Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AYMC7Q Arachis hypogaea HOM05D000188 ORTHO05D031558 4.0e-27 124.0 62 100.0
arahy.Tifrunner.gnm1.ann1.PQ7GEF Arachis hypogaea HOM05D000188 ORTHO05D031558 1.5e-18 95.5 50 94.0
arahy.Tifrunner.gnm1.ann1.1M4GHK Arachis hypogaea HOM05D000188 ORTHO05D007437 4.0e-11 70.9 36 91.7
arahy.Tifrunner.gnm1.ann1.51X55V Arachis hypogaea HOM05D000188 ORTHO05D007437 4.0e-11 70.9 36 91.7
Aqoxy1G00273 Aquilegia oxysepala HOM05D000188 ORTHO05D007437 2.6e-10 68.2 38 76.3
Potri.006G054600 Populus trichocarpa HOM05D000188 ORTHO05D007437 3.4e-10 67.8 36 83.3
Sabra06G0038600 Salix brachista HOM05D000188 ORTHO05D007437 3.4e-10 67.8 36 83.3
Glyma.03G139000 Glycine max HOM05D000188 ORTHO05D007437 5.8e-10 67.0 39 79.5
TPR.G3833 Trifolium pratense HOM05D000188 ORTHO05D007437 5.8e-10 67.0 36 86.1
TWI74G0248 Tripterygium wilfordii HOM05D000188 ORTHO05D007437 5.8e-10 67.0 36 77.8
Medtr7g092200 Medicago truncatula HOM05D000188 ORTHO05D007437 7.5e-10 66.6 36 83.3
GSVIVG01033323001 Vitis vinifera HOM05D000188 ORTHO05D007437 1.3e-09 65.9 36 83.3
Lj1g0015472 Lotus japonicus HOM05D000188 ORTHO05D007437 1.7e-09 65.5 36 80.6
Psat3g071640 Pisum sativum HOM05D000188 ORTHO05D007437 1.7e-09 65.5 36 83.3
Phvul.001G136200 Phaseolus vulgaris HOM05D000188 ORTHO05D007437 2.2e-09 65.1 36 80.6
RcHm_v2.0_Chr3g0481241 Rosa chinensis HOM05D000188 ORTHO05D007437 2.2e-09 65.1 35 82.9
Glyma.19G142100 Glycine max HOM05D000188 ORTHO05D007437 3.7e-09 64.3 36 80.6
Lalb_Chr20g0110861 Lupinus albus HOM05D000188 ORTHO05D007437 3.7e-09 64.3 36 77.8
QL07p021464 Quercus lobata HOM05D000188 ORTHO05D007437 3.7e-09 64.3 36 80.6
MBI01_g18887_MAGBIO Magnolia biondii HOM05D000188 ORTHO05D007437 4.9e-09 63.9 35 85.7
MD14G1067600 Malus domestica HOM05D000188 ORTHO05D007437 4.9e-09 63.9 36 80.6
Prupe.7G066800 Prunus persica HOM05D000188 ORTHO05D007437 4.9e-09 63.9 36 80.6
Ca_08479_v3 Cicer arietinum L. HOM05D000188 ORTHO05D007437 6.4e-09 63.5 36 80.6
ClCG10G017160 Citrullus lanatus HOM05D000188 ORTHO05D007437 6.4e-09 63.5 34 82.4
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 6.4e-09 63.5 36 77.8
MELO3C009668.2 Cucumis melo HOM05D000188 ORTHO05D007437 6.4e-09 63.5 34 82.4
CsaV3_3G039240 Cucumis sativus L. HOM05D000188 ORTHO05D007437 6.4e-09 63.5 34 82.4
Duzib128G1302 Durio zibethinus HOM05D000188 ORTHO05D007437 6.4e-09 63.5 35 82.9
VMungo1383G2187 Vigna mungo HOM05D000188 ORTHO05D007437 6.4e-09 63.5 36 77.8
MD12G1067500 Malus domestica HOM05D000188 ORTHO05D007437 8.3e-09 63.2 36 77.8
PGR004G2356 Punica granatum HOM05D000188 ORTHO05D007437 8.3e-09 63.2 35 82.9
Dinv24129 Davidia involucrata HOM05D000188 ORTHO05D007437 1.1e-08 62.8 36 75.0
Hma1.2p1_0621F.1_g190750 Hydrangea macrophylla HOM05D000188 ORTHO05D007437 1.1e-08 62.8 36 72.2
Lj2C379G3 Lonicera japonica HOM05D004307 ORTHO05D005068 1.1e-08 62.8 36 75.0
Peaxi162Scf00650g00224 Petunia axillaris HOM05D000188 ORTHO05D007437 1.1e-08 62.8 36 77.8
THA.LOC104827302 Tarenaya hassleriana HOM05D000188 ORTHO05D007437 1.4e-08 62.4 36 75.0
vmacro09090 Vaccinium macrocarpon HOM05D000188 ORTHO05D007437 1.4e-08 62.4 36 77.8
MSTRG.19880 Avicennia marina HOM05D000188 ORTHO05D007437 1.9e-08 62.0 36 75.0
FvH4_6g23281 Fragaria vesca HOM05D000188 ORTHO05D007437 1.9e-08 62.0 35 80.0
FAN09G1107 Fragaria x ananassa HOM05D000188 ORTHO05D007437 1.9e-08 62.0 35 80.0
FAN14G5355 Fragaria x ananassa HOM05D000188 ORTHO05D007437 1.9e-08 62.0 35 80.0
Gohir.A09G124000 Gossypium hirsutum HOM05D000188 ORTHO05D007437 1.9e-08 62.0 35 80.0
Gorai.006G138300 Gossypium raimondii HOM05D000188 ORTHO05D007437 1.9e-08 62.0 35 80.0
Rhsim04G0100100 Rhododendron simsii HOM05D000188 ORTHO05D007437 1.9e-08 62.0 36 77.8
RcHm_v2.0_Chr3g0481211 Rosa chinensis HOM05D000188 ORTHO05D007437 1.9e-08 62.0 35 80.0
Migut.J01781 Erythranthe guttata HOM05D000188 ORTHO05D007437 2.4e-08 61.6 36 75.0
Nitab4.5_0002220g0040 Nicotiana tabacum HOM05D000188 ORTHO05D007437 2.4e-08 61.6 36 77.8
Nitab4.5_0005201g0050 Nicotiana tabacum HOM05D000188 ORTHO05D007437 2.4e-08 61.6 36 77.8
Sed0022594 Sechium edule HOM05D000188 ORTHO05D007437 2.4e-08 61.6 34 76.5
Sc13g0001930 Simmondsia chinensis HOM05D000188 ORTHO05D007437 3.2e-08 61.2 35 77.1
TAR369G1129 Trochodendron aralioides HOM05D000188 ORTHO05D007437 3.2e-08 61.2 36 75.0
Actinidia38564 Actinidia chinensis HOM05D000188 ORTHO05D007437 4.1e-08 60.8 36 75.0
CiPaw.09G035200 Carya illinoinensis HOM05D000188 ORTHO05D007437 4.1e-08 60.8 36 77.8
Carub.0005s0219 Capsella rubella HOM05D000188 ORTHO05D007437 7.1e-08 60.1 39 69.2
CAN.G233.3 Capsicum annuum HOM05D000188 ORTHO05D007437 7.1e-08 60.1 36 75.0
HanXRQChr17g0566391 Helianthus annuus HOM05D000188 ORTHO05D007437 7.1e-08 60.1 36 69.4
Atru.chr1.1041 Acer truncatum HOM05D000188 ORTHO05D007437 9.2e-08 59.7 36 77.8
CSS0006699 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D007437 9.2e-08 59.7 36 72.2
CSS0019762 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D007437 9.2e-08 59.7 36 72.2
CSS0023170 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D007437 9.2e-08 59.7 36 72.2
CSS0039490 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D007437 9.2e-08 59.7 36 72.2
Cpa.g.sc92.15 Carica papaya HOM05D000188 ORTHO05D007437 9.2e-08 59.7 36 72.2
FAN02G0408 Fragaria x ananassa HOM05D000188 ORTHO05D007437 9.2e-08 59.7 35 77.1
Gohir.D09G120800 Gossypium hirsutum HOM05D000188 ORTHO05D007437 9.2e-08 59.7 35 77.1
PSO339G4937 Papaver somniferum HOM05D000188 ORTHO05D007437 9.2e-08 59.7 36 72.2
PSO384G0288 Papaver somniferum HOM05D000188 ORTHO05D007437 9.2e-08 59.7 36 72.2
COL.COLO4_28666 Corchorus olitorius HOM05D000188 ORTHO05D007437 1.2e-07 59.3 35 74.3
DCAR_013585 Daucus carota HOM05D000188 ORTHO05D007437 1.2e-07 59.3 60 53.3
Oeu033783.1 Olea europaea HOM05D000188 ORTHO05D007437 1.2e-07 59.3 34 76.5
Cc06_g16650 Coffea canephora HOM05D000188 ORTHO05D007437 1.6e-07 58.9 36 72.2
AT2G03270 Arabidopsis thaliana HOM05D000188 ORTHO05D007437 2.1e-07 58.5 39 66.7
ECA234G1888 Erigeron canadensis HOM05D000188 ORTHO05D007437 2.1e-07 58.5 35 71.4
Eucgr.A02391 Eucalyptus grandis HOM05D000188 ORTHO05D007437 2.1e-07 58.5 36 69.4
Thhalv10003809m.g Eutrema salsugineum HOM05D000188 ORTHO05D007437 2.1e-07 58.5 35 74.3
Sp2g14200 Schrenkiella parvula HOM05D000188 ORTHO05D007437 2.1e-07 58.5 35 74.3
CSS0026832 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D007437 2.7e-07 58.2 36 69.4
Solyc03g063760.4 Solanum lycopersicum HOM05D000188 ORTHO05D007437 2.7e-07 58.2 36 75.0
Sopen03g017090 Solanum pennellii HOM05D000188 ORTHO05D007437 2.7e-07 58.2 36 75.0
PGSC0003DMG400019791 Solanum tuberosum HOM05D000188 ORTHO05D007437 2.7e-07 58.2 36 75.0
SGA_v2.0_scaffold105G30444 Striga asiatica HOM05D004307 ORTHO05D005068 2.7e-07 58.2 36 69.4
A09p24290 Brassica napus HOM05D000188 ORTHO05D007437 3.5e-07 57.8 35 74.3
ATR0605G200 Amborella trichopoda HOM05D000188 ORTHO05D007437 4.6e-07 57.4 35 74.3
CANSAT80G2344 Cannabis sativa HOM05D000188 ORTHO05D007437 4.6e-07 57.4 36 69.4
Lsat_1_v5_gn_4_24661 Lactuca sativa HOM05D000188 ORTHO05D007437 4.6e-07 57.4 36 69.4
Hund19166 Selenicereus undatus HOM05D000188 ORTHO05D007437 4.6e-07 57.4 36 72.2
Thecc.05G161500 Theobroma cacao HOM05D000188 ORTHO05D007437 4.6e-07 57.4 35 74.3
AL5G12910 Arabidopsis lyrata HOM05D000188 ORTHO05D007437 6.0e-07 57.0 35 71.4
C09p31150 Brassica napus HOM05D000188 ORTHO05D007437 6.0e-07 57.0 35 71.4
BolC9t55972H Brassica oleracea HOM05D000188 ORTHO05D007437 6.0e-07 57.0 35 71.4
BraA09t38025Z Brassica rapa HOM05D000188 ORTHO05D007437 6.0e-07 57.0 35 71.4
CARHR145610 Cardamine hirsuta HOM05D000188 ORTHO05D007437 6.0e-07 57.0 36 69.4
CSS0019674 Camellia sinensis var. sinensis HOM05D004307 ORTHO05D005068 7.8e-07 56.6 36 69.4
CSS0041633 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D007437 7.8e-07 56.6 36 69.4
Dinv18079 Davidia involucrata HOM05D000188 ORTHO05D031558 7.8e-07 56.6 36 66.7
Manes.09G028600 Manihot esculenta HOM05D000188 ORTHO05D007437 7.8e-07 56.6 35 71.4
Psat0s4353g0080 Pisum sativum HOM05D025452 ORTHO05D018004 7.8e-07 56.6 30 86.7
Aa31sc40G10 Aethionema arabicum HOM05D000188 ORTHO05D007437 1.3e-06 55.8 36 66.7
CDE05G3373 Ceratophyllum demersum HOM05D000188 ORTHO05D007437 1.3e-06 55.8 36 69.4
Ciclev10004523m.g Citrus clementina HOM05D000188 ORTHO05D007437 1.3e-06 55.8 36 69.4
Nn7g36129 Nelumbo nucifera HOM05D000188 ORTHO05D007437 1.3e-06 55.8 35 71.4
AUR62024402 Chenopodium quinoa HOM05D000188 ORTHO05D007437 2.3e-06 55.1 36 66.7
AUR62025996 Chenopodium quinoa HOM05D000188 ORTHO05D007437 3.0e-06 54.7 36 66.7
EL10Ac3g07022 Beta vulgaris HOM05D000188 ORTHO05D007437 3.9e-06 54.3 36 66.7
Mapoly0036s0146 Marchantia polymorpha HOM05D000188 ORTHO05D007437 6.6e-06 53.5 35 60.0


User provided reference genes

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