Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 1.1e-250 869.4 417 100.0
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 7.1e-245 850.1 417 98.1
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.1e-241 838.6 417 96.9
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 2.9e-137 492.7 467 51.6
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 8.9e-123 444.5 473 48.6
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.5e-122 443.7 451 49.7
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 2.0e-122 443.4 460 48.0
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 2.6e-122 443.0 464 49.6
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 6.4e-121 438.3 462 47.2
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 1.3e-116 424.1 450 48.7
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 5.8e-114 415.2 432 51.2
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 4.6e-111 405.6 460 45.2
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 7.9e-111 404.8 462 44.8
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 1.5e-109 400.6 465 44.3
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.5e-109 399.8 454 45.4
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 3.3e-109 399.4 464 44.0
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 7.4e-109 398.3 463 43.2
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 1.6e-108 397.1 465 43.9
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 4.8e-108 395.6 463 41.7
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.8e-107 393.7 469 45.4
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 3.1e-107 392.9 469 42.0
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 6.9e-107 391.7 543 40.3
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 8.4e-105 384.8 463 42.3
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.9e-104 383.6 464 42.7
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 5.5e-104 382.1 464 42.7
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.0e-102 377.9 426 44.1
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 3.0e-102 376.3 463 41.5
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.5e-101 374.0 461 40.8
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.9e-101 373.6 456 42.1
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 4.3e-101 372.5 460 44.3
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 7.4e-101 371.7 450 42.0
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 2.1e-100 370.2 460 41.1
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 8.2e-100 368.2 463 41.0
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 1.1e-99 367.9 408 46.1
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 1.8e-99 367.1 439 43.7
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 3.1e-99 366.3 460 40.7
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 4.0e-99 365.9 460 40.7
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 9.0e-99 364.8 457 41.8
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 1.5e-98 364.0 452 41.6
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 2.0e-98 363.6 453 41.7
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 5.8e-98 362.1 464 41.8
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.1e-96 357.8 463 40.4
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 3.2e-96 356.3 464 40.9
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 1.2e-95 354.4 456 40.6
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.6e-95 354.0 454 38.8
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 6.0e-95 352.1 513 39.0
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 2.3e-94 350.1 452 39.8
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 5.7e-93 345.5 438 42.2
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 3.7e-92 342.8 456 40.1
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 1.4e-91 340.9 456 39.0
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 4.1e-91 339.3 449 40.1
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.7e-89 334.0 454 40.1
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 8.5e-89 331.6 459 39.0
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 8.5e-89 331.6 459 39.0
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 4.2e-88 329.3 461 37.7
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 9.7e-85 318.2 410 39.0
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 9.7e-85 318.2 469 38.2
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.1e-83 314.7 442 40.5
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 2.0e-82 310.5 456 36.6
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 7.7e-82 308.5 442 39.8
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 1.0e-81 308.1 459 38.1
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 1.0e-81 308.1 313 50.5
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.0e-81 308.1 467 38.1
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 1.4e-80 304.3 465 36.8
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 7.9e-79 298.5 449 36.1
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.0e-77 293.9 432 38.4
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.0e-77 293.9 483 35.0
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 4.4e-77 292.7 432 38.7
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 5.7e-77 292.4 432 38.2
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 2.2e-76 290.4 474 34.8
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 8.2e-76 288.5 470 35.7
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.4e-75 287.7 530 33.8
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.4e-75 287.0 464 35.6
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 6.9e-75 285.4 417 38.6
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 1.5e-74 284.3 447 35.1
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.0e-74 283.9 447 35.3
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 2.0e-74 283.9 378 40.5
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.0e-74 283.9 375 42.4
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 4.5e-74 282.7 449 33.9
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.3e-73 281.2 448 34.6
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 8.5e-73 278.5 447 34.9
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 3.0e-70 270.0 360 40.8
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 3.9e-70 269.6 435 37.5
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 5.2e-70 269.2 386 37.6
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.7e-69 265.8 478 32.4
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 7.4e-69 265.4 453 33.8
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 9.7e-69 265.0 456 35.3
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.7e-68 264.2 482 32.6
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.8e-68 263.5 456 34.9
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.8e-68 263.5 456 34.9
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 3.7e-68 263.1 455 35.6
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 6.3e-68 262.3 460 34.8
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.1e-67 261.5 451 35.7
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 3.1e-67 260.0 461 34.7
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 3.1e-67 260.0 387 36.4
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 7.0e-67 258.8 456 34.4
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 2.0e-66 257.3 459 34.4
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 2.6e-66 256.9 427 34.4
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 5.9e-66 255.8 458 35.4
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.2e-65 253.8 455 34.7
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 5.0e-65 252.7 456 35.3
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 8.5e-65 251.9 451 34.8
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.1e-64 251.5 428 34.3
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 2.5e-64 250.4 456 33.6
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 3.6e-63 246.5 459 33.6
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.8e-62 244.2 475 32.8
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 6.7e-62 242.3 461 33.6
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 3.3e-61 240.0 477 33.1
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 5.7e-61 239.2 435 33.6
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 7.5e-61 238.8 475 33.9
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 9.7e-61 238.4 468 32.7
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.8e-59 234.2 477 32.3
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.4e-59 233.8 478 31.6
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 3.1e-59 233.4 227 51.5
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.7e-57 227.6 388 32.5
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 2.9e-57 226.9 386 34.5
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.8e-57 226.5 263 44.9
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 8.5e-57 225.3 463 31.3
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 1.2e-55 221.5 457 33.0
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 4.7e-55 219.5 447 31.1
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.8e-54 217.6 465 31.8
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 4.0e-54 216.5 459 32.5
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 4.0e-54 216.5 459 32.5
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 8.8e-54 215.3 454 33.3
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 8.8e-54 215.3 459 32.7
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 2.6e-53 213.8 459 32.2
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 4.4e-53 213.0 459 31.4
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.6e-50 204.5 267 40.1
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 8.6e-49 198.7 265 38.5
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 1.1e-48 198.4 482 30.9
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 6.1e-47 192.6 471 29.7
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.3e-46 190.7 281 40.9
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 2.3e-46 190.7 493 28.4
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.2e-45 188.3 336 34.8
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.2e-45 188.3 383 32.1
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.2e-45 188.3 298 35.2
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 5.7e-45 186.0 446 29.6
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 1.3e-44 184.9 293 41.6
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 1.7e-44 184.5 206 45.1
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.1e-43 181.8 303 34.3
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 1.3e-41 174.9 206 40.8
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.9e-40 171.0 496 28.4
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 6.8e-38 162.5 267 37.8
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.6e-37 160.6 232 38.4
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 7.8e-34 149.1 133 54.9
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.5e-32 144.8 287 32.1
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 6.2e-31 139.4 130 53.1
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 8.3e-28 129.0 147 42.9
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 4.0e-22 110.2 271 31.0
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.6e-21 107.5 232 34.1
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 2.4e-19 100.9 194 29.4
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 3.2e-19 100.5 268 27.2
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 7.1e-19 99.4 159 38.4
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 3.0e-17 94.0 154 34.4
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 2.1e-15 87.8 117 35.0
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 2.8e-15 87.4 61 63.9
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 1.8e-14 84.7 88 44.3
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 2.6e-13 80.9 123 38.2
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 9.9e-13 79.0 115 41.7
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 7.8e-10 69.3 80 43.8
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.3e-09 68.6 87 35.6
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 2.3e-09 67.8 51 60.8
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.1e-08 65.5 78 35.9
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 4.0e-06 57.0 64 42.2
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 5.2e-06 56.6 69 52.2


User provided reference genes

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