Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BL67PM Arachis hypogaea HOM05D001179 ORTHO05D003685 2.3e-32 141.4 60 100.0
arahy.Tifrunner.gnm1.ann1.H81B4F Arachis hypogaea HOM05D001179 ORTHO05D003685 7.8e-12 73.2 91 44.0
arahy.Tifrunner.gnm1.ann1.PB70UC Arachis hypogaea HOM05D001179 ORTHO05D003685 1.1e-10 69.3 88 43.2
arahy.Tifrunner.gnm1.ann1.R3C42M Arachis hypogaea HOM05D001179 ORTHO05D003685 1.1e-10 69.3 88 43.2
Cpa.g.sc19.67 Carica papaya HOM05D001179 ORTHO05D003685 3.3e-10 67.8 88 42.0
unitig_736.g22963 Utricularia gibba HOM05D001179 ORTHO05D003685 5.6e-10 67.0 88 43.2
Glyma.06G144500 Glycine max HOM05D001179 ORTHO05D003685 9.5e-10 66.2 88 43.2
Glyma.04G221300 Glycine max HOM05D001179 ORTHO05D003685 1.6e-09 65.5 88 42.0
Phvul.009G141600 Phaseolus vulgaris HOM05D001179 ORTHO05D003685 1.6e-09 65.5 88 42.0
unitig_90.g27576 Utricularia gibba HOM05D001179 ORTHO05D003685 1.6e-09 65.5 87 43.7
Haze_17344 Corylus avellana HOM05D001179 ORTHO05D003685 2.8e-09 64.7 88 42.0
MSTRG.8897 Avicennia marina HOM05D001179 ORTHO05D003685 3.6e-09 64.3 88 42.0
Cfa001218 Carpinus fangiana HOM05D001179 ORTHO05D003685 3.6e-09 64.3 88 42.0
Atru.chr12.168 Acer truncatum HOM05D001179 ORTHO05D003685 6.2e-09 63.5 88 40.9
Cc02_g05460 Coffea canephora HOM05D001179 ORTHO05D003685 6.2e-09 63.5 88 40.9
TWI09G0424 Tripterygium wilfordii HOM05D001179 ORTHO05D003685 6.2e-09 63.5 88 42.0
VMungo1309G2082 Vigna mungo HOM05D001179 ORTHO05D003685 6.2e-09 63.5 88 40.9
Lalb_Chr08g0239041 Lupinus albus HOM05D001179 ORTHO05D003685 8.1e-09 63.2 88 40.9
GSVIVG01032675001 Vitis vinifera HOM05D001179 ORTHO05D003685 8.1e-09 63.2 88 42.0
Eucgr.J00124 Eucalyptus grandis HOM05D001179 ORTHO05D003685 1.4e-08 62.4 88 40.9
MBI15_g08969_MAGBIO Magnolia biondii HOM05D001179 ORTHO05D003685 1.4e-08 62.4 88 40.9
THA.LOC104826834 Tarenaya hassleriana HOM05D001179 ORTHO05D003685 1.4e-08 62.4 88 40.9
HanXRQChr14g0460121 Helianthus annuus HOM05D001179 ORTHO05D003685 1.8e-08 62.0 88 39.8
MELO3C020487.2 Cucumis melo HOM05D001179 ORTHO05D003685 2.3e-08 61.6 89 40.4
ECA238G4669 Erigeron canadensis HOM05D001179 ORTHO05D003685 2.3e-08 61.6 88 39.8
Lj1g0015160 Lotus japonicus HOM05D001179 ORTHO05D003685 3.1e-08 61.2 89 41.6
PGR044G0674 Punica granatum HOM05D001179 ORTHO05D003685 3.1e-08 61.2 88 40.9
Rhsim03G0151400 Rhododendron simsii HOM05D001179 ORTHO05D003685 3.1e-08 61.2 88 40.9
Duzib106G1949 Durio zibethinus HOM05D001179 ORTHO05D003685 4.0e-08 60.8 88 40.9
Sed0008431 Sechium edule HOM05D001179 ORTHO05D003685 4.0e-08 60.8 89 41.6
ClCG03G000100 Citrullus lanatus HOM05D001179 ORTHO05D003685 5.2e-08 60.5 88 40.9
TAR623G0689 Trochodendron aralioides HOM05D001179 ORTHO05D003685 5.2e-08 60.5 88 39.8
MSTRG.27266 Avicennia marina HOM05D001179 ORTHO05D003685 6.8e-08 60.1 88 39.8
MSTRG.8372 Avicennia marina HOM05D001179 ORTHO05D003685 6.8e-08 60.1 88 38.6
CDE06G1288 Ceratophyllum demersum HOM05D001179 ORTHO05D003685 6.8e-08 60.1 88 39.8
Lj8C56G4 Lonicera japonica HOM05D001179 ORTHO05D003685 6.8e-08 60.1 88 39.8
Solyc06g049080.3 Solanum lycopersicum HOM05D001179 ORTHO05D003685 6.8e-08 60.1 88 39.8
Sopen06g015450 Solanum pennellii HOM05D001179 ORTHO05D003685 6.8e-08 60.1 88 39.8
PGSC0003DMG400016647 Solanum tuberosum HOM05D001179 ORTHO05D003685 6.8e-08 60.1 88 39.8
TWI53G1486 Tripterygium wilfordii HOM05D001179 ORTHO05D003685 6.8e-08 60.1 88 42.0
Zm00001eb347200 Zea mays HOM05D001179 ORTHO05D003685 6.8e-08 60.1 88 40.9
Oeu036535.1 Olea europaea HOM05D001179 ORTHO05D003685 8.9e-08 59.7 88 39.8
Peaxi162Scf00739g00213 Petunia axillaris HOM05D001179 ORTHO05D003685 8.9e-08 59.7 88 39.8
TPR.G16129 Trifolium pratense HOM05D001179 ORTHO05D003685 8.9e-08 59.7 88 39.8
Nitab4.5_0001743g0010 Nicotiana tabacum HOM05D001179 ORTHO05D003685 1.2e-07 59.3 88 39.8
Nitab4.5_0004599g0060 Nicotiana tabacum HOM05D001179 ORTHO05D003685 1.2e-07 59.3 88 39.8
QL08p064627 Quercus lobata HOM05D001179 ORTHO05D003685 1.2e-07 59.3 88 39.8
RcHm_v2.0_Chr5g0072741 Rosa chinensis HOM05D001179 ORTHO05D003685 1.2e-07 59.3 88 39.8
Thecc.10G182900 Theobroma cacao HOM05D001179 ORTHO05D003685 1.2e-07 59.3 88 39.8
vmacro06882 Vaccinium macrocarpon HOM05D001179 ORTHO05D003685 1.2e-07 59.3 88 40.9
Ca_16879_v3 Cicer arietinum L. HOM05D001179 ORTHO05D003685 1.5e-07 58.9 88 38.6
Sp3g09250 Schrenkiella parvula HOM05D001179 ORTHO05D003685 1.5e-07 58.9 88 39.8
Zm00001eb285090 Zea mays HOM05D001179 ORTHO05D003685 1.5e-07 58.9 88 39.8
BcaC09g48138 Brassica carinata HOM05D001179 ORTHO05D003685 2.0e-07 58.5 88 38.6
BolC1t05344H Brassica oleracea HOM05D001179 ORTHO05D003685 2.0e-07 58.5 88 38.6
Cpa.g.sc2.301 Carica papaya HOM05D001179 ORTHO05D003685 2.0e-07 58.5 88 39.8
CsaV3_1G004740 Cucumis sativus L. HOM05D001179 ORTHO05D003685 2.0e-07 58.5 88 39.8
Gohir.A05G278100 Gossypium hirsutum HOM05D001179 ORTHO05D003685 2.0e-07 58.5 88 38.6
Gohir.A10G178700 Gossypium hirsutum HOM05D001179 ORTHO05D003685 2.0e-07 58.5 88 38.6
Gohir.D05G279800 Gossypium hirsutum HOM05D001179 ORTHO05D003685 2.0e-07 58.5 88 38.6
Gohir.D10G185400 Gossypium hirsutum HOM05D001179 ORTHO05D003685 2.0e-07 58.5 88 38.6
Gorai.009G293300 Gossypium raimondii HOM05D001179 ORTHO05D003685 2.0e-07 58.5 88 38.6
Gorai.011G207900 Gossypium raimondii HOM05D001179 ORTHO05D003685 2.0e-07 58.5 88 38.6
Psat5g067840 Pisum sativum HOM05D001179 ORTHO05D003685 2.0e-07 58.5 88 39.8
PGR142G2939 Punica granatum HOM05D001179 ORTHO05D003685 2.0e-07 58.5 88 38.6
Rhsim09G0185000 Rhododendron simsii HOM05D001179 ORTHO05D003685 2.0e-07 58.5 88 39.8
COL.COLO4_19443 Corchorus olitorius HOM05D001179 ORTHO05D003685 2.6e-07 58.2 88 38.6
ECA233G6173 Erigeron canadensis HOM05D001179 ORTHO05D003685 2.6e-07 58.2 88 38.6
Eucgr.G03132 Eucalyptus grandis HOM05D001179 ORTHO05D003685 2.6e-07 58.2 88 39.8
Aa31LG3G3910 Aethionema arabicum HOM05D001179 ORTHO05D003685 3.4e-07 57.8 88 39.8
AT3G10920 Arabidopsis thaliana HOM05D001179 ORTHO05D003685 3.4e-07 57.8 88 39.8
BcaB04g21165 Brassica carinata HOM05D001179 ORTHO05D003685 3.4e-07 57.8 88 39.8
CANSAT56G1791 Cannabis sativa HOM05D001179 ORTHO05D003685 3.4e-07 57.8 88 38.6
CANSAT56G3903 Cannabis sativa HOM05D001179 ORTHO05D003685 3.4e-07 57.8 88 38.6
Carub.0003s1019 Capsella rubella HOM05D001179 ORTHO05D003685 3.4e-07 57.8 88 39.8
CARHR085500 Cardamine hirsuta HOM05D001179 ORTHO05D003685 3.4e-07 57.8 88 39.8
Thhalv10021449m.g Eutrema salsugineum HOM05D001179 ORTHO05D003685 3.4e-07 57.8 88 38.6
Prupe.2G262400 Prunus persica HOM05D001179 ORTHO05D003685 3.4e-07 57.8 88 38.6
PGR044G2534 Punica granatum HOM05D001179 ORTHO05D003685 3.4e-07 57.8 88 40.9
HanXRQChr08g0221521 Helianthus annuus HOM05D001179 ORTHO05D003685 4.4e-07 57.4 88 38.6
Manes.07G140500 Manihot esculenta HOM05D001179 ORTHO05D003685 4.4e-07 57.4 88 38.6
Potri.013G092600 Populus trichocarpa HOM05D001179 ORTHO05D003685 4.4e-07 57.4 87 37.9
Sc11g0005770 Simmondsia chinensis HOM05D001179 ORTHO05D003685 4.4e-07 57.4 88 39.8
BcaC05g29410 Brassica carinata HOM05D001179 ORTHO05D003685 5.8e-07 57.0 88 38.6
A05p38320 Brassica napus HOM05D001179 ORTHO05D003685 5.8e-07 57.0 88 38.6
C05p57140 Brassica napus HOM05D001179 ORTHO05D003685 5.8e-07 57.0 88 38.6
BolC5t34377H Brassica oleracea HOM05D001179 ORTHO05D003685 5.8e-07 57.0 88 38.6
BraA01t04214Z Brassica rapa HOM05D001179 ORTHO05D003685 5.8e-07 57.0 88 38.6
BraA05t22623Z Brassica rapa HOM05D001179 ORTHO05D003685 5.8e-07 57.0 88 38.6
AUR62024917 Chenopodium quinoa HOM05D001179 ORTHO05D003685 5.8e-07 57.0 88 39.8
AUR62030627 Chenopodium quinoa HOM05D001179 ORTHO05D003685 5.8e-07 57.0 88 39.8
Lsat_1_v5_gn_2_125000 Lactuca sativa HOM05D001179 ORTHO05D003685 7.6e-07 56.6 86 38.4
Medtr3g094250 Medicago truncatula HOM05D001179 ORTHO05D003685 7.6e-07 56.6 88 37.5
Sabra13G0072300 Salix brachista HOM05D001179 ORTHO05D003685 7.6e-07 56.6 87 36.8
Hund15827 Selenicereus undatus HOM05D001179 ORTHO05D003685 7.6e-07 56.6 88 38.6
AL3G22460 Arabidopsis lyrata HOM05D001179 ORTHO05D003685 9.9e-07 56.2 88 39.8
CANSAT54G3050 Cannabis sativa HOM05D001179 ORTHO05D003685 9.9e-07 56.2 88 37.5
RcHm_v2.0_Chr1g0371971 Rosa chinensis HOM05D001179 ORTHO05D003685 9.9e-07 56.2 88 37.5
Actinidia00995 Actinidia chinensis HOM05D001179 ORTHO05D003685 1.3e-06 55.8 86 38.4
EL10Ac2g02625 Beta vulgaris HOM05D001179 ORTHO05D003685 1.3e-06 55.8 88 38.6
Cfa011821 Carpinus fangiana HOM05D001179 ORTHO05D003685 1.3e-06 55.8 88 38.6
Haze_24459 Corylus avellana HOM05D001179 ORTHO05D003685 1.3e-06 55.8 88 38.6
ATR1127G034 Amborella trichopoda HOM05D001179 ORTHO05D003685 2.2e-06 55.1 87 36.8
CSS0007208 Camellia sinensis var. sinensis HOM05D001179 ORTHO05D003685 2.2e-06 55.1 85 37.6
CSS0020848 Camellia sinensis var. sinensis HOM05D001179 ORTHO05D003685 2.2e-06 55.1 85 37.6
Os05g0323900 Oryza sativa ssp. japonica HOM05D001179 ORTHO05D003685 2.9e-06 54.7 88 37.5
QL01p025028 Quercus lobata HOM05D001179 ORTHO05D003685 2.9e-06 54.7 88 38.6
CiPaw.01G305300 Carya illinoinensis HOM05D001179 ORTHO05D003685 3.7e-06 54.3 88 37.5
MD01G1164700 Malus domestica HOM05D001179 ORTHO05D003685 3.7e-06 54.3 88 36.4
PSO339G1613 Papaver somniferum HOM05D001179 ORTHO05D003685 3.7e-06 54.3 88 38.6
Ah.12g064220 Amaranthus hybridus HOM05D001179 ORTHO05D003685 4.9e-06 53.9 88 37.5
CAN.G203.48 Capsicum annuum HOM05D001179 ORTHO05D003685 4.9e-06 53.9 88 38.6
Potri.019G057300 Populus trichocarpa HOM05D001179 ORTHO05D003685 4.9e-06 53.9 86 37.2
Aqoxy2G00698 Aquilegia oxysepala HOM05D001179 ORTHO05D003685 6.4e-06 53.5 88 38.6
FvH4_7g25730 Fragaria vesca HOM05D001179 ORTHO05D003685 6.4e-06 53.5 88 36.4
Nitab4.5_0000375g0200 Nicotiana tabacum HOM05D001179 ORTHO05D003685 8.4e-06 53.1 89 40.4
PSO384G4860 Papaver somniferum HOM05D001179 ORTHO05D003685 8.4e-06 53.1 88 37.5
Sc10g0002960 Simmondsia chinensis HOM05D001179 ORTHO05D003685 8.4e-06 53.1 88 37.5


User provided reference genes

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