-252 875.2 604 72.4
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 7.3e-251 870.5 598 72.6
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 9.5e-251 870.2 598 71.7
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 8.0e-250 867.1 597 71.5
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 6.8e-249 864.0 602 70.4
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 2.6e-248 862.1 578 73.0
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.6e-248 862.1 625 70.6
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 2.6e-248 862.1 599 72.0
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 7.5e-248 860.5 563 73.7
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 9.8e-248 860.1 607 71.5
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 2.2e-247 859.0 604 72.2
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 2.9e-247 858.6 570 73.7
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 1.1e-246 856.7 589 71.3
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 7.0e-246 854.0 592 71.6
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.6e-245 852.8 600 69.8
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 2.0e-245 852.4 564 73.8
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 1.4e-241 839.7 600 68.7
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 2.3e-241 839.0 600 68.8
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 4.0e-241 838.2 572 71.9
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 6.8e-241 837.4 600 68.5
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 6.8e-241 837.4 600 67.8
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 2.6e-240 835.5 600 68.2
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 2.6e-240 835.5 578 71.8
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 3.4e-240 835.1 602 68.1
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 3.4e-240 835.1 600 67.7
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 3.4e-240 835.1 572 71.7
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 5.8e-240 834.3 602 67.9
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 1.7e-239 832.8 602 68.1
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 3.2e-238 828.6 601 67.2
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 5.4e-238 827.8 602 67.8
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 4.6e-237 824.7 570 69.6
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 7.8e-237 823.9 663 65.0
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 5.1e-236 821.2 554 70.9
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 6.6e-236 820.8 564 70.4
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 1.9e-235 819.3 577 70.9
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 2.8e-234 815.5 580 69.8
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 3.4e-232 808.5 573 69.6
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 2.3e-228 795.8 599 66.3
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 1.1e-225 786.9 568 68.8
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 1.9e-222 776.2 562 69.0
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 4.2e-222 775.0 517 74.7
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 3.9e-220 768.5 558 67.2
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 1.3e-218 763.5 561 64.7
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 5.3e-217 758.1 570 66.0
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 3.4e-216 755.4 600 63.5
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 7.8e-213 744.2 570 64.4
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 9.0e-209 730.7 535 69.7
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 3.2e-206 722.2 623 62.0
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 4.2e-206 721.8 507 71.6
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 3.0e-204 715.7 526 68.8
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 1.6e-202 709.9 599 63.6
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 1.9e-198 696.4 498 65.5
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 8.7e-196 687.6 553 65.1
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 7.6e-192 674.5 562 58.4
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 1.1e-185 654.1 563 55.8
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 4.5e-184 648.7 460 73.7
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 2.6e-176 622.9 575 57.9
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 1.0e-167 594.3 535 55.0
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 1.9e-158 563.5 576 55.0
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.5e-155 553.9 340 80.0
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 7.5e-155 551.6 386 71.2
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 9.8e-155 551.2 335 82.1
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 2.7e-149 533.1 333 77.2
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 1.5e-142 510.8 572 50.2
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 1.2e-141 507.7 323 73.4
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 1.4e-140 504.2 387 64.1
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 5.2e-140 502.3 372 65.9
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 2.9e-130 469.9 586 42.5
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 3.7e-130 469.5 461 54.7
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 4.4e-123 446.0 398 59.3
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 1.9e-105 387.5 370 52.2
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 7.9e-96 355.5 641 35.1
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 4.3e-94 349.7 215 77.7
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 5.5e-89 332.8 246 67.5
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.6e-88 331.3 235 68.5
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.9e-57 228.0 149 71.8
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.3e-53 215.3 169 60.9
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 3.5e-43 180.6 158 56.3
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 1.1e-41 175.6 154 53.9
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.5e-41 175.3 139 60.4
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.4e-36 158.7 104 72.1
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 7.7e-35 152.9 160 52.5
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 7.5e-30 136.3 94 70.2
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 6.3e-29 133.3 64 90.6
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 4.5e-27 127.1 100 53.0
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.8e-23 115.2 69 76.8
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 2.0e-19 101.7 71 73.2
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 3.3e-17 94.4 105 47.6
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 2.1e-16 91.7 79 64.6
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 1.2e-14 85.9 85 45.9
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 2.0e-14 85.1 83 61.4
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 9.2e-12 76.3 47 74.5
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 2.8e-08 64.7 45 66.7
Lj5g0008066 Lotus japonicus HOM05D002380 ORTHO05D008286 3.6e-08 64.3 35 77.1
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 8.1e-08 63.2 83 48.2
CBR_g8455 Chara braunii HOM05D002380 ORTHO05D008286 7.5e-06 56.6 61 50.8


User provided reference genes

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