Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ABX6XB Arachis hypogaea HOM05D005164 ORTHO05D006398 5.8e-159 564.3 312 100.0
arahy.Tifrunner.gnm1.ann1.ZV61IE Arachis hypogaea HOM05D005164 ORTHO05D006398 6.6e-62 241.9 183 82.0
Ca_25003_v3 Cicer arietinum L. HOM05D005164 ORTHO05D006398 4.6e-47 192.6 243 53.1
Glyma.09G231100 Glycine max HOM05D005164 ORTHO05D006398 3.0e-46 189.9 243 52.7
Glyma.12G005400 Glycine max HOM05D005164 ORTHO05D006398 3.9e-46 189.5 243 52.7
TPR.G3648 Trifolium pratense HOM05D005164 ORTHO05D006398 5.1e-46 189.1 243 52.7
VMungo1127G0366 Vigna mungo HOM05D005164 ORTHO05D006398 6.6e-46 188.7 249 51.4
Duzib041G0411 Durio zibethinus HOM05D005164 ORTHO05D006398 1.1e-45 188.0 243 51.4
Potri.014G180800 Populus trichocarpa HOM05D005164 ORTHO05D006398 1.5e-45 187.6 243 51.9
COL.COLO4_26343 Corchorus olitorius HOM05D005164 ORTHO05D006398 2.5e-45 186.8 245 51.4
Ciclev10001386m.g Citrus clementina HOM05D005164 ORTHO05D006398 3.3e-45 186.4 243 51.9
Phvul.011G006200 Phaseolus vulgaris HOM05D005164 ORTHO05D006398 3.3e-45 186.4 243 51.9
Thecc.08G024200 Theobroma cacao HOM05D005164 ORTHO05D006398 4.3e-45 186.0 243 51.4
Sabra14G0141000 Salix brachista HOM05D005164 ORTHO05D006398 7.3e-45 185.3 252 50.0
CANSAT64G0480 Cannabis sativa HOM05D005164 ORTHO05D006398 9.6e-45 184.9 243 51.4
Lj3g0003260 Lotus japonicus HOM05D005164 ORTHO05D006398 1.2e-44 184.5 243 52.3
HanXRQChr02g0040181 Helianthus annuus HOM05D005164 ORTHO05D006398 2.1e-44 183.7 243 50.6
CiPaw.15G075600 Carya illinoinensis HOM05D005164 ORTHO05D006398 3.6e-44 183.0 243 50.2
Potri.002G263200 Populus trichocarpa HOM05D005164 ORTHO05D006398 3.6e-44 183.0 243 51.4
Manes.18G028500 Manihot esculenta HOM05D005164 ORTHO05D006398 4.7e-44 182.6 243 50.6
QL02p007897 Quercus lobata HOM05D005164 ORTHO05D006398 4.7e-44 182.6 243 49.8
MSTRG.24294 Avicennia marina HOM05D005164 ORTHO05D006398 8.1e-44 181.8 245 49.8
Cfa018135 Carpinus fangiana HOM05D005164 ORTHO05D006398 1.1e-43 181.4 243 49.4
ECA247G1488 Erigeron canadensis HOM05D005164 ORTHO05D006398 1.1e-43 181.4 243 50.2
Psat3g167280 Pisum sativum HOM05D005164 ORTHO05D006398 1.1e-43 181.4 243 51.0
Gohir.A03G078200 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.4e-43 181.0 243 50.2
Gohir.D02G094300 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.4e-43 181.0 243 50.2
Gorai.005G107200 Gossypium raimondii HOM05D005164 ORTHO05D006398 1.4e-43 181.0 243 50.2
Lsat_1_v5_gn_1_17561 Lactuca sativa HOM05D005164 ORTHO05D006398 1.4e-43 181.0 243 49.8
Atru.chr13.515 Acer truncatum HOM05D005164 ORTHO05D006398 1.8e-43 180.6 243 49.8
CANSAT25G0119 Cannabis sativa HOM05D005164 ORTHO05D006398 1.8e-43 180.6 243 50.2
Duzib093G0265 Durio zibethinus HOM05D005164 ORTHO05D006398 2.4e-43 180.3 243 49.8
Manes.05G161900 Manihot esculenta HOM05D005164 ORTHO05D006398 2.4e-43 180.3 243 49.0
Medtr0173s0030 Medicago truncatula HOM05D005164 ORTHO05D006398 2.4e-43 180.3 243 51.0
TWI56G0324 Tripterygium wilfordii HOM05D005164 ORTHO05D006398 2.4e-43 180.3 243 49.8
CiPaw.16G055400 Carya illinoinensis HOM05D005164 ORTHO05D006398 3.1e-43 179.9 243 49.4
RcHm_v2.0_Chr6g0300751 Rosa chinensis HOM05D005164 ORTHO05D006398 5.2e-43 179.1 243 49.4
Eucgr.F01909 Eucalyptus grandis HOM05D005164 ORTHO05D006398 6.9e-43 178.7 243 49.4
vmacro21627 Vaccinium macrocarpon HOM05D005164 ORTHO05D006398 8.9e-43 178.3 243 49.4
GSVIVG01009684001 Vitis vinifera HOM05D005164 ORTHO05D006398 8.9e-43 178.3 243 50.2
Dinv36062 Davidia involucrata HOM05D005164 ORTHO05D006398 1.5e-42 177.6 243 50.2
SalBow8G2733 Salvia bowleyana HOM05D005164 ORTHO05D006398 1.5e-42 177.6 243 48.1
Rhsim06G0035000 Rhododendron simsii HOM05D005164 ORTHO05D006398 2.6e-42 176.8 243 49.0
Hund21200 Selenicereus undatus HOM05D005164 ORTHO05D006398 2.6e-42 176.8 240 48.3
ClCG05G019140 Citrullus lanatus HOM05D005164 ORTHO05D006398 4.4e-42 176.0 243 49.8
Gohir.A05G260000 Gossypium hirsutum HOM05D005164 ORTHO05D006398 4.4e-42 176.0 243 49.4
Nn5g29540 Nelumbo nucifera HOM05D005164 ORTHO05D006398 7.6e-42 175.3 243 49.0
TAR376G0296 Trochodendron aralioides HOM05D005164 ORTHO05D006398 9.9e-42 174.9 243 49.4
Gohir.D01G104900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.3e-41 174.5 243 48.1
PGR031G3751 Punica granatum HOM05D005164 ORTHO05D006398 1.3e-41 174.5 243 48.6
Sed0021376 Sechium edule HOM05D005164 ORTHO05D006398 1.3e-41 174.5 243 49.0
Gorai.009G273800 Gossypium raimondii HOM05D005164 ORTHO05D006398 1.7e-41 174.1 243 49.0
Gorai.002G128900 Gossypium raimondii HOM05D005164 ORTHO05D006398 2.2e-41 173.7 243 48.1
Sed0001534 Sechium edule HOM05D005164 ORTHO05D006398 2.2e-41 173.7 243 49.4
Aqoxy6G01049 Aquilegia oxysepala HOM05D005164 ORTHO05D006398 2.9e-41 173.3 243 47.7
Gohir.D05G261900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 2.9e-41 173.3 243 49.0
Lj4C784T1 Lonicera japonica HOM05D005164 ORTHO05D006398 3.8e-41 172.9 243 48.1
Peaxi162Scf00690g00117 Petunia axillaris HOM05D005164 ORTHO05D006398 3.8e-41 172.9 243 49.0
MELO3C003848.2 Cucumis melo HOM05D005164 ORTHO05D006398 4.9e-41 172.6 243 49.0
CsaV3_3G045000 Cucumis sativus L. HOM05D005164 ORTHO05D006398 4.9e-41 172.6 243 49.0
DCAR_019523 Daucus carota HOM05D005164 ORTHO05D006398 4.9e-41 172.6 243 48.1
Solyc04g080160.3 Solanum lycopersicum HOM05D005164 ORTHO05D006398 8.4e-41 171.8 243 48.1
Sopen04g033750 Solanum pennellii HOM05D005164 ORTHO05D006398 8.4e-41 171.8 243 48.1
PGSC0003DMG400005163 Solanum tuberosum HOM05D005164 ORTHO05D006398 8.4e-41 171.8 243 48.1
Gohir.A01G116500 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.1e-40 171.4 243 47.7
Actinidia22558 Actinidia chinensis HOM05D005164 ORTHO05D006398 1.4e-40 171.0 243 49.4
EL10Ac8g20456 Beta vulgaris HOM05D005164 ORTHO05D006398 1.9e-40 170.6 243 47.3
ATR0733G076 Amborella trichopoda HOM05D005164 ORTHO05D006398 2.4e-40 170.2 243 47.7
Cc10_g03080 Coffea canephora HOM05D005164 ORTHO05D006398 3.2e-40 169.9 243 46.9
FvH4_2g40000 Fragaria vesca HOM05D005164 ORTHO05D006398 3.2e-40 169.9 244 48.4
FAN27G0257 Fragaria x ananassa HOM05D005164 ORTHO05D006398 3.2e-40 169.9 244 48.4
AUR62014895 Chenopodium quinoa HOM05D005164 ORTHO05D006398 4.2e-40 169.5 243 47.3
FAN20G1227 Fragaria x ananassa HOM05D005164 ORTHO05D006398 4.2e-40 169.5 244 48.4
MD08G1033300 Malus domestica HOM05D005164 ORTHO05D006398 4.2e-40 169.5 243 48.1
Prupe.1G381600 Prunus persica HOM05D005164 ORTHO05D006398 4.2e-40 169.5 243 48.6
Sc02g0006310 Simmondsia chinensis HOM05D005164 ORTHO05D006398 4.2e-40 169.5 243 47.3
AUR62031100 Chenopodium quinoa HOM05D005164 ORTHO05D006398 5.4e-40 169.1 232 48.7
THA.LOC104814156 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 5.4e-40 169.1 244 47.1
FAN15G2586 Fragaria x ananassa HOM05D005164 ORTHO05D006398 7.1e-40 168.7 244 48.4
AT5G42970 Arabidopsis thaliana HOM05D005164 ORTHO05D006398 9.3e-40 168.3 243 47.7
Carub.0008s0578 Capsella rubella HOM05D005164 ORTHO05D006398 3.5e-39 166.4 243 46.5
CAN.G1126.40 Capsicum annuum HOM05D005164 ORTHO05D006398 4.6e-39 166.0 243 46.1
MD15G1029900 Malus domestica HOM05D005164 ORTHO05D006398 4.6e-39 166.0 251 47.0
THA.LOC104822841 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 4.6e-39 166.0 243 47.3
Aa31LG9G13090 Aethionema arabicum HOM05D005164 ORTHO05D006398 6.0e-39 165.6 243 46.9
Nitab4.5_0010187g0010 Nicotiana tabacum HOM05D005164 ORTHO05D006398 1.0e-38 164.9 232 48.7
Hma1.2p1_0023F.1_g014900 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 3.0e-38 163.3 273 44.0
CARHR181050 Cardamine hirsuta HOM05D005164 ORTHO05D006398 3.9e-38 162.9 243 46.1
Migut.N00498 Erythranthe guttata HOM05D005164 ORTHO05D006398 3.9e-38 162.9 243 45.7
AL8G17800 Arabidopsis lyrata HOM05D005164 ORTHO05D006398 6.6e-38 162.2 243 46.5
Os03g0197400 Oryza sativa ssp. japonica HOM05D005164 ORTHO05D006398 8.7e-38 161.8 245 45.3
A02p27610 Brassica napus HOM05D005164 ORTHO05D006398 3.3e-37 159.8 243 46.1
BolC2t10406H Brassica oleracea HOM05D005164 ORTHO05D006398 3.3e-37 159.8 243 46.1
BraA02t07794Z Brassica rapa HOM05D005164 ORTHO05D006398 3.3e-37 159.8 243 46.1
Thhalv10003436m.g Eutrema salsugineum HOM05D005164 ORTHO05D006398 4.3e-37 159.5 243 45.7
Sp2g07720 Schrenkiella parvula HOM05D005164 ORTHO05D006398 4.3e-37 159.5 243 45.7
BcaB07g30597 Brassica carinata HOM05D005164 ORTHO05D006398 9.6e-37 158.3 243 45.7
Zm00001eb008060 Zea mays HOM05D005164 ORTHO05D006398 1.6e-36 157.5 245 44.1
BcaC03g16546 Brassica carinata HOM05D005164 ORTHO05D006398 2.1e-36 157.1 243 45.7
BcaC06g31734 Brassica carinata HOM05D005164 ORTHO05D006398 2.1e-36 157.1 243 44.9
C02p43640 Brassica napus HOM05D005164 ORTHO05D006398 2.1e-36 157.1 243 45.7
Cpa.g.sc64.68 Carica papaya HOM05D005164 ORTHO05D006398 2.1e-36 157.1 222 48.2
MBI17_g39721_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 4.8e-36 156.0 272 41.9
A06p48120 Brassica napus HOM05D005164 ORTHO05D006398 8.1e-36 155.2 243 44.4
BraA06t27681Z Brassica rapa HOM05D005164 ORTHO05D006398 8.1e-36 155.2 243 44.4
CDE02G4403 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 1.1e-35 154.8 243 46.1
Nitab4.5_0000110g0500 Nicotiana tabacum HOM05D005164 ORTHO05D006398 1.8e-35 154.1 241 45.6
Hma1.2p1_0469F.1_g159190 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 3.1e-35 153.3 284 41.9
unitig_22.g6774 Utricularia gibba HOM05D005164 ORTHO05D006398 4.0e-35 152.9 240 43.8
BcaC02g10785 Brassica carinata HOM05D005164 ORTHO05D006398 6.9e-35 152.1 243 44.0
C04p25110 Brassica napus HOM05D005164 ORTHO05D006398 6.9e-35 152.1 243 44.0
BolC4t24015H Brassica oleracea HOM05D005164 ORTHO05D006398 6.9e-35 152.1 243 44.0
Oeu009868.2 Olea europaea HOM05D005164 ORTHO05D006398 4.2e-32 142.9 312 36.9
arahy.Tifrunner.gnm1.ann1.D3INNH Arachis hypogaea HOM05D005164 ORTHO05D006398 9.3e-32 141.7 108 74.1
arahy.Tifrunner.gnm1.ann1.R33BY8 Arachis hypogaea HOM05D005164 ORTHO05D006398 9.3e-32 141.7 108 74.1
CDE01G0241 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 9.3e-32 141.7 247 43.3
PSO675G3600 Papaver somniferum HOM05D005164 ORTHO05D006398 4.6e-31 139.4 243 42.0
Haze_17990 Corylus avellana HOM05D005164 ORTHO05D006398 6.0e-31 139.0 346 35.0
PSO541G6137 Papaver somniferum HOM05D005164 ORTHO05D006398 7.9e-31 138.7 243 41.6
Mapoly0072s0034 Marchantia polymorpha HOM05D005164 ORTHO05D006398 1.3e-30 137.9 243 38.7
Pp3c5_28450 Physcomitrium patens HOM05D005164 ORTHO05D006398 1.3e-30 137.9 246 39.4
HPP92_024905 Vanilla planifolia HOM05D005164 ORTHO05D006398 2.3e-30 137.1 242 40.9
AagrBONN_evm.TU.Sc2ySwM_117.2514 Anthoceros agrestis HOM05D005164 ORTHO05D006398 3.9e-30 136.3 242 38.8
Actinidia15313 Actinidia chinensis HOM05D005164 ORTHO05D006398 2.1e-28 130.6 221 44.3
SGA_v2.0_scaffold326G48708 Striga asiatica HOM05D005164 ORTHO05D006398 2.4e-27 127.1 194 45.9
SMO364G0673 Selaginella moellendorffii HOM05D005164 ORTHO05D006398 6.9e-27 125.6 243 37.4
CBR_g36268 Chara braunii HOM05D005164 ORTHO05D006398 2.0e-26 124.0 229 38.9
Sopen04g033730 Solanum pennellii HOM05D005164 ORTHO05D006398 2.4e-24 117.1 216 40.7
SEGI_27147 Sequoiadendron giganteum HOM05D005164 ORTHO05D006398 3.2e-24 116.7 204 40.7
CSS0020238 Camellia sinensis var. sinensis HOM05D005164 ORTHO05D006398 3.7e-20 103.2 99 61.6
Carub.0004s0266 Capsella rubella HOM05D005164 ORTHO05D006398 2.6e-18 97.1 96 57.3
GSVIVG01023193001 Vitis vinifera HOM05D005164 ORTHO05D006398 1.0e-17 95.1 90 63.3
RcHm_v2.0_Chr2g0166611 Rosa chinensis HOM05D005164 ORTHO05D006398 6.5e-17 92.4 92 60.9
Cre11.g478240 Chlamydomonas reinhardtii HOM05D005164 ORTHO05D006398 1.4e-16 91.3 233 31.8
GSVIVG01003780001 Vitis vinifera HOM05D005164 ORTHO05D006398 2.5e-16 90.5 90 60.0
arahy.Tifrunner.gnm1.ann1.I6PHI5 Arachis hypogaea HOM05D000003 ORTHO05D000022 1.1e-13 81.6 70 61.4
MCO16G668 Micromonas commoda HOM05D005164 ORTHO05D006398 1.1e-13 81.6 248 30.2
CAN.G416.53 Capsicum annuum HOM05D005164 ORTHO05D006398 9.7e-13 78.6 105 46.7
arahy.Tifrunner.gnm1.ann1.XW6Y6R Arachis hypogaea HOM05D000003 ORTHO05D000022 1.3e-12 78.2 69 58.0
arahy.Tifrunner.gnm1.ann1.9H0YUK Arachis hypogaea HOM05D000003 ORTHO05D000022 3.7e-12 76.6 70 57.1
arahy.Tifrunner.gnm1.ann1.W1QYVV Arachis hypogaea HOM05D000003 ORTHO05D000022 3.4e-10 70.1 68 50.0
arahy.Tifrunner.gnm1.ann1.2K5AT5 Arachis hypogaea HOM05D005164 ORTHO05D006398 3.2e-08 63.5 33 97.0
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 1.0e-06 58.5 72 41.7
QL02p017925 Quercus lobata HOM05D000003 ORTHO05D000022 3.9e-06 56.6 74 40.5


User provided reference genes

Program Settings