Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 4.0e-148 528.1 270 100.0
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 3.6e-133 478.4 355 74.4
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 2.8e-93 345.9 271 69.7
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.2e-91 340.5 272 69.1
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 5.8e-91 338.2 272 68.0
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 3.8e-90 335.5 269 67.7
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 1.5e-86 323.6 270 65.9
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 8.2e-85 317.8 270 65.2
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 7.9e-80 301.2 225 72.9
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 6.7e-79 298.1 239 66.5
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 4.8e-77 292.0 257 62.6
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 4.4e-70 268.9 269 56.9
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 3.1e-68 262.7 260 55.8
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 7.0e-68 261.5 270 55.2
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 5.0e-66 255.4 260 54.6
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 3.2e-65 252.7 272 52.9
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.2e-65 252.7 260 55.0
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 5.5e-65 251.9 263 53.2
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.2e-64 250.8 270 52.6
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 1.6e-64 250.4 270 53.3
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.6e-64 250.4 273 52.7
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 2.1e-64 250.0 262 52.7
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 4.7e-64 248.8 270 54.4
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 4.7e-64 248.8 270 53.7
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 4.7e-64 248.8 270 53.7
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.0e-63 247.7 263 52.1
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.0e-63 247.7 257 54.1
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 4.0e-63 245.7 264 51.1
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 4.0e-63 245.7 257 53.7
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 4.0e-63 245.7 257 53.7
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 5.2e-63 245.4 264 52.3
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 6.7e-63 245.0 270 54.1
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 8.8e-63 244.6 263 51.7
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 1.5e-62 243.8 268 51.9
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 2.0e-62 243.4 268 51.9
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 2.6e-62 243.0 257 53.3
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 5.7e-62 241.9 257 54.1
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.3e-61 240.7 270 49.6
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 1.3e-61 240.7 263 51.3
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 2.8e-61 239.6 270 52.2
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 3.7e-61 239.2 270 51.9
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 4.8e-61 238.8 264 49.6
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 6.3e-61 238.4 270 52.2
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 8.2e-61 238.0 224 57.6
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 8.2e-61 238.0 271 49.4
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 4.1e-60 235.7 270 51.5
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 5.3e-60 235.3 266 50.4
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 7.0e-60 235.0 214 57.0
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 1.2e-59 234.2 270 51.1
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.6e-59 233.8 269 51.3
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 2.0e-59 233.4 273 49.8
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 2.0e-59 233.4 294 48.0
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 3.5e-59 232.6 270 51.9
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 7.7e-59 231.5 270 51.9
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 7.7e-59 231.5 232 53.4
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 7.7e-59 231.5 270 51.5
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 1.0e-58 231.1 270 49.3
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 2.2e-58 229.9 270 49.6
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 2.2e-58 229.9 257 50.2
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 2.9e-58 229.6 257 49.8
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 3.8e-58 229.2 270 51.5
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.0e-58 228.8 261 51.3
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 6.5e-58 228.4 270 51.5
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 6.5e-58 228.4 270 51.5
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 8.5e-58 228.0 257 51.8
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.1e-57 227.6 270 51.5
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 1.6e-56 223.8 270 50.0
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 2.1e-56 223.4 253 49.8
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.1e-56 223.4 270 49.6
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.7e-56 223.0 270 50.7
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 3.6e-56 222.6 270 50.7
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 4.7e-56 222.2 270 50.0
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.4e-55 220.7 270 50.4
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 1.8e-55 220.3 285 48.4
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 3.0e-55 219.5 258 50.0
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 5.2e-55 218.8 227 55.9
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 6.8e-55 218.4 249 50.6
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 8.8e-55 218.0 257 50.2
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 2.6e-54 216.5 215 58.1
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 5.7e-54 215.3 269 49.1
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 5.7e-54 215.3 250 49.2
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 9.8e-54 214.5 272 48.5
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 1.7e-53 213.8 276 48.9
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.8e-52 210.3 209 57.9
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 2.4e-52 209.9 272 47.8
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 3.1e-52 209.5 223 53.8
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.1e-52 209.5 278 48.2
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 1.6e-51 207.2 255 45.1
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 7.7e-51 204.9 270 45.6
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.0e-50 204.5 272 47.1
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 2.2e-50 203.4 263 46.4
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.9e-50 203.0 271 46.9
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.5e-49 200.7 272 46.3
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 2.5e-49 199.9 267 47.9
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.2e-48 197.6 215 54.4
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 8.0e-48 194.9 190 57.4
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 1.8e-47 193.7 127 78.7
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.0e-46 190.3 131 74.0
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 1.7e-45 187.2 177 57.6
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 3.7e-45 186.0 334 39.5
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 1.1e-44 184.5 246 47.2
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 1.6e-43 180.6 177 57.6
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 7.7e-43 178.3 251 44.2
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.3e-42 177.6 209 48.8
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 2.3e-42 176.8 174 58.6
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 6.6e-42 175.3 233 44.6
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 9.5e-41 171.4 190 53.2
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.8e-39 167.2 312 39.1
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 2.3e-39 166.8 248 40.7
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 8.9e-39 164.9 183 54.1
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 9.8e-38 161.4 264 37.5
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 2.2e-37 160.2 247 38.5
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 3.2e-36 156.4 166 54.2
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 9.2e-36 154.8 265 39.6
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 4.6e-35 152.5 271 36.5
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 5.6e-33 145.6 270 34.8
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 4.7e-32 142.5 257 33.5
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 1.4e-31 141.0 201 46.8
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.0e-30 137.1 166 50.0
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.0e-30 137.1 263 36.9
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 8.3e-29 131.7 111 64.9
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.1e-28 131.3 177 41.8
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.2e-24 117.9 196 41.3
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 3.6e-24 116.3 81 75.3
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 8.3e-21 105.1 79 67.1
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 7.1e-20 102.1 177 38.4
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 7.1e-20 102.1 110 57.3
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.1e-19 100.5 104 52.9
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.3e-18 97.1 166 36.1
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 1.4e-15 87.8 267 28.5
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 1.8e-15 87.4 232 28.9
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.1e-15 86.7 220 34.1
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 8.4e-13 78.6 110 46.4
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 2.4e-12 77.0 48 77.1
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 5.4e-12 75.9 263 28.1
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 2.1e-11 73.9 82 52.4
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 2.7e-11 73.6 246 27.6
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.7e-11 73.6 63 63.5
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 2.7e-11 73.6 82 52.4
Lalb_Chr20g0115611 Lupinus albus HOM05D004725 ORTHO05D005683 2.1e-08 63.9 32 96.9
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.8e-08 63.5 66 48.5
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.8e-08 63.5 59 59.3
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 8.1e-08 62.0 40 72.5
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 2.4e-07 60.5 252 25.4
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 1.2e-06 58.2 77 46.8
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.4e-06 56.6 93 35.5


User provided reference genes

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